def testGenerateIntegrationShortSummary(self):
edPluginControlIntegrationv10 = self.createPlugin()
strReferenceOutputFile = os.path.join(self.getPluginTestsDataHome(), "XSDataIntegrationResult_reference.xml")
strXML = self.readAndParseFile(strReferenceOutputFile)
xsDataIntegrationResult = XSDataIntegrationResult.parseString(strXML)
edPluginControlIntegrationv10.generateIntegrationShortSummary(xsDataIntegrationResult)
for strLine in edPluginControlIntegrationv10.getDataOutput("integrationShortSummary")[0].getValue().split("\n"):
EDVerbose.unitTest(strLine)
def finallyProcess(self, _edObject=None):
EDPluginControl.finallyProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.finallyProcess")
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
for (iSubWedgeNumber, edPluginIntegration) in self.__edPluginIntegrationList:
xsDataMOSFLMOutputIntegration = edPluginIntegration.getDataOutput()
if (xsDataMOSFLMOutputIntegration is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult = None
try:
xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(xsDataMOSFLMOutputIntegration, self.__xsDataExperimentalConditionRefined)
except Exception as error:
strWarningMessage = str(error)
self.addWarningMessage(strWarningMessage)
self.WARNING(strWarningMessage)
# self.setFailure()
if (xsDataIntegrationSubWedgeResult is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult.setSubWedgeNumber(XSDataInteger(iSubWedgeNumber))
xsDataStatisticsIntegration = xsDataIntegrationSubWedgeResult.getStatistics()
if xsDataStatisticsIntegration.getRMSSpotDeviation() is not None:
fRMSSpotDeviation = xsDataStatisticsIntegration.getRMSSpotDeviation().getValue()
if (self.__fMaxRMSSpotDeviation is not None):
if (self.__fMaxRMSSpotDeviation < fRMSSpotDeviation):
iImageStart = edPluginIntegration.getDataInput().getImageStart().getValue()
iImageEnd = edPluginIntegration.getDataInput().getImageEnd().getValue()
errorMessage = EDMessage.ERROR_DATA_HANDLER_02 % ("EDPluginControlIntegrationv10.postProcess", \
"MOSFLM Integration : RMS spot deviation (%.3f [mm]) larger than max value from configuration (%.3f [mm]) for images %d to %d" % \
(fRMSSpotDeviation, self.__fMaxRMSSpotDeviation, iImageStart, iImageEnd))
self.error(errorMessage)
self.addErrorMessage(errorMessage)
if (xsDataIntegrationSubWedgeResult is not None):
if (self.__xsDataIntegrationResult is None):
self.__xsDataIntegrationResult = XSDataIntegrationResult()
self.__xsDataIntegrationResult.addIntegrationSubWedgeResult(xsDataIntegrationSubWedgeResult)
bSuccess = False
for integrationSubWedgeResult in self.__xsDataIntegrationResult.integrationSubWedgeResult:
if integrationSubWedgeResult.statistics.iOverSigmaOverall is not None:
bSuccess = True
break
if not bSuccess:
strErrorMessage = "MOSFLM integration failed for all images"
self.ERROR(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
self.setDataOutput(self.__xsDataIntegrationResult)
if self.__xsDataIntegrationResult is not None:
self.generateIntegrationShortSummary(self.__xsDataIntegrationResult)
class EDPluginControlIntegrationv10(EDPluginControl):
"""
The Plugin that controls the MOSFLM integration.
