def exportChildren(self,
outfile,
level,
name_='XSDataResultInterfacev2_2'):
XSDataResultInterface.exportChildren(self, outfile, level, name_)
if self.__mxv1ResultCharacterisation is not None:
self.mxv1ResultCharacterisation.export(
outfile, level, name_='mxv1ResultCharacterisation')
else:
warnEmptyAttribute("mxv1ResultCharacterisation",
"XSDataResultCharacterisation")
if self.__mxv1ResultCharacterisation_Reference is not None:
self.mxv1ResultCharacterisation_Reference.export(
outfile, level, name_='mxv1ResultCharacterisation_Reference')
if self.__mxv2DataCollection is not None:
self.mxv2DataCollection.export(outfile,
level,
name_='mxv2DataCollection')
if self.__mxv2DataCollection_Reference is not None:
self.mxv2DataCollection_Reference.export(
outfile, level, name_='mxv2DataCollection_Reference')
if self.__suggestedStrategy is not None:
self.suggestedStrategy.export(outfile,
level,
name_='suggestedStrategy')
if self.__possibleOrientations is not None:
self.possibleOrientations.export(outfile,
level,
name_='possibleOrientations')
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'mxv1ResultCharacterisation':
obj_ = XSDataResultCharacterisation()
obj_.build(child_)
self.setMxv1ResultCharacterisation(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'mxv1ResultCharacterisation_Reference':
obj_ = XSDataResultCharacterisation()
obj_.build(child_)
self.setMxv1ResultCharacterisation_Reference(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'mxv2DataCollection':
obj_ = XSDataCollection()
obj_.build(child_)
self.setMxv2DataCollection(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'mxv2DataCollection_Reference':
obj_ = XSDataCollection()
obj_.build(child_)
self.setMxv2DataCollection_Reference(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'suggestedStrategy':
obj_ = XSDataResultStrategy()
obj_.build(child_)
self.setSuggestedStrategy(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'possibleOrientations':
obj_ = kappa_alignment_response()
obj_.build(child_)
self.setPossibleOrientations(obj_)
XSDataResultInterface.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_): if child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'mxv1ResultCharacterisation': obj_ = XSDataResultCharacterisation() obj_.build(child_) self.setMxv1ResultCharacterisation(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'mxv1ResultCharacterisation_Reference': obj_ = XSDataResultCharacterisation() obj_.build(child_) self.setMxv1ResultCharacterisation_Reference(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'mxv2DataCollection': obj_ = XSDataCollection() obj_.build(child_) self.setMxv2DataCollection(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'mxv2DataCollection_Reference': obj_ = XSDataCollection() obj_.build(child_) self.setMxv2DataCollection_Reference(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'suggestedStrategy': obj_ = XSDataResultStrategy() obj_.build(child_) self.setSuggestedStrategy(obj_) elif child_.nodeType == Node.ELEMENT_NODE and \ nodeName_ == 'possibleOrientations': obj_ = kappa_alignment_response() obj_.build(child_) self.setPossibleOrientations(obj_) XSDataResultInterface.buildChildren(self, child_, nodeName_)
def __init__(self, resultControlISPyB=None, resultCharacterisation=None, possibleOrientations=None, suggestedStrategy=None, mxv2DataCollection_Reference=None, mxv2DataCollection=None, mxv1ResultCharacterisation_Reference=None, mxv1ResultCharacterisation=None):
XSDataResultInterface.__init__(self, resultControlISPyB, resultCharacterisation)
checkType("XSDataResultInterfacev2_2", "Constructor of XSDataResultInterfacev2_2", mxv1ResultCharacterisation, "XSDataResultCharacterisation")
self.__mxv1ResultCharacterisation = mxv1ResultCharacterisation
