def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlAutoproc.preProcess")
self.xds_anom = self.loadPlugin('EDPluginExecMinimalXds')
self.xds_noanom = self.loadPlugin('EDPluginExecMinimalXds')
path = os.path.abspath(self.dataInput.previous_run_dir.value)
# create the data inputs now we know the files are here
input_anom = XSDataMinimalXdsIn()
input_anom.input_file = XSDataString(os.path.join(path, 'XDS.INP'))
input_anom.friedels_law = XSDataBoolean(True)
input_anom.job = XSDataString('CORRECT')
input_anom.resolution = self.dataInput.resolution
input_anom.resolution_range = [
XSDataFloat(60), self.dataInput.resolution
]
self.xds_anom.dataInput = input_anom
input_noanom = XSDataMinimalXdsIn()
input_noanom.input_file = XSDataString(os.path.join(path, 'XDS.INP'))
input_noanom.fridels_law = XSDataBoolean(False)
input_noanom.job = XSDataString('CORRECT')
input_noanom.resolution_range = [
XSDataFloat(60), self.dataInput.resolution
]
self.xds_noanom.dataInput = input_noanom
xds_anom_dir = os.path.abspath(self.xds_anom.getWorkingDirectory())
xds_noanom_dir = os.path.abspath(self.xds_noanom.getWorkingDirectory())
# let's make some links!
for f in self._to_link:
os.symlink(f, os.path.join(xds_anom_dir, os.path.basename(f)))
os.symlink(f, os.path.join(xds_noanom_dir, os.path.basename(f)))
# now this is the horrible part, we need to make symlinks to
# the images also. for now we rely on the fact that the links
# in the previous run are most likely the links to the
# images. So we will make the same links and rely on the fact
# that in the input file the path to the images is already
# relative to the CWD
path = os.path.abspath(self.dataInput.previous_run_dir.value)
for f in os.listdir(path):
fullpath = os.path.join(path, f)
if os.path.islink(fullpath):
# symlink the symlink...
os.symlink(fullpath, os.path.join(xds_anom_dir, f))
os.symlink(fullpath, os.path.join(xds_noanom_dir, f))
def preProcess(self, _edObject = None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlAutoproc.preProcess")
self.xds_anom = self.loadPlugin('EDPluginExecMinimalXds')
self.xds_noanom = self.loadPlugin('EDPluginExecMinimalXds')
path = os.path.abspath(self.dataInput.previous_run_dir.value)
# The MinimalXds plugin takes care of creating determining the
# real images directory and creating a symlink to it so we
# only need to update the NAMED_TEMPLATE_OF_DATA_FILES keyword
# to not be relative anymore. We'll copy it to our own dir
# beforehand to avoid clobbering it
xdsinp = os.path.join(path, 'XDS.INP')
new_xdsinp = os.path.join(self.getWorkingDirectory(), 'XDS.INP')
copyfile(xdsinp, new_xdsinp)
parsed_config = parse_xds_file(new_xdsinp)
file_template = parsed_config['NAME_TEMPLATE_OF_DATA_FRAMES='][0]
parsed_config['NAME_TEMPLATE_OF_DATA_FRAMES='] = os.path.abspath(os.path.join(path, file_template))
dump_xds_file(new_xdsinp, parsed_config)
# create the data inputs now we know the files are here
input_anom = XSDataMinimalXdsIn()
input_anom.input_file = XSDataString(new_xdsinp)
input_anom.friedels_law = XSDataBoolean(False)
input_anom.job = XSDataString('CORRECT')
input_anom.resolution = self.dataInput.resolution
input_anom.resolution_range = [XSDataFloat(60), self.dataInput.resolution]
self.xds_anom.dataInput = input_anom
input_noanom = XSDataMinimalXdsIn()
input_noanom.input_file = XSDataString(new_xdsinp)
input_noanom.friedels_law = XSDataBoolean(True)
input_noanom.job = XSDataString('CORRECT')
input_noanom.resolution_range = [XSDataFloat(60), self.dataInput.resolution]
self.xds_noanom.dataInput = input_noanom
xds_anom_dir = os.path.abspath(self.xds_anom.getWorkingDirectory())
xds_noanom_dir = os.path.abspath(self.xds_noanom.getWorkingDirectory())