"""
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
self.setXSDataInputClass(XSDataIntegrationInput)
self.__strPluginIntegrationName = "EDPluginMOSFLMIntegrationv10"
self.__edPluginIntegrationList = []
self.__iNoSubwedges = None
self.__strCONF_CONTROL_INTEGRATION_MAX_RMS = "maxRMSSpotDeviation"
self.__fMaxRMSSpotDeviation = None
self.__xsDataExperimentalConditionRefined = None
self.__xsDataIntegrationResult = None
def checkParameters(self):
"""
Checks the mandatory parameters
"""
self.DEBUG("EDPluginControlIntegrationv10.checkParameters")
self.checkMandatoryParameters(self.getDataInput(),
"Data Input is None")
self.checkMandatoryParameters(self.getDataInput().getDataCollection(),
"dataCollection")
self.checkMandatoryParameters(
self.getDataInput().getSelectedIndexingSolution(),
"selectedIndexingSolution")
def configure(self):
EDPluginControl.configure(self)
self.DEBUG("EDPluginControlIntegrationv10.configure")
strMaxRMSSpotDeviation = self.config.get(
self.__strCONF_CONTROL_INTEGRATION_MAX_RMS)
if (strMaxRMSSpotDeviation == None):
self.DEBUG(
"EDPluginControlIntegrationv10.configure: No configuration parameter found for: "
+ self.__strCONF_CONTROL_INTEGRATION_MAX_RMS +
", no default value.")
else:
self.setMaxRMSSpotDeviation(float(strMaxRMSSpotDeviation))
def setMaxRMSSpotDeviation(self, _fMaxRMSSpotDeviation):
self.__fMaxRMSSpotDeviation = _fMaxRMSSpotDeviation
def getMaxRMSSpotDeviation(self):
return self.__fMaxRMSSpotDeviation
def preProcess(self, _edObject=None):
"""
Gets the Configuration Parameters, if found, overrides default parameters
"""
EDPluginControl.preProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.preProcess...")
xsDataIntegrationInput = self.getDataInput()
xsDataSelectedIndexingSolution = xsDataIntegrationInput.getSelectedIndexingSolution(
)
self.__xsDataExperimentalConditionRefined = xsDataIntegrationInput.getExperimentalConditionRefined(
)
# To be changed (see bug #40)
if (self.__xsDataExperimentalConditionRefined is None):
self.__xsDataExperimentalConditionRefined = xsDataSelectedIndexingSolution.getExperimentalConditionRefined(
)
xsDataCollection = xsDataIntegrationInput.getDataCollection()
xsDataSubWedgeList = xsDataCollection.getSubWedge()
self.__edPluginIntegrationList = []
iIndex = 0
for xsDataSubWedge in xsDataSubWedgeList:
iSubWedgeNumber = iIndex
if (xsDataSubWedge.getSubWedgeNumber() is not None):
# Use the incoming subwedge number if it exists
iSubWedgeNumber = xsDataSubWedge.getSubWedgeNumber().getValue()
edPluginIntegration = self.loadPlugin(
self.__strPluginIntegrationName)
if (not edPluginIntegration is None):
iIndex += 1
xsDataIntegrationInputSubWedge = XSDataIntegrationInput()
xsDataIntegrationInputSubWedge.setSelectedIndexingSolution(
XSDataIndexingSolutionSelected.parseString(
xsDataSelectedIndexingSolution.marshal()))
xsDataIntegrationInputSubWedge.setExperimentalConditionRefined(
XSDataExperimentalCondition.parseString(
self.__xsDataExperimentalConditionRefined.marshal()))
xsDataCollection = XSDataCollection()
xsDataCollection.addSubWedge(xsDataSubWedge)
xsDataIntegrationInputSubWedge.setDataCollection(
xsDataCollection)
try:
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(
xsDataIntegrationInputSubWedge)
edPluginIntegration.setDataInput(
xsDataMOSFLMInputIntegration)
edPluginIntegration.setBaseName(
"%s-%02d" % (self.__strPluginIntegrationName, iIndex))
edPluginIntegration.connectSUCCESS(
self.doSuccessActionIntegration)
edPluginIntegration.connectFAILURE(
self.doFailureActionIntegration)
# Here we store the sub wedge number for use in the results
self.__edPluginIntegrationList.append(
[iSubWedgeNumber, edPluginIntegration])
except Exception as strErrorMessage:
