def __init__(self, parent):
self._init_ctrls(parent)
optParse=OptionParser()
optParse.add_option('-A','--ADV',action='store_const',dest='userlevel',const=1,default=0,help='Set User to Advanced',metavar='USERLEVEL')
optParse.add_option('-X','--EXP',action='store_const',dest='userlevel',const=2,default=0,help='Set User to Expert',metavar='USERLEVEL')
optParse.add_option('-H','--HOST',dest='host',type='string',help='Override hostname for computer',default=socket.gethostname(),metavar='HOST')
optParse.add_option('-D','--DEBUG',action='store_true',dest='debug',help='Run program in debug mode',default=False,metavar='DEBUG')
optParse.add_option('-L','--LOG',action='store_true',dest='log',help='Pump screen output to a log',default=False,metavar='LOG')
optParse.add_option('-R','--RO',action='store_true',dest='readonly',help='Epics Variables are Read Only',default=False,metavar='READONLY')
optParse.set_description('The graphical tool for the sample alignment code')
optParse.print_help()
(opt,args)=optParse.parse_args()
if opt.log:
newPipe=__LoggingPipe__('Autoalign')
globals()['sys'].stdout=newPipe
globals()['sys'].stderr=newPipe
dSize=(2048,2048)
self.traceGraph = kPlot(name=u'traceGraph', parent=self, pos=wx.Point(16, 104),
size=wx.Size(456-16*2, 464), style=0,xAxis=(-dSize[0]/2,dSize[0]/2),yAxis=(-dSize[1]/2,dSize[1]/2),title='Sample Alignment')
self.histoPlot = kPlot(name=u'histoPlot', parent=self, pos=wx.Point(16, 104+16+464),
size=wx.Size(464*2+16, 200), style=0,title='Histogram')
self.cmbMaterial = dictComboBox(dict=X_ROBOT_X02DA_AALib.sampleThreshLib,
name=u'cmbMaterial', parent=self, pos=wx.Point(224, 16),
size=wx.Size(112, 27), style=0, value=u'Material...')
self.cmbMaterial.SetLabel(u'')
self.stime=time.time()
self.txtGlob.SetValue('$HOME/*/*/tif/*.tif')
# old search string '$HOME/Data10/disk2/*/tif/*.tif'
self.graphTimer=wx.Timer(self,-1)
self.timerCycle=5000
self.graphTimer.Start(self.timerCycle)
self.Bind(wx.EVT_TIMER,self.mainTimerEvent)
self.cImg=100
self.cKey=''
self.cThresh=self.threshVal.GetValue()/10.0
self.cThresh=1.0
self.OnTxtGlobTextEnter([])
self.dRange=[]
self.batchEye=-2
self.previewMode=0
self.myStage=alignStage()
self.oldImageName=''
self.oldFlatName=''
self.oldThresh=[]
self.oldMat=''
self.searchRunning=0
#self.fltSelection.SetItems(self.imgList.keys())
#self.doLoadImage()
self.flatIsLoaded=False
def __init__(self,opt=[]):
print "Class Femur Align!!"
self.cmbMaterial='Mouse Femur @ 20keV'
self.myStage=alignStage()
self.cImg=100
self.cKey=''
self.cThresh=1.0
self.dRange=[]
self.batchEye=-2
self.previewMode=0
self.myStage.SPECtoSNAP()
self.xBin=self.myStage.xBinChan.getVal()
self.yBin=self.myStage.yBinChan.getVal()
self.oldImageName=''
self.oldFlatName=''
self.oldThresh=[]
self.oldMat=''
self.searchRunning=0
self.flatLoadTime=-1
self.flatLifetime=180
self.dSize=(self.myStage.dimxChan.getVal(),self.myStage.dimyChan.getVal())
if opt.exptime>0:
nExpTime=float(opt.exptime)
self.myStage.snapExpTime.putVal(nExpTime)
print 'Exposure Time Updated: '+str(nExpTime)
self.topTol=opt.toptol/self.yBin
self.botTol=opt.bottol/self.yBin
self.centTol=opt.centtol/self.xBin
self.topIter=opt.topiter
self.botIter=opt.botiter
self.centIter=opt.centiter
self.topJump=opt.topjump/self.yBin
self.botJump=opt.botjump/self.yBin
self.thickSteps=opt.thicksteps
self.minPctBone=opt.minpctbone
self.baseImage='Snap'
self.AlignKeys={}
self.debugMode=opt.debug
self.saveMode=opt.save
self.kImageObj=kImage()
self.kImageObj.threshold(useMat=self.cmbMaterial)
self.kImageObj._impResults['minPCT']=0.005 # 1% should be enough
if opt.server>0:
self.Server()