checkType("XSDataResultInterfacev2_2", "Constructor of XSDataResultInterfacev2_2", mxv1ResultCharacterisation_Reference, "XSDataResultCharacterisation")
self.__mxv1ResultCharacterisation_Reference = mxv1ResultCharacterisation_Reference
checkType("XSDataResultInterfacev2_2", "Constructor of XSDataResultInterfacev2_2", mxv2DataCollection, "XSDataCollection")
self.__mxv2DataCollection = mxv2DataCollection
checkType("XSDataResultInterfacev2_2", "Constructor of XSDataResultInterfacev2_2", mxv2DataCollection_Reference, "XSDataCollection")
self.__mxv2DataCollection_Reference = mxv2DataCollection_Reference
checkType("XSDataResultInterfacev2_2", "Constructor of XSDataResultInterfacev2_2", suggestedStrategy, "XSDataResultStrategy")
self.__suggestedStrategy = suggestedStrategy
checkType("XSDataResultInterfacev2_2", "Constructor of XSDataResultInterfacev2_2", possibleOrientations, "kappa_alignment_response")
self.__possibleOrientations = possibleOrientations
def exportChildren(self, outfile, level, name_='XSDataResultInterfacev2_2'):
XSDataResultInterface.exportChildren(self, outfile, level, name_)
if self.__mxv1ResultCharacterisation is not None:
self.mxv1ResultCharacterisation.export(outfile, level, name_='mxv1ResultCharacterisation')
else:
warnEmptyAttribute("mxv1ResultCharacterisation", "XSDataResultCharacterisation")
if self.__mxv1ResultCharacterisation_Reference is not None:
self.mxv1ResultCharacterisation_Reference.export(outfile, level, name_='mxv1ResultCharacterisation_Reference')
if self.__mxv2DataCollection is not None:
self.mxv2DataCollection.export(outfile, level, name_='mxv2DataCollection')
if self.__mxv2DataCollection_Reference is not None:
self.mxv2DataCollection_Reference.export(outfile, level, name_='mxv2DataCollection_Reference')
if self.__suggestedStrategy is not None:
self.suggestedStrategy.export(outfile, level, name_='suggestedStrategy')
if self.__possibleOrientations is not None:
self.possibleOrientations.export(outfile, level, name_='possibleOrientations')
def functionXMLout(_strXMLin, _strXMLout):
"""
This is an example of XMLout function ... it prints only the name of the file created
@param _srXMLin: The XML string used to launch the job
@type _strXMLin: python string with the input XML
@param _strXMLout: The XML string retrieved job
@type _strXMLout: python string with the output XML
@return: None
"""
xsDataInputInterface = XSDataInputInterface.parseString(_strXMLin)
strImagePath = xsDataInputInterface.getImagePath()[0].getPath().getValue()
EDVerbose.screen("Successful processing of image %s" % strImagePath)
strResultText = os.path.dirname(strImagePath) + " " + os.path.basename(strImagePath) + " "
xsDataResultInterface = XSDataResultInterface.parseString(_strXMLout)
xsDataResultCharacterisation = xsDataResultInterface.getResultCharacterisation()
#
xsDataIndexingResult = xsDataResultCharacterisation.getIndexingResult()
#strResultText = _strDirectoryVisit + " " + strFileName + " "
if (xsDataIndexingResult is None):
strResultText += "Indexing failed"
else:
xsDataSelectedSolution = xsDataIndexingResult.getSelectedSolution()
fMosaicityEstimation = xsDataSelectedSolution.getCrystal().getMosaicity().getValue()
strResultText += "Mosaicity: %.2f " % fMosaicityEstimation
xsDataStrategyResult = xsDataResultCharacterisation.getStrategyResult()
if (xsDataStrategyResult is None):
strResultText += "No strategy result"
else:
xsDataCollectionPlan = xsDataStrategyResult.getCollectionPlan()[0]
xsDataStrategySummary = xsDataCollectionPlan.getStrategySummary()
fRankingResolution = xsDataStrategySummary.getRankingResolution().getValue()
strResultText += "Resolution: %.2f" % fRankingResolution
writeToResultFile(strResultText)
def finallyProcess(self, _edPlugin=None):
EDPluginControl.finallyProcess(self, _edPlugin)
EDVerbose.DEBUG("EDPluginControlInterfacev1_2.finallyProcess...")