self.addErrorMessage(strErrorMessage)
self.ERROR(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginControlIntegrationv10.preProcess: could not load plugin %s" % self.__strPluginIntegrationName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
def process(self, _edObject=None):
EDPluginControl.process(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.process")
for (iSubWedgeNumber,
edPluginIntegration) in self.__edPluginIntegrationList:
self.addPluginToActionCluster(edPluginIntegration)
self.executeActionCluster()
self.synchronizeActionCluster()
if self.isFailure():
self.generateExecutiveSummary(self)
def doSuccessActionIntegration(self, _edPlugin=None):
self.DEBUG("EDPluginControlIntegrationv10.doSuccessActionIntegration")
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlIntegrationv10.doSuccessActionIntegration")
def doFailureActionIntegration(self, _edPlugin=None):
self.DEBUG("EDPluginControlIntegrationv10.doFailureActionIntegration")
self.retrieveFailureMessages(
_edPlugin,
"EDPluginControlIntegrationv10.doFailureActionIntegration")
# self.setFailure()
def finallyProcess(self, _edObject=None):
EDPluginControl.finallyProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.finallyProcess")
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
for (iSubWedgeNumber,
edPluginIntegration) in self.__edPluginIntegrationList:
xsDataMOSFLMOutputIntegration = edPluginIntegration.getDataOutput()
if (xsDataMOSFLMOutputIntegration is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult = None
try:
xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(
xsDataMOSFLMOutputIntegration,
self.__xsDataExperimentalConditionRefined)
except Exception as error:
strWarningMessage = str(error)
self.addWarningMessage(strWarningMessage)
self.WARNING(strWarningMessage)
# self.setFailure()
if (xsDataIntegrationSubWedgeResult is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult.setSubWedgeNumber(
XSDataInteger(iSubWedgeNumber))
xsDataStatisticsIntegration = xsDataIntegrationSubWedgeResult.getStatistics(
)
if xsDataStatisticsIntegration.getRMSSpotDeviation(
) is not None:
fRMSSpotDeviation = xsDataStatisticsIntegration.getRMSSpotDeviation(
).getValue()
if (self.__fMaxRMSSpotDeviation is not None):
if (self.__fMaxRMSSpotDeviation <
fRMSSpotDeviation):
iImageStart = edPluginIntegration.getDataInput(
).getImageStart().getValue()
iImageEnd = edPluginIntegration.getDataInput(
).getImageEnd().getValue()
errorMessage = EDMessage.ERROR_DATA_HANDLER_02 % ("EDPluginControlIntegrationv10.postProcess", \
"MOSFLM Integration : RMS spot deviation (%.3f [mm]) larger than max value from configuration (%.3f [mm]) for images %d to %d" % \
(fRMSSpotDeviation, self.__fMaxRMSSpotDeviation, iImageStart, iImageEnd))
self.error(errorMessage)
self.addErrorMessage(errorMessage)
if (xsDataIntegrationSubWedgeResult is not None):
if (self.__xsDataIntegrationResult is None):
self.__xsDataIntegrationResult = XSDataIntegrationResult(
)
self.__xsDataIntegrationResult.addIntegrationSubWedgeResult(
xsDataIntegrationSubWedgeResult)
bSuccess = False
for integrationSubWedgeResult in self.__xsDataIntegrationResult.integrationSubWedgeResult:
if integrationSubWedgeResult.statistics.iOverSigmaOverall is not None:
bSuccess = True
break
if not bSuccess:
strErrorMessage = "MOSFLM integration failed for all images"
self.ERROR(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
self.setDataOutput(self.__xsDataIntegrationResult)
if self.__xsDataIntegrationResult is not None:
self.generateIntegrationShortSummary(
self.__xsDataIntegrationResult)
def generateExecutiveSummary(self, _edPlugin):
"""
Generates a summary of the execution of the plugin.
