def getReferenceDataMOSFLMNewmat(self):
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(-0.00826416)
XSDataMatrixDoubleA.setM12(0.00885073)
XSDataMatrixDoubleA.setM13(0.00937013)
XSDataMatrixDoubleA.setM21(0.00126554)
XSDataMatrixDoubleA.setM22(0.01251971)
XSDataMatrixDoubleA.setM23(-0.00845341)
XSDataMatrixDoubleA.setM31(-0.01484956)
XSDataMatrixDoubleA.setM32(-0.00385867)
XSDataMatrixDoubleA.setM33(-0.00593515)
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(1.000))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(2.000))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(3.000))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(-0.4849475)
XSDataMatrixDoubleU.setM12(0.5598049)
XSDataMatrixDoubleU.setM13(0.6718960)
XSDataMatrixDoubleU.setM21(0.0742629)
XSDataMatrixDoubleU.setM22(0.7918670)
XSDataMatrixDoubleU.setM23(-0.6061614)
XSDataMatrixDoubleU.setM31(-0.8713845)
XSDataMatrixDoubleU.setM32(-0.2440595)
XSDataMatrixDoubleU.setM33(-0.4255866)
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(54.8079))
xsDataCellRefined.setLength_b(XSDataLength(59.0751))
xsDataCellRefined.setLength_c(XSDataLength(66.9736))
xsDataCellRefined.setAngle_alpha(XSDataAngle(91.0000))
xsDataCellRefined.setAngle_beta(XSDataAngle(92.0000))
xsDataCellRefined.setAngle_gamma(XSDataAngle(93.0000))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def getReferenceDataMOSFLMNewmat(self):
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(-0.00826416)
XSDataMatrixDoubleA.setM12(0.00885073)
XSDataMatrixDoubleA.setM13(0.00937013)
XSDataMatrixDoubleA.setM21(0.00126554)
XSDataMatrixDoubleA.setM22(0.01251971)
XSDataMatrixDoubleA.setM23(-0.00845341)
XSDataMatrixDoubleA.setM31(-0.01484956)
XSDataMatrixDoubleA.setM32(-0.00385867)
XSDataMatrixDoubleA.setM33(-0.00593515)
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(1.000))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(2.000))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(3.000))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(-0.4849475)
XSDataMatrixDoubleU.setM12(0.5598049)
XSDataMatrixDoubleU.setM13(0.6718960)
XSDataMatrixDoubleU.setM21(0.0742629)
XSDataMatrixDoubleU.setM22(0.7918670)
XSDataMatrixDoubleU.setM23(-0.6061614)
XSDataMatrixDoubleU.setM31(-0.8713845)
XSDataMatrixDoubleU.setM32(-0.2440595)
XSDataMatrixDoubleU.setM33(-0.4255866)
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(54.8079))
xsDataCellRefined.setLength_b(XSDataLength(59.0751))
xsDataCellRefined.setLength_c(XSDataLength(66.9736))
xsDataCellRefined.setAngle_alpha(XSDataAngle(91.0000))
xsDataCellRefined.setAngle_beta(XSDataAngle(92.0000))
xsDataCellRefined.setAngle_gamma(XSDataAngle(93.0000))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def getDataMOSFLMNewmat(self, _strNewmatFileName=None):
self.DEBUG("EDPluginMOSFLMv10.getDataMOSFLMNewmat")
xsDataMOSFLMNewmat = None
strNewmatFileName = None
listOfListOfFloat = []
if (_strNewmatFileName == None):
strNewmatFileName = self.getNewmatFileName()
else:
strNewmatFileName = _strNewmatFileName
strNewmat = None
try:
strNewmat = self.readProcessFile(strNewmatFileName)
except:
strError = self.readProcessErrorLogFile()
if (strError is not None) and (strError != ""):
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat: %s : error reading newmat file : %s" % \
(self.getClassName(), strError)
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat : Cannot read MOSFLM NEWMAT file : " + strNewmatFileName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
#print strNewmat
if (strNewmat is not None):
listLine = strNewmat.split("\n")
# Convert into list of lists of float
for strLine in listLine:
if not strLine.startswith("SYMM"):
listOfListOfFloat.append(self.splitStringIntoListOfFloats(strLine))
# Fill in the data
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(listOfListOfFloat[0][0])
XSDataMatrixDoubleA.setM12(listOfListOfFloat[0][1])
XSDataMatrixDoubleA.setM13(listOfListOfFloat[0][2])
XSDataMatrixDoubleA.setM21(listOfListOfFloat[1][0])
XSDataMatrixDoubleA.setM22(listOfListOfFloat[1][1])
