def makeXML(self, filename):
"""Here we create the XML string to be passed to the EDNA plugin from the input filename
This can / should be modified by the final user
@param filename: full path of the input file
@type filename: python string representing the path
@rtype: XML string
@return: python string
"""
bProcessFile = False
basename = os.path.basename(filename)
for oneExt in self.listExtensions:
if basename.endswith(oneExt):
bProcessFile = True
break
if bProcessFile:
for onePref in self.listExcludedPrefix:
if basename.startswith(onePref):
bProcessFile = False
if not bProcessFile:
EDVerbose.screen("Not processing file: %s" % filename)
return
xsdimage = XSDataImage()
xsdimage.setPath(XSDataString(filename))
xsd = XSDataInputDiffractionCT()
xsd.setImage(xsdimage)
xsd.setDestinationDirectory(self.destinationDirectory)
xsd.setSinogramFileNamePrefix(self.sinogramFileNamePrefix)
xsd.setPowderDiffractionSubdirectory(
self.powderDiffractionSubdirectory)
xsd.setPowderDiffractionFormat(self.powderDiffractionFormat)
if self.indexOffset is not None and self.fastMotorSteps is not None:
idx = 0
basename = list(os.path.splitext(os.path.basename(filename))[0])
basename.reverse()
number = ""
for i in basename:
if i.isdigit():
number = i + number
else:
break
idx = int(number) - self.indexOffset
if idx < 0: return
self.forceInstrument.set_tomo_spec_displ_x(
XSDataLength(idx % (self.fastMotorSteps + 1)))
self.forceInstrument.set_tomo_spec_displ_rotation(
XSDataLength(idx // (self.fastMotorSteps + 1)))
xsd.setOverrideScanParam(self.forceInstrument)
xsd.setOverrideImageParam(self.forceImage)
return xsd.marshal()
def makeXML(self, filename):
"""Here we create the XML string to be passed to the EDNA plugin from the input filename
This can / should be modified by the final user
@param filename: full path of the input file
@type filename: python string representing the path
@rtype: XML string
@return: python string
"""
bProcessFile = False
basename = os.path.basename(filename)
for oneExt in self.listExtensions:
if basename.endswith(oneExt):
bProcessFile = True
break
if bProcessFile:
for onePref in self.listExcludedPrefix:
if basename.startswith(onePref):
bProcessFile = False
if not bProcessFile:
EDVerbose.screen("Not processing file: %s" % filename)
return
xsdimage = XSDataImage()
xsdimage.setPath(XSDataString(filename))
xsd = XSDataInputDiffractionCT()
xsd.setImage(xsdimage)
xsd.setDestinationDirectory(self.destinationDirectory)
xsd.setSinogramFileNamePrefix(self.sinogramFileNamePrefix)
xsd.setPowderDiffractionSubdirectory(self.powderDiffractionSubdirectory)
xsd.setPowderDiffractionFormat(self.powderDiffractionFormat)
if self.indexOffset is not None and self.fastMotorSteps is not None:
idx = 0
basename = list(os.path.splitext(os.path.basename(filename))[0])
basename.reverse()
number = ""
for i in basename:
if i.isdigit():
number = i + number
else: break
idx = int(number) - self.indexOffset
if idx < 0:return
self.forceInstrument.set_tomo_spec_displ_x(XSDataLength(idx % (self.fastMotorSteps + 1)))
self.forceInstrument.set_tomo_spec_displ_rotation(XSDataLength(idx // (self.fastMotorSteps + 1)))
xsd.setOverrideScanParam(self.forceInstrument)
xsd.setOverrideImageParam(self.forceImage)
return xsd.marshal()