"""
self.DEBUG("EDPluginControlIntegrationv10.generateExecutiveSummary")
self.addExecutiveSummaryLine("Summary of integration:")
self.addErrorWarningMessagesToExecutiveSummary(
"Integration warning/error messages:")
for (iSubWedgeNumber,
edPluginIntegration) in self.__edPluginIntegrationList:
if (edPluginIntegration is not None):
if (edPluginIntegration.getDataOutput() is not None):
self.appendExecutiveSummary(edPluginIntegration,
"MOSFLM : ")
def generateIntegrationShortSummary(self, _xsDataIntegrationResult):
"""
Generates a short summary of the MOSFLM integration(s)
"""
self.DEBUG(
"EDPluginControlIntegrationv10.generateIntegrationShortSummary")
strIntegrationShortSummary = ""
for xsDataIntegrationSubWedgeResult in _xsDataIntegrationResult.getIntegrationSubWedgeResult(
):
iSubWedgeNumber = xsDataIntegrationSubWedgeResult.getSubWedgeNumber(
).getValue()
strIntegrationShortSummary += "Integration: %d " % iSubWedgeNumber
xsDataStatisticsIntegration = xsDataIntegrationSubWedgeResult.getStatistics(
)
if xsDataStatisticsIntegration.getNumberOfFullyRecordedReflections(
) is None:
strIntegrationShortSummary += "FAILED\n"
else:
iNoFull = xsDataStatisticsIntegration.getNumberOfFullyRecordedReflections(
).getValue()
strIntegrationShortSummary += "no full: %d, " % iNoFull
iNoPartial = xsDataStatisticsIntegration.getNumberOfPartialReflections(
).getValue()
strIntegrationShortSummary += "part: %d, " % iNoPartial
iNoBad = xsDataStatisticsIntegration.getNumberOfBadReflections(
).getValue()
iNoNegative = xsDataStatisticsIntegration.getNumberOfNegativeReflections(
).getValue()
iNoOverlapped = xsDataStatisticsIntegration.getNumberOfOverlappedReflections(
).getValue()
strIntegrationShortSummary += "bad/neg/ovrlp: %d, " % (
iNoBad + iNoNegative + iNoOverlapped)
fRMSSpotDeviation = xsDataStatisticsIntegration.getRMSSpotDeviation(
).getValue()
strIntegrationShortSummary += "RMS dev: %.3f [mm], " % fRMSSpotDeviation
fIOverSigmaOverall = xsDataStatisticsIntegration.getIOverSigmaOverall(
).getValue()
strIntegrationShortSummary += "I/sigma overall %.1f " % fIOverSigmaOverall
fIOverSigmaAtHighestResolution = xsDataStatisticsIntegration.getIOverSigmaAtHighestResolution(
).getValue()
strIntegrationShortSummary += "at highest res %.1f" % fIOverSigmaAtHighestResolution
strIntegrationShortSummary += "\n"
for strLine in strIntegrationShortSummary.split("\n"):
self.screen(strLine)
self.setDataOutput(XSDataString(strIntegrationShortSummary),
"integrationShortSummary")
def finallyProcess(self, _edObject=None):
EDPluginControl.finallyProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.finallyProcess")
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
for (iSubWedgeNumber,
edPluginIntegration) in self.__edPluginIntegrationList:
xsDataMOSFLMOutputIntegration = edPluginIntegration.getDataOutput()
if (xsDataMOSFLMOutputIntegration is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult = None
try:
xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(
xsDataMOSFLMOutputIntegration,
self.__xsDataExperimentalConditionRefined)
except Exception as error:
strWarningMessage = str(error)
self.addWarningMessage(strWarningMessage)
self.WARNING(strWarningMessage)
# self.setFailure()
if (xsDataIntegrationSubWedgeResult is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult.setSubWedgeNumber(
XSDataInteger(iSubWedgeNumber))
xsDataStatisticsIntegration = xsDataIntegrationSubWedgeResult.getStatistics(
)
if xsDataStatisticsIntegration.getRMSSpotDeviation(
) is not None:
fRMSSpotDeviation = xsDataStatisticsIntegration.getRMSSpotDeviation(
).getValue()
if (self.__fMaxRMSSpotDeviation is not None):
if (self.__fMaxRMSSpotDeviation <
fRMSSpotDeviation):
iImageStart = edPluginIntegration.getDataInput(
).getImageStart().getValue()
iImageEnd = edPluginIntegration.getDataInput(
).getImageEnd().getValue()
errorMessage = EDMessage.ERROR_DATA_HANDLER_02 % ("EDPluginControlIntegrationv10.postProcess", \
"MOSFLM Integration : RMS spot deviation (%.3f [mm]) larger than max value from configuration (%.3f [mm]) for images %d to %d" % \
(fRMSSpotDeviation, self.__fMaxRMSSpotDeviation, iImageStart, iImageEnd))
self.error(errorMessage)
self.addErrorMessage(errorMessage)
if (xsDataIntegrationSubWedgeResult is not None):
if (self.__xsDataIntegrationResult is None):
self.__xsDataIntegrationResult = XSDataIntegrationResult(
)
self.__xsDataIntegrationResult.addIntegrationSubWedgeResult(
xsDataIntegrationSubWedgeResult)
bSuccess = False
for integrationSubWedgeResult in self.__xsDataIntegrationResult.integrationSubWedgeResult:
if integrationSubWedgeResult.statistics.iOverSigmaOverall is not None:
bSuccess = True
break
if not bSuccess:
strErrorMessage = "MOSFLM integration failed for all images"
self.ERROR(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
self.setDataOutput(self.__xsDataIntegrationResult)
if self.__xsDataIntegrationResult is not None:
self.generateIntegrationShortSummary(
self.__xsDataIntegrationResult)
class EDPluginControlIntegrationv10(EDPluginControl):
"""
The Plugin that controls the MOSFLM integration.