XSDataMatrixDoubleA.setM23(listOfListOfFloat[1][2])
XSDataMatrixDoubleA.setM31(listOfListOfFloat[2][0])
XSDataMatrixDoubleA.setM32(listOfListOfFloat[2][1])
XSDataMatrixDoubleA.setM33(listOfListOfFloat[2][2])
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(listOfListOfFloat[3][0]))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(listOfListOfFloat[3][1]))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(listOfListOfFloat[3][2]))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(listOfListOfFloat[4][0])
XSDataMatrixDoubleU.setM12(listOfListOfFloat[4][1])
XSDataMatrixDoubleU.setM13(listOfListOfFloat[4][2])
XSDataMatrixDoubleU.setM21(listOfListOfFloat[5][0])
XSDataMatrixDoubleU.setM22(listOfListOfFloat[5][1])
XSDataMatrixDoubleU.setM23(listOfListOfFloat[5][2])
XSDataMatrixDoubleU.setM31(listOfListOfFloat[6][0])
XSDataMatrixDoubleU.setM32(listOfListOfFloat[6][1])
XSDataMatrixDoubleU.setM33(listOfListOfFloat[6][2])
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(listOfListOfFloat[7][0]))
xsDataCellRefined.setLength_b(XSDataLength(listOfListOfFloat[7][1]))
xsDataCellRefined.setLength_c(XSDataLength(listOfListOfFloat[7][2]))
xsDataCellRefined.setAngle_alpha(XSDataAngle(listOfListOfFloat[7][3]))
xsDataCellRefined.setAngle_beta(XSDataAngle(listOfListOfFloat[7][4]))
xsDataCellRefined.setAngle_gamma(XSDataAngle(listOfListOfFloat[7][5]))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def generateXSDataMOSFLMInputGeneratePrediction(
xsDataGeneratePredictionInput):
"""
Translation from XSDataGeneratePredictionInput to XSDataMOSFLMInputGeneratePrediction.
"""
EDVerbose.DEBUG(
"EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputGeneratePrediction"
)
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
from XSDataMOSFLMv10 import XSDataMOSFLMImage
from XSDataMOSFLMv10 import XSDataMOSFLMNewmat
from XSDataMOSFLMv10 import XSDataMOSFLMMissettingsAngles
from XSDataMOSFLMv10 import XSDataMOSFLMInputGeneratePrediction
xsDataIndexingSolutionSelected = xsDataGeneratePredictionInput.getSelectedIndexingSolution(
)
xsDataCollection = xsDataGeneratePredictionInput.getDataCollection()
xsDataSubWedge = xsDataCollection.getSubWedge()[0]
xsDataImageList = xsDataSubWedge.getImage()
xsDataImageFirst = xsDataImageList[0]
xsDataCrystal = xsDataIndexingSolutionSelected.getCrystal()
xsDataOrientation = xsDataIndexingSolutionSelected.getOrientation()
xsDataExperimentalCondition = xsDataIndexingSolutionSelected.getExperimentalConditionRefined(
)
xsDataDetector = xsDataExperimentalCondition.getDetector()
xsDataBeam = xsDataExperimentalCondition.getBeam()
xsDataMatrixA = xsDataOrientation.getMatrixA()
xsDataMatrixU = xsDataOrientation.getMatrixU()
xsDataCell = xsDataCrystal.getCell()
xsDataMOSFLMInputGeneratePrediction = XSDataMOSFLMInputGeneratePrediction(
)
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
xsDataMOSFLMNewmat.setRefinedCell(xsDataCell)
xsDataMOSFLMNewmat.setAMatrix(xsDataMatrixA)
xsDataMOSFLMNewmat.setUMatrix(xsDataMatrixU)
xsDataMOSFLMInputGeneratePrediction.setMatrix(xsDataMOSFLMNewmat)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(0.0))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(xsDataDetector.getBeamPositionX())
xsDataMOSFLMBeamPosition.setY(xsDataDetector.getBeamPositionY())
xsDataMOSFLMInputGeneratePrediction.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputGeneratePrediction.setMosaicity(
xsDataCrystal.getMosaicity())
xsDataMOSFLMInputGeneratePrediction.setSymmetry(
xsDataCrystal.getSpaceGroup().getName())
strPathFirst = xsDataImageFirst.getPath().getValue()
strDirectoryFirst = os.path.dirname(strPathFirst)
strFilenameFirst = os.path.basename(strPathFirst)
xsDataMOSFLMInputGeneratePrediction.setWavelength(
xsDataBeam.getWavelength())
xsDataMOSFLMInputGeneratePrediction.setDistance(
xsDataDetector.getDistance())
xsDataMOSFLMInputGeneratePrediction.setDirectory(
XSDataString(strDirectoryFirst))
xsDataMOSFLMDetector = EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector(
xsDataDetector)
