def testCheckParameters(self):
strXMLInput = self.readAndParseFile(self.strPathToDataInputFile)
xsDataInput = XSDataIndexingResult.parseString(strXMLInput)
edPluginExecEvaluationIndexing = self.createPlugin()
edPluginExecEvaluationIndexing.setDataInput(xsDataInput,
"indexingResult")
edPluginExecEvaluationIndexing.checkParameters()
def testExecute(self):
self.run()
# Checks that there are no error messages
plugin = self.getPlugin()
# Checks the expected result
strExpectedOutput = self.readAndParseFile(self.strReferenceDataOutputFile)
# Check that all the paths in the prediction results actaully exists
from XSDataMXv1 import XSDataIndexingResult
xsDataIndexingResultObtained = plugin.getDataOutput()
xsDataIndexingResultExpected = XSDataIndexingResult.parseString(strExpectedOutput)
xsDataGeneratePredictionResult = xsDataIndexingResultObtained.getPredictionResult()
for predictionImage in xsDataGeneratePredictionResult.getPredictionImage():
strImagePath = predictionImage.getPath().getValue()
bImageExists = os.path.exists(strImagePath)
EDAssert.equal(True, bImageExists)
# Check that we found the right space group
xsDataIndexingSolutionSelectedObtained = xsDataIndexingResultObtained.getSelectedSolution()
xsDataIndexingSolutionSelectedExpected = xsDataIndexingResultExpected.getSelectedSolution()
xsDataCrystalObtained = xsDataIndexingSolutionSelectedObtained.getCrystal()
xsDataCrystalExpected = xsDataIndexingSolutionSelectedExpected.getCrystal()
xsDataSpaceGroupObtained = xsDataCrystalObtained.getSpaceGroup()
xsDataSpaceGroupExpected = xsDataCrystalExpected.getSpaceGroup()
strSpacegroupNameObtained = xsDataSpaceGroupObtained.getName().getValue()
strSpacegroupNameExpected = xsDataSpaceGroupExpected.getName().getValue()
EDAssert.equal(strSpacegroupNameExpected, strSpacegroupNameObtained)
def testGenerateXSDataIndexingResult(self):
strFilename = "XSDataMOSFLMOutputIndexing_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLMOSFLMOutputIndexing = EDUtilsTest.readAndParseFile(strPath)
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIndexing
xsDataMOSFLMOutputIndexing = XSDataMOSFLMOutputIndexing.parseString(strXMLMOSFLMOutputIndexing)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataIndexingResult = EDHandlerXSDataMOSFLMv10.generateXSDataIndexingResult(xsDataMOSFLMOutputIndexing)
strReferenceFilename = "XSDataIndexingResult_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename)
strXMLIndexingOutputReference = EDUtilsTest.readAndParseFile(strReferencePath)
from XSDataMXv1 import XSDataIndexingResult
xsdataIndexingResultReference = XSDataIndexingResult.parseString(strXMLIndexingOutputReference)
EDAssert.equal(xsdataIndexingResultReference.marshal(), xsDataIndexingResult.marshal())
def testGenerateXSDataIndexingResult(self):
"""
This method tests the generation of an XSDataIndexingResult object given an XSDataResultLabelit object.
"""
strPath = os.path.join(self.strDataPath, self.strReferenceOutputFile)
strXMLResultLabelit = EDUtilsTest.readAndParseFile(strPath)
EDFactoryPluginStatic.loadModule("XSDataLabelitv10")
from XSDataLabelitv10 import XSDataResultLabelit
xsDataResultLabelit = XSDataResultLabelit.parseString(strXMLResultLabelit)
from EDHandlerXSDataLabelitv10 import EDHandlerXSDataLabelitv10
xsDataIndexingResult = EDHandlerXSDataLabelitv10.generateXSDataIndexingResult(xsDataResultLabelit)
strReferencePath = os.path.join(self.strDataPath, "XSDataIndexingResult_reference.xml")
strIndexingResultReferenceXML = EDUtilsTest.readAndParseFile(strReferencePath)
from XSDataMXv1 import XSDataIndexingResult
xsDataIndexingResultReference = XSDataIndexingResult.parseString(strIndexingResultReferenceXML)
EDAssert.equal(xsDataIndexingResultReference.marshal(), xsDataIndexingResult.marshal())
def testExecute(self):
self.run()
# Checks that there are no error messages
plugin = self.getPlugin()
# Checks the expected result
strExpectedOutput = self.readAndParseFile(
self.strReferenceDataOutputFile)
# Check that all the paths in the prediction results actaully exists
from XSDataMXv1 import XSDataIndexingResult
xsDataIndexingResultObtained = plugin.getDataOutput()
xsDataIndexingResultExpected = XSDataIndexingResult.parseString(
strExpectedOutput)
xsDataGeneratePredictionResult = xsDataIndexingResultObtained.getPredictionResult(
)
for predictionImage in xsDataGeneratePredictionResult.getPredictionImage(
):
strImagePath = predictionImage.getPath().getValue()
bImageExists = os.path.exists(strImagePath)
EDAssert.equal(True, bImageExists)
# Check that we found the right space group
xsDataIndexingSolutionSelectedObtained = xsDataIndexingResultObtained.getSelectedSolution(
)
xsDataIndexingSolutionSelectedExpected = xsDataIndexingResultExpected.getSelectedSolution(
)
xsDataCrystalObtained = xsDataIndexingSolutionSelectedObtained.getCrystal(
)
xsDataCrystalExpected = xsDataIndexingSolutionSelectedExpected.getCrystal(
)
xsDataSpaceGroupObtained = xsDataCrystalObtained.getSpaceGroup()
xsDataSpaceGroupExpected = xsDataCrystalExpected.getSpaceGroup()
strSpacegroupNameObtained = xsDataSpaceGroupObtained.getName(
).getValue()
strSpacegroupNameExpected = xsDataSpaceGroupExpected.getName(
).getValue()
EDAssert.equal(strSpacegroupNameExpected, strSpacegroupNameObtained)
def testGenerateXSDataIndexingResult(self):
strFilename = "XSDataMOSFLMOutputIndexing_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLMOSFLMOutputIndexing = EDUtilsTest.readAndParseFile(strPath)
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIndexing
xsDataMOSFLMOutputIndexing = XSDataMOSFLMOutputIndexing.parseString(
strXMLMOSFLMOutputIndexing)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataIndexingResult = EDHandlerXSDataMOSFLMv10.generateXSDataIndexingResult(
xsDataMOSFLMOutputIndexing)
strReferenceFilename = "XSDataIndexingResult_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath,
strReferenceFilename)
strXMLIndexingOutputReference = EDUtilsTest.readAndParseFile(
strReferencePath)
from XSDataMXv1 import XSDataIndexingResult
xsdataIndexingResultReference = XSDataIndexingResult.parseString(
strXMLIndexingOutputReference)
EDAssert.equal(xsdataIndexingResultReference.marshal(),
xsDataIndexingResult.marshal())
def testCheckParameters(self):
strXMLInput = self.readAndParseFile(self.strPathToDataInputFile)
xsDataInput = XSDataIndexingResult.parseString(strXMLInput)
edPluginExecEvaluationIndexing = self.createPlugin()
edPluginExecEvaluationIndexing.setDataInput(xsDataInput, "indexingResult")
edPluginExecEvaluationIndexing.checkParameters()