"""
def __init__ (self):
"""
"""
EDPluginControl.__init__(self)
self.setXSDataInputClass(XSDataIntegrationInput)
self.__strPluginIntegrationName = "EDPluginMOSFLMIntegrationv10"
self.__edPluginIntegrationList = []
self.__iNoSubwedges = None
self.__strCONF_CONTROL_INTEGRATION_MAX_RMS = "maxRMSSpotDeviation"
self.__fMaxRMSSpotDeviation = None
self.__xsDataExperimentalConditionRefined = None
self.__xsDataIntegrationResult = None
def checkParameters(self):
"""
Checks the mandatory parameters
"""
self.DEBUG("EDPluginControlIntegrationv10.checkParameters")
self.checkMandatoryParameters(self.getDataInput(), "Data Input is None")
self.checkMandatoryParameters(self.getDataInput().getDataCollection(), "dataCollection")
self.checkMandatoryParameters(self.getDataInput().getSelectedIndexingSolution(), "selectedIndexingSolution")
def configure(self):
EDPluginControl.configure(self)
self.DEBUG("EDPluginControlIntegrationv10.configure")
strMaxRMSSpotDeviation = self.config.get(self.__strCONF_CONTROL_INTEGRATION_MAX_RMS)
if(strMaxRMSSpotDeviation == None):
self.DEBUG("EDPluginControlIntegrationv10.configure: No configuration parameter found for: " + self.__strCONF_CONTROL_INTEGRATION_MAX_RMS + ", no default value.")
else:
self.setMaxRMSSpotDeviation(float(strMaxRMSSpotDeviation))
def setMaxRMSSpotDeviation(self, _fMaxRMSSpotDeviation):
self.__fMaxRMSSpotDeviation = _fMaxRMSSpotDeviation
def getMaxRMSSpotDeviation(self):
return self.__fMaxRMSSpotDeviation
def preProcess(self, _edObject=None):
"""
Gets the Configuration Parameters, if found, overrides default parameters
"""
EDPluginControl.preProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.preProcess...")