xsDataMOSFLMInputGeneratePrediction.setDetector(xsDataMOSFLMDetector)
# The MOSFLM plugin can only handle one image
xsDataImage = xsDataSubWedge.getImage()[0]
xsDataGoniostat = xsDataSubWedge.getExperimentalCondition(
).getGoniostat()
iImageNumber = xsDataImage.getNumber().getValue()
if xsDataDetector.type.value == "eiger2_16m":
strMOSFLMTemplate = EDUtilsImage.getH5MasterTemplate(
strFilenameFirst, iImageNumber)
else:
strMOSFLMTemplate = EDUtilsImage.getTemplate(strFilenameFirst, "#")
xsDataMOSFLMInputGeneratePrediction.setTemplate(
XSDataString(strMOSFLMTemplate))
xsDataMOSFLMImage = XSDataMOSFLMImage()
xsDataMOSFLMImage.setNumber(XSDataInteger(iImageNumber))
fOscillationStart = xsDataGoniostat.getRotationAxisStart().getValue()
fOscillationRange = xsDataGoniostat.getOscillationWidth().getValue()
xsDataMOSFLMImage.setRotationAxisStart(XSDataAngle(fOscillationStart))
xsDataMOSFLMImage.setRotationAxisEnd(
XSDataAngle(fOscillationStart + fOscillationRange))
xsDataMOSFLMInputGeneratePrediction.setImage(xsDataMOSFLMImage)
return xsDataMOSFLMInputGeneratePrediction
def getDataMOSFLMNewmat(self, _strNewmatFileName=None):
self.DEBUG("EDPluginMOSFLMv10.getDataMOSFLMNewmat")
xsDataMOSFLMNewmat = None
strNewmatFileName = None
listOfListOfFloat = []
if (_strNewmatFileName == None):
strNewmatFileName = self.getNewmatFileName()
else:
strNewmatFileName = _strNewmatFileName
strNewmat = None
try:
strNewmat = self.readProcessFile(strNewmatFileName)
except:
strError = self.readProcessErrorLogFile()
if (strError is not None) and (strError != ""):
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat: %s : error reading newmat file : %s" % \
(self.getClassName(), strError)
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat : Cannot read MOSFLM NEWMAT file : " + strNewmatFileName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
# print strNewmat
if (strNewmat is not None):
listLine = strNewmat.split("\n")
# Convert into list of lists of float
for strLine in listLine:
if not strLine.startswith("SYMM"):
listOfListOfFloat.append(
self.splitStringIntoListOfFloats(strLine))
# Fill in the data
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(listOfListOfFloat[0][0])
XSDataMatrixDoubleA.setM12(listOfListOfFloat[0][1])
XSDataMatrixDoubleA.setM13(listOfListOfFloat[0][2])
XSDataMatrixDoubleA.setM21(listOfListOfFloat[1][0])
XSDataMatrixDoubleA.setM22(listOfListOfFloat[1][1])
XSDataMatrixDoubleA.setM23(listOfListOfFloat[1][2])
XSDataMatrixDoubleA.setM31(listOfListOfFloat[2][0])
XSDataMatrixDoubleA.setM32(listOfListOfFloat[2][1])
XSDataMatrixDoubleA.setM33(listOfListOfFloat[2][2])
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(
XSDataAngle(listOfListOfFloat[3][0]))
xsDataMOSFLMMissettingsAngles.setPhiy(
XSDataAngle(listOfListOfFloat[3][1]))
xsDataMOSFLMMissettingsAngles.setPhiz(
XSDataAngle(listOfListOfFloat[3][2]))
xsDataMOSFLMNewmat.setMissettingAngles(
xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(listOfListOfFloat[4][0])
XSDataMatrixDoubleU.setM12(listOfListOfFloat[4][1])
XSDataMatrixDoubleU.setM13(listOfListOfFloat[4][2])
XSDataMatrixDoubleU.setM21(listOfListOfFloat[5][0])
XSDataMatrixDoubleU.setM22(listOfListOfFloat[5][1])
XSDataMatrixDoubleU.setM23(listOfListOfFloat[5][2])
XSDataMatrixDoubleU.setM31(listOfListOfFloat[6][0])
XSDataMatrixDoubleU.setM32(listOfListOfFloat[6][1])
XSDataMatrixDoubleU.setM33(listOfListOfFloat[6][2])
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(
listOfListOfFloat[7][0]))
xsDataCellRefined.setLength_b(XSDataLength(
listOfListOfFloat[7][1]))
xsDataCellRefined.setLength_c(XSDataLength(
listOfListOfFloat[7][2]))
xsDataCellRefined.setAngle_alpha(
XSDataAngle(listOfListOfFloat[7][3]))
xsDataCellRefined.setAngle_beta(
XSDataAngle(listOfListOfFloat[7][4]))
xsDataCellRefined.setAngle_gamma(
XSDataAngle(listOfListOfFloat[7][5]))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def generateXSDataMOSFLMInputGeneratePrediction(xsDataGeneratePredictionInput):
"""
Translation from XSDataGeneratePredictionInput to XSDataMOSFLMInputGeneratePrediction.