if (not self.edPluginControlCharacterisation is None):
if (self.edPluginControlCharacterisation.hasDataOutput()):
self.setDataOutput(self.edPluginControlCharacterisation.getDataOutput(), "characterisation")
if (not self.edPluginControlISPyB is None):
if (self.edPluginControlISPyB.hasDataOutput()):
self.setDataOutput(self.edPluginControlISPyB.getDataOutput(), "ISPyB")
if self.hasDataInput():
xsDataResultInterface = XSDataResultInterface()
if self.edPluginControlCharacterisation:
xsDataResultInterface.setResultCharacterisation(self.edPluginControlCharacterisation.getDataOutput())
if self.edPluginControlISPyB:
xsDataResultInterface.setResultControlISPyB(self.edPluginControlISPyB.getDataOutput())
self.setDataOutput(xsDataResultInterface)
def __init__(self,
resultControlISPyB=None,
resultCharacterisation=None,
possibleOrientations=None,
suggestedStrategy=None,
mxv2DataCollection_Reference=None,
mxv2DataCollection=None,
mxv1ResultCharacterisation_Reference=None,
mxv1ResultCharacterisation=None):
XSDataResultInterface.__init__(self, resultControlISPyB,
resultCharacterisation)
checkType("XSDataResultInterfacev2_2",
"Constructor of XSDataResultInterfacev2_2",
mxv1ResultCharacterisation, "XSDataResultCharacterisation")
self.__mxv1ResultCharacterisation = mxv1ResultCharacterisation
checkType("XSDataResultInterfacev2_2",
"Constructor of XSDataResultInterfacev2_2",
mxv1ResultCharacterisation_Reference,
"XSDataResultCharacterisation")
self.__mxv1ResultCharacterisation_Reference = mxv1ResultCharacterisation_Reference
checkType("XSDataResultInterfacev2_2",
"Constructor of XSDataResultInterfacev2_2",
mxv2DataCollection, "XSDataCollection")
self.__mxv2DataCollection = mxv2DataCollection
checkType("XSDataResultInterfacev2_2",
"Constructor of XSDataResultInterfacev2_2",
mxv2DataCollection_Reference, "XSDataCollection")
self.__mxv2DataCollection_Reference = mxv2DataCollection_Reference
checkType("XSDataResultInterfacev2_2",
"Constructor of XSDataResultInterfacev2_2",
suggestedStrategy, "XSDataResultStrategy")
self.__suggestedStrategy = suggestedStrategy
checkType("XSDataResultInterfacev2_2",
"Constructor of XSDataResultInterfacev2_2",
possibleOrientations, "kappa_alignment_response")
self.__possibleOrientations = possibleOrientations
def finallyProcess(self, _edPlugin=None):
EDPluginControl.finallyProcess(self, _edPlugin)
self.DEBUG("EDPluginControlInterfacev1_2.finallyProcess...")
if (not self.edPluginControlCharacterisation is None):
if (self.edPluginControlCharacterisation.hasDataOutput()):
self.setDataOutput(self.edPluginControlCharacterisation.getDataOutput(), "characterisation")
if (not self.edPluginControlISPyB is None):
if (self.edPluginControlISPyB.hasDataOutput()):
self.setDataOutput(self.edPluginControlISPyB.getDataOutput(), "ISPyB")
if self.hasDataInput():
xsDataResultInterface = XSDataResultInterface()
if self.edPluginControlCharacterisation:
xsDataResultInterface.setResultCharacterisation(self.edPluginControlCharacterisation.getDataOutput())
if self.edPluginControlISPyB:
xsDataResultInterface.setResultControlISPyB(self.edPluginControlISPyB.getDataOutput())
self.setDataOutput(xsDataResultInterface)
def __init__(self,
resultControlISPyB=None,
resultCharacterisation=None,
possibleOrientations=None,
suggestedStrategy=None,
mxv2DataCollection_Reference=None,
mxv2DataCollection=None,
mxv2ResultCharacterisation=None,
mxv1ResultCharacterisation_Reference=None,
mxv1ResultCharacterisation=None):
XSDataResultInterface.__init__(self, resultControlISPyB,
resultCharacterisation)
if mxv1ResultCharacterisation is None:
self._mxv1ResultCharacterisation = None
elif mxv1ResultCharacterisation.__class__.__name__ == "XSDataResultCharacterisation":
self._mxv1ResultCharacterisation = mxv1ResultCharacterisation
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv1ResultCharacterisation' is not XSDataResultCharacterisation but %s" % self._mxv1ResultCharacterisation.__class__.__name__
raise BaseException(strMessage)
if mxv1ResultCharacterisation_Reference is None:
self._mxv1ResultCharacterisation_Reference = None
elif mxv1ResultCharacterisation_Reference.__class__.__name__ == "XSDataResultCharacterisation":
self._mxv1ResultCharacterisation_Reference = mxv1ResultCharacterisation_Reference
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv1ResultCharacterisation_Reference' is not XSDataResultCharacterisation but %s" % self._mxv1ResultCharacterisation_Reference.__class__.__name__
raise BaseException(strMessage)
if mxv2ResultCharacterisation is None:
self._mxv2ResultCharacterisation = None
elif mxv2ResultCharacterisation.__class__.__name__ == "XSDataResultCharacterisationv2_0":
self._mxv2ResultCharacterisation = mxv2ResultCharacterisation
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv2ResultCharacterisation' is not XSDataResultCharacterisationv2_0 but %s" % self._mxv2ResultCharacterisation.__class__.__name__
raise BaseException(strMessage)