xsDataIntegrationInput = self.getDataInput()
xsDataSelectedIndexingSolution = xsDataIntegrationInput.getSelectedIndexingSolution()
self.__xsDataExperimentalConditionRefined = xsDataIntegrationInput.getExperimentalConditionRefined()
# To be changed (see bug #40)
if (self.__xsDataExperimentalConditionRefined is None):
self.__xsDataExperimentalConditionRefined = xsDataSelectedIndexingSolution.getExperimentalConditionRefined()
xsDataCollection = xsDataIntegrationInput.getDataCollection()
xsDataSubWedgeList = xsDataCollection.getSubWedge()
self.__edPluginIntegrationList = []
iIndex = 0
for xsDataSubWedge in xsDataSubWedgeList:
iSubWedgeNumber = iIndex
if (xsDataSubWedge.getSubWedgeNumber() is not None):
# Use the incoming subwedge number if it exists
iSubWedgeNumber = xsDataSubWedge.getSubWedgeNumber().getValue()
edPluginIntegration = self.loadPlugin(self.__strPluginIntegrationName)
if (not edPluginIntegration is None):
iIndex += 1
xsDataIntegrationInputSubWedge = XSDataIntegrationInput()
xsDataIntegrationInputSubWedge.setSelectedIndexingSolution(XSDataIndexingSolutionSelected.parseString(xsDataSelectedIndexingSolution.marshal()))
xsDataIntegrationInputSubWedge.setExperimentalConditionRefined(XSDataExperimentalCondition.parseString(self.__xsDataExperimentalConditionRefined.marshal()))
xsDataCollection = XSDataCollection()
xsDataCollection.addSubWedge(xsDataSubWedge)
xsDataIntegrationInputSubWedge.setDataCollection(xsDataCollection)
try:
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(xsDataIntegrationInputSubWedge)
edPluginIntegration.setDataInput(xsDataMOSFLMInputIntegration)
edPluginIntegration.setBaseName("%s-%02d" % (self.__strPluginIntegrationName, iIndex))
edPluginIntegration.connectSUCCESS(self.doSuccessActionIntegration)
edPluginIntegration.connectFAILURE(self.doFailureActionIntegration)
# Here we store the sub wedge number for use in the results
self.__edPluginIntegrationList.append([iSubWedgeNumber, edPluginIntegration])
except Exception as strErrorMessage:
self.addErrorMessage(strErrorMessage)
self.ERROR(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginControlIntegrationv10.preProcess: could not load plugin %s" % self.__strPluginIntegrationName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
def process(self, _edObject=None):
EDPluginControl.process(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.process")
for (iSubWedgeNumber, edPluginIntegration) in self.__edPluginIntegrationList:
self.addPluginToActionCluster(edPluginIntegration)
self.executeActionCluster()
self.synchronizeActionCluster()
if self.isFailure():
self.generateExecutiveSummary(self)
def doSuccessActionIntegration(self, _edPlugin=None):
self.DEBUG("EDPluginControlIntegrationv10.doSuccessActionIntegration")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlIntegrationv10.doSuccessActionIntegration")
def doFailureActionIntegration(self, _edPlugin=None):
self.DEBUG("EDPluginControlIntegrationv10.doFailureActionIntegration")
self.retrieveFailureMessages(_edPlugin, "EDPluginControlIntegrationv10.doFailureActionIntegration")
# self.setFailure()
def finallyProcess(self, _edObject=None):
EDPluginControl.finallyProcess(self, _edObject)
self.DEBUG("EDPluginControlIntegrationv10.finallyProcess")
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
for (iSubWedgeNumber, edPluginIntegration) in self.__edPluginIntegrationList:
xsDataMOSFLMOutputIntegration = edPluginIntegration.getDataOutput()
if (xsDataMOSFLMOutputIntegration is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult = None
try:
xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(xsDataMOSFLMOutputIntegration, self.__xsDataExperimentalConditionRefined)
except Exception as error:
strWarningMessage = str(error)
self.addWarningMessage(strWarningMessage)
self.WARNING(strWarningMessage)
# self.setFailure()
if (xsDataIntegrationSubWedgeResult is None):
strWarning = "MOSFLM integration error : no integration results obtained."