"""
EDVerbose.DEBUG("EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputGeneratePrediction")
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
from XSDataMOSFLMv10 import XSDataMOSFLMImage
from XSDataMOSFLMv10 import XSDataMOSFLMNewmat
from XSDataMOSFLMv10 import XSDataMOSFLMMissettingsAngles
from XSDataMOSFLMv10 import XSDataMOSFLMInputGeneratePrediction
xsDataIndexingSolutionSelected = xsDataGeneratePredictionInput.getSelectedIndexingSolution()
xsDataCollection = xsDataGeneratePredictionInput.getDataCollection()
xsDataSubWedge = xsDataCollection.getSubWedge()[0]
xsDataImageList = xsDataSubWedge.getImage()
xsDataImageFirst = xsDataImageList[0]
xsDataCrystal = xsDataIndexingSolutionSelected.getCrystal()
xsDataOrientation = xsDataIndexingSolutionSelected.getOrientation()
xsDataExperimentalCondition = xsDataIndexingSolutionSelected.getExperimentalConditionRefined()
xsDataDetector = xsDataExperimentalCondition.getDetector()
xsDataBeam = xsDataExperimentalCondition.getBeam()
xsDataMatrixA = xsDataOrientation.getMatrixA()
xsDataMatrixU = xsDataOrientation.getMatrixU()
xsDataCell = xsDataCrystal.getCell()
xsDataMOSFLMInputGeneratePrediction = XSDataMOSFLMInputGeneratePrediction()
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
xsDataMOSFLMNewmat.setRefinedCell(xsDataCell)
xsDataMOSFLMNewmat.setAMatrix(xsDataMatrixA)
xsDataMOSFLMNewmat.setUMatrix(xsDataMatrixU)
xsDataMOSFLMInputGeneratePrediction.setMatrix(xsDataMOSFLMNewmat)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(0.0))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(xsDataDetector.getBeamPositionX())
xsDataMOSFLMBeamPosition.setY(xsDataDetector.getBeamPositionY())
xsDataMOSFLMInputGeneratePrediction.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputGeneratePrediction.setMosaicity(xsDataCrystal.getMosaicity())
xsDataMOSFLMInputGeneratePrediction.setSymmetry(xsDataCrystal.getSpaceGroup().getName())
strPathFirst = xsDataImageFirst.getPath().getValue()
strDirectoryFirst = os.path.dirname(strPathFirst)
strFilenameFirst = os.path.basename(strPathFirst)
xsDataMOSFLMInputGeneratePrediction.setWavelength(xsDataBeam.getWavelength())
xsDataMOSFLMInputGeneratePrediction.setDistance(xsDataDetector.getDistance())
xsDataMOSFLMInputGeneratePrediction.setDirectory(XSDataString(strDirectoryFirst))
xsDataMOSFLMDetector = EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector(xsDataDetector)
xsDataMOSFLMInputGeneratePrediction.setDetector(xsDataMOSFLMDetector)
strMOSFLMTemplate = EDUtilsImage.getTemplate(strFilenameFirst, "#")
xsDataMOSFLMInputGeneratePrediction.setTemplate(XSDataString(strMOSFLMTemplate))
# The MOSFLM plugin can only handle one image
xsDataImage = xsDataSubWedge.getImage()[0]
xsDataGoniostat = xsDataSubWedge.getExperimentalCondition().getGoniostat()
xsDataMOSFLMImage = XSDataMOSFLMImage()
iImageNumber = xsDataImage.getNumber().getValue()
xsDataMOSFLMImage.setNumber(XSDataInteger(iImageNumber))
fOscillationStart = xsDataGoniostat.getRotationAxisStart().getValue()
fOscillationRange = xsDataGoniostat.getOscillationWidth().getValue()
xsDataMOSFLMImage.setRotationAxisStart(XSDataAngle(fOscillationStart))
xsDataMOSFLMImage.setRotationAxisEnd(XSDataAngle(fOscillationStart + fOscillationRange))
xsDataMOSFLMInputGeneratePrediction.setImage(xsDataMOSFLMImage)
return xsDataMOSFLMInputGeneratePrediction
def generateXSDataMOSFLMInputIntegration(_xsDataIntegrationInput):
"""
Translation from XSDataIntegrationInput to XSDataMOSFLMInputIntegration.