# let's make some links!
for f in self._to_link:
os.symlink(f, os.path.join(xds_anom_dir, os.path.basename(f)))
os.symlink(f, os.path.join(xds_noanom_dir, os.path.basename(f)))
def preProcess(self, _edObject = None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlAutoproc.preProcess")
self.xds_anom = self.loadPlugin('EDPluginExecMinimalXds')
self.xds_noanom = self.loadPlugin('EDPluginExecMinimalXds')
path = os.path.abspath(self.dataInput.previous_run_dir.value)
# The MinimalXds plugin takes care of creating determining the
# real images directory and creating a symlink to it so we
# only need to update the NAMED_TEMPLATE_OF_DATA_FILES keyword
# to not be relative anymore. We'll copy it to our own dir
# beforehand to avoid clobbering it
xdsinp = os.path.join(path, 'XDS.INP')
new_xdsinp = os.path.join(self.getWorkingDirectory(), 'XDS.INP')
copyfile(xdsinp, new_xdsinp)
parsed_config = parse_xds_file(new_xdsinp)
file_template = parsed_config['NAME_TEMPLATE_OF_DATA_FRAMES='][0]
parsed_config['NAME_TEMPLATE_OF_DATA_FRAMES='] = os.path.abspath(os.path.join(path, file_template))
dump_xds_file(new_xdsinp, parsed_config)
# create the data inputs now we know the files are here
input_anom = XSDataMinimalXdsIn()
input_anom.input_file = XSDataString(new_xdsinp)
input_anom.friedels_law = XSDataBoolean(True)
input_anom.job = XSDataString('CORRECT')
input_anom.resolution = self.dataInput.resolution
input_anom.resolution_range = [XSDataFloat(60), self.dataInput.resolution]
self.xds_anom.dataInput = input_anom
input_noanom = XSDataMinimalXdsIn()
input_noanom.input_file = XSDataString(new_xdsinp)
input_noanom.friedels_law = XSDataBoolean(False)
input_noanom.job = XSDataString('CORRECT')
input_noanom.resolution_range = [XSDataFloat(60), self.dataInput.resolution]
self.xds_noanom.dataInput = input_noanom
xds_anom_dir = os.path.abspath(self.xds_anom.getWorkingDirectory())
xds_noanom_dir = os.path.abspath(self.xds_noanom.getWorkingDirectory())
# let's make some links!
for f in self._to_link:
os.symlink(f, os.path.join(xds_anom_dir, os.path.basename(f)))
os.symlink(f, os.path.join(xds_noanom_dir, os.path.basename(f)))
def preProcess(self, _edObject = None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlAutoproc.preProcess")
self.xds_anom = self.loadPlugin('EDPluginExecMinimalXds')
self.xds_noanom = self.loadPlugin('EDPluginExecMinimalXds')
path = os.path.abspath(self.dataInput.previous_run_dir.value)
# create the data inputs now we know the files are here
input_anom = XSDataMinimalXdsIn()
input_anom.input_file = XSDataString(os.path.join(path, 'XDS.INP'))
input_anom.friedels_law = XSDataBoolean(True)
input_anom.job = XSDataString('CORRECT')
input_anom.resolution = self.dataInput.resolution
input_anom.resolution_range = [XSDataFloat(60), self.dataInput.resolution]
self.xds_anom.dataInput = input_anom
input_noanom = XSDataMinimalXdsIn()
input_noanom.input_file = XSDataString(os.path.join(path, 'XDS.INP'))
input_noanom.fridels_law = XSDataBoolean(False)
input_noanom.job = XSDataString('CORRECT')
input_noanom.resolution_range = [XSDataFloat(60), self.dataInput.resolution]
self.xds_noanom.dataInput = input_noanom
xds_anom_dir = os.path.abspath(self.xds_anom.getWorkingDirectory())
xds_noanom_dir = os.path.abspath(self.xds_noanom.getWorkingDirectory())
# let's make some links!
for f in self._to_link:
os.symlink(f, os.path.join(xds_anom_dir, os.path.basename(f)))
os.symlink(f, os.path.join(xds_noanom_dir, os.path.basename(f)))
# now this is the horrible part, we need to make symlinks to
# the images also. for now we rely on the fact that the links
# in the previous run are most likely the links to the
# images. So we will make the same links and rely on the fact
# that in the input file the path to the images is already
# relative to the CWD
path = os.path.abspath(self.dataInput.previous_run_dir.value)
for f in os.listdir(path):
fullpath = os.path.join(path, f)
if os.path.islink(fullpath):
# symlink the symlink...
os.symlink(fullpath, os.path.join(xds_anom_dir, f))
os.symlink(fullpath, os.path.join(xds_noanom_dir, f))