if mxv2DataCollection is None:
self._mxv2DataCollection = None
elif mxv2DataCollection.__class__.__name__ == "XSDataCollection":
self._mxv2DataCollection = mxv2DataCollection
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv2DataCollection' is not XSDataCollection but %s" % self._mxv2DataCollection.__class__.__name__
raise BaseException(strMessage)
if mxv2DataCollection_Reference is None:
self._mxv2DataCollection_Reference = None
elif mxv2DataCollection_Reference.__class__.__name__ == "XSDataCollection":
self._mxv2DataCollection_Reference = mxv2DataCollection_Reference
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv2DataCollection_Reference' is not XSDataCollection but %s" % self._mxv2DataCollection_Reference.__class__.__name__
raise BaseException(strMessage)
if suggestedStrategy is None:
self._suggestedStrategy = None
elif suggestedStrategy.__class__.__name__ == "XSDataResultStrategy":
self._suggestedStrategy = suggestedStrategy
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'suggestedStrategy' is not XSDataResultStrategy but %s" % self._suggestedStrategy.__class__.__name__
raise BaseException(strMessage)
if possibleOrientations is None:
self._possibleOrientations = None
elif possibleOrientations.__class__.__name__ == "kappa_alignment_response":
self._possibleOrientations = possibleOrientations
else:
strMessage = "ERROR! XSDataResultInterfacev2_2 constructor argument 'possibleOrientations' is not kappa_alignment_response but %s" % self._possibleOrientations.__class__.__name__
raise BaseException(strMessage)
def __init__(
self,
resultControlISPyB=None,
resultCharacterisation=None,
possibleOrientations=None,
suggestedStrategy=None,
mxv2DataCollection_Reference=None,
mxv2DataCollection=None,
mxv2ResultCharacterisation=None,
mxv1ResultCharacterisation_Reference=None,
mxv1ResultCharacterisation=None,
):
XSDataResultInterface.__init__(self, resultControlISPyB, resultCharacterisation)
if mxv1ResultCharacterisation is None:
self._mxv1ResultCharacterisation = None
elif mxv1ResultCharacterisation.__class__.__name__ == "XSDataResultCharacterisation":
self._mxv1ResultCharacterisation = mxv1ResultCharacterisation
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv1ResultCharacterisation' is not XSDataResultCharacterisation but %s"
% self._mxv1ResultCharacterisation.__class__.__name__
)
raise BaseException(strMessage)
if mxv1ResultCharacterisation_Reference is None:
self._mxv1ResultCharacterisation_Reference = None
elif mxv1ResultCharacterisation_Reference.__class__.__name__ == "XSDataResultCharacterisation":
self._mxv1ResultCharacterisation_Reference = mxv1ResultCharacterisation_Reference
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv1ResultCharacterisation_Reference' is not XSDataResultCharacterisation but %s"
% self._mxv1ResultCharacterisation_Reference.__class__.__name__
)
raise BaseException(strMessage)
if mxv2ResultCharacterisation is None:
self._mxv2ResultCharacterisation = None
elif mxv2ResultCharacterisation.__class__.__name__ == "XSDataResultCharacterisationv2_0":
self._mxv2ResultCharacterisation = mxv2ResultCharacterisation
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv2ResultCharacterisation' is not XSDataResultCharacterisationv2_0 but %s"
% self._mxv2ResultCharacterisation.__class__.__name__
)
raise BaseException(strMessage)
if mxv2DataCollection is None:
self._mxv2DataCollection = None
elif mxv2DataCollection.__class__.__name__ == "XSDataCollection":
self._mxv2DataCollection = mxv2DataCollection
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv2DataCollection' is not XSDataCollection but %s"
% self._mxv2DataCollection.__class__.__name__
)
raise BaseException(strMessage)
if mxv2DataCollection_Reference is None:
self._mxv2DataCollection_Reference = None
elif mxv2DataCollection_Reference.__class__.__name__ == "XSDataCollection":
self._mxv2DataCollection_Reference = mxv2DataCollection_Reference
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'mxv2DataCollection_Reference' is not XSDataCollection but %s"
% self._mxv2DataCollection_Reference.__class__.__name__
)
raise BaseException(strMessage)
if suggestedStrategy is None:
self._suggestedStrategy = None
elif suggestedStrategy.__class__.__name__ == "XSDataResultStrategy":
self._suggestedStrategy = suggestedStrategy
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'suggestedStrategy' is not XSDataResultStrategy but %s"
% self._suggestedStrategy.__class__.__name__
)
raise BaseException(strMessage)
if possibleOrientations is None:
self._possibleOrientations = None
elif possibleOrientations.__class__.__name__ == "kappa_alignment_response":
self._possibleOrientations = possibleOrientations
else:
strMessage = (
"ERROR! XSDataResultInterfacev2_2 constructor argument 'possibleOrientations' is not kappa_alignment_response but %s"
% self._possibleOrientations.__class__.__name__
)
raise BaseException(strMessage)