"""
EDVerbose.DEBUG(
"EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration")
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
from XSDataMOSFLMv10 import XSDataMOSFLMNewmat
from XSDataMOSFLMv10 import XSDataMOSFLMMissettingsAngles
xsDataCrystalRefined = _xsDataIntegrationInput.getCrystalRefined()
xsDataIndexingSolutionSelected = _xsDataIntegrationInput.getSelectedIndexingSolution(
)
if (xsDataCrystalRefined is None):
xsDataCrystalRefined = xsDataIndexingSolutionSelected.getCrystal()
xsDataCollection = _xsDataIntegrationInput.getDataCollection()
xsDataSubWedge = xsDataCollection.getSubWedge()[0]
xsDataImageList = xsDataSubWedge.getImage()
xsDataImageFirst = xsDataImageList[0]
xsDataGoniostat = xsDataSubWedge.getExperimentalCondition(
).getGoniostat()
xsDataCrystal = xsDataIndexingSolutionSelected.getCrystal()
xsDataOrientation = xsDataIndexingSolutionSelected.getOrientation()
xsDataExperimentalCondition = xsDataIndexingSolutionSelected.getExperimentalConditionRefined(
)
xsDataDetector = xsDataExperimentalCondition.getDetector()
xsDataBeam = xsDataExperimentalCondition.getBeam()
xsDataMatrixA = xsDataOrientation.getMatrixA()
xsDataMatrixU = xsDataOrientation.getMatrixU()
xsDataCell = xsDataCrystal.getCell()
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration()
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
xsDataMOSFLMNewmat.setRefinedCell(xsDataCell)
xsDataMOSFLMNewmat.setAMatrix(xsDataMatrixA)
xsDataMOSFLMNewmat.setUMatrix(xsDataMatrixU)
xsDataMOSFLMInputIntegration.setMatrix(xsDataMOSFLMNewmat)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(0.0))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(xsDataDetector.getBeamPositionX())
xsDataMOSFLMBeamPosition.setY(xsDataDetector.getBeamPositionY())
xsDataMOSFLMInputIntegration.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputIntegration.setMosaicity(xsDataCrystal.getMosaicity())
xsDataMOSFLMInputIntegration.setSymmetry(
xsDataCrystal.getSpaceGroup().getName())
strPathFirst = xsDataImageFirst.getPath().getValue()
strDirectoryFirst = os.path.dirname(strPathFirst)
strFilenameFirst = os.path.basename(strPathFirst)
fOscillationRange = xsDataGoniostat.getOscillationWidth().getValue()
xsDataMOSFLMInputIntegration.setWavelength(xsDataBeam.getWavelength())
xsDataMOSFLMInputIntegration.setDistance(xsDataDetector.getDistance())
xsDataMOSFLMInputIntegration.setDirectory(
XSDataString(strDirectoryFirst))
xsDataMOSFLMInputIntegration.setOscillationWidth(
XSDataAngle(fOscillationRange))
xsDataMOSFLMDetector = EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector(
xsDataDetector)
xsDataMOSFLMInputIntegration.setDetector(xsDataMOSFLMDetector)
strMOSFLMTemplate = EDUtilsImage.getTemplate(strFilenameFirst, "#")
xsDataMOSFLMInputIntegration.setTemplate(
XSDataString(strMOSFLMTemplate))
iImageStart = None
iImageEnd = None
for xsDataImage in xsDataImageList:
iImageNumber = xsDataImage.getNumber().getValue()
if (iImageStart is None):
iImageStart = iImageNumber
elif (iImageStart > iImageNumber):
iImageStart = iImageNumber
if (iImageEnd is None):
iImageEnd = iImageNumber
elif (iImageEnd < iImageNumber):
iImageEnd = iImageNumber
xsDataMOSFLMInputIntegration.setImageStart(XSDataInteger(iImageStart))
xsDataMOSFLMInputIntegration.setImageEnd(XSDataInteger(iImageEnd))
xsDataMOSFLMInputIntegration.setRotationAxisStart(
xsDataGoniostat.getRotationAxisStart())
# print xsDataMOSFLMInputIntegration.marshal()
return xsDataMOSFLMInputIntegration