self.addExecutiveSummaryLine(strWarning)
self.WARNING(strWarning)
# self.setFailure()
else:
xsDataIntegrationSubWedgeResult.setSubWedgeNumber(XSDataInteger(iSubWedgeNumber))
xsDataStatisticsIntegration = xsDataIntegrationSubWedgeResult.getStatistics()
if xsDataStatisticsIntegration.getRMSSpotDeviation() is not None:
fRMSSpotDeviation = xsDataStatisticsIntegration.getRMSSpotDeviation().getValue()
if (self.__fMaxRMSSpotDeviation is not None):
if (self.__fMaxRMSSpotDeviation < fRMSSpotDeviation):
iImageStart = edPluginIntegration.getDataInput().getImageStart().getValue()
iImageEnd = edPluginIntegration.getDataInput().getImageEnd().getValue()
errorMessage = EDMessage.ERROR_DATA_HANDLER_02 % ("EDPluginControlIntegrationv10.postProcess", \
"MOSFLM Integration : RMS spot deviation (%.3f [mm]) larger than max value from configuration (%.3f [mm]) for images %d to %d" % \
(fRMSSpotDeviation, self.__fMaxRMSSpotDeviation, iImageStart, iImageEnd))
self.error(errorMessage)
self.addErrorMessage(errorMessage)
if (xsDataIntegrationSubWedgeResult is not None):
if (self.__xsDataIntegrationResult is None):
self.__xsDataIntegrationResult = XSDataIntegrationResult()
self.__xsDataIntegrationResult.addIntegrationSubWedgeResult(xsDataIntegrationSubWedgeResult)
bSuccess = False
for integrationSubWedgeResult in self.__xsDataIntegrationResult.integrationSubWedgeResult:
if integrationSubWedgeResult.statistics.iOverSigmaOverall is not None:
bSuccess = True
break
if not bSuccess:
strErrorMessage = "MOSFLM integration failed for all images"
self.ERROR(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
self.setDataOutput(self.__xsDataIntegrationResult)
if self.__xsDataIntegrationResult is not None:
self.generateIntegrationShortSummary(self.__xsDataIntegrationResult)
def generateExecutiveSummary(self, _edPlugin):
"""
Generates a summary of the execution of the plugin.
"""
self.DEBUG("EDPluginControlIntegrationv10.generateExecutiveSummary")
self.addExecutiveSummaryLine("Summary of integration:")
self.addErrorWarningMessagesToExecutiveSummary("Integration warning/error messages:")
for (iSubWedgeNumber, edPluginIntegration) in self.__edPluginIntegrationList:
if (edPluginIntegration is not None):
if (edPluginIntegration.getDataOutput() is not None):
self.appendExecutiveSummary(edPluginIntegration, "MOSFLM : ")
def generateIntegrationShortSummary(self, _xsDataIntegrationResult):
"""
Generates a short summary of the MOSFLM integration(s)
"""
self.DEBUG("EDPluginControlIntegrationv10.generateIntegrationShortSummary")
strIntegrationShortSummary = ""
for xsDataIntegrationSubWedgeResult in _xsDataIntegrationResult.getIntegrationSubWedgeResult():
iSubWedgeNumber = xsDataIntegrationSubWedgeResult.getSubWedgeNumber().getValue()
strIntegrationShortSummary += "Integration: %d " % iSubWedgeNumber
xsDataStatisticsIntegration = xsDataIntegrationSubWedgeResult.getStatistics()
if xsDataStatisticsIntegration.getNumberOfFullyRecordedReflections() is None:
strIntegrationShortSummary += "FAILED\n"
else:
iNoFull = xsDataStatisticsIntegration.getNumberOfFullyRecordedReflections().getValue()
strIntegrationShortSummary += "no full: %d, " % iNoFull
iNoPartial = xsDataStatisticsIntegration.getNumberOfPartialReflections().getValue()
strIntegrationShortSummary += "part: %d, " % iNoPartial
iNoBad = xsDataStatisticsIntegration.getNumberOfBadReflections().getValue()
iNoNegative = xsDataStatisticsIntegration.getNumberOfNegativeReflections().getValue()
iNoOverlapped = xsDataStatisticsIntegration.getNumberOfOverlappedReflections().getValue()
strIntegrationShortSummary += "bad/neg/ovrlp: %d, " % (iNoBad + iNoNegative + iNoOverlapped)
fRMSSpotDeviation = xsDataStatisticsIntegration.getRMSSpotDeviation().getValue()
strIntegrationShortSummary += "RMS dev: %.3f [mm], " % fRMSSpotDeviation
fIOverSigmaOverall = xsDataStatisticsIntegration.getIOverSigmaOverall().getValue()
strIntegrationShortSummary += "I/sigma overall %.1f " % fIOverSigmaOverall
fIOverSigmaAtHighestResolution = xsDataStatisticsIntegration.getIOverSigmaAtHighestResolution().getValue()
strIntegrationShortSummary += "at highest res %.1f" % fIOverSigmaAtHighestResolution
strIntegrationShortSummary += "\n"
for strLine in strIntegrationShortSummary.split("\n"):
self.screen(strLine)
self.setDataOutput(XSDataString(strIntegrationShortSummary), "integrationShortSummary")
