def stats(self, irc, msg, args, pkg):
"""<source package>
Reports various statistics (from http://packages.qa.debian.org/) about
<source package>.
"""
pkg = pkg.lower()
pts = Binding(self._ptsUri)
try:
version = pts.latest_version(pkg)
maintainer = pts.maintainer(pkg)
bugCounts = pts.bug_counts(pkg)
except ZSI.FaultException:
irc.errorInvalid("source package name")
version = "%s: %s" % (self.bold("Latest version"), version)
mname = maintainer["name"]
memail = maintainer["email"]
maintainer = format("%s: %s %u", self.bold("Maintainer"), mname, utils.web.mungeEmail(memail))
bugsAll = format("%i Total", bugCounts["all"])
bugsRC = format("%i RC", bugCounts["rc"])
bugs = format("%i Important/Normal", bugCounts["in"])
bugsMinor = format("%i Minor/Wishlist", bugCounts["mw"])
bugsFixed = format("%i Fixed/Pending", bugCounts["fp"])
bugL = (bugsAll, bugsRC, bugs, bugsMinor, bugsFixed)
s = ". ".join((version, maintainer, "%s: %s" % (self.bold("Bugs"), "; ".join(bugL))))
irc.reply(s)
def bug(self, irc, msg, args, bug):
"""<num>
Returns a description of the bug with bug id <num>.
"""
server = Binding(self._soapUri, self._soapNs)
response = server.get_status(bug)
# response = {'s-gensym3': {bug1: {'date':..., ...}, bug2: ...}}
status = response["s-gensym3"]
if status is None:
irc.error("I could not find a bug report matching that number.", Raise=True)
status = status[bug]
timeFormat = conf.supybot.reply.format.time()
searches = (
status["package"],
status["subject"],
status["originator"],
time.strftime(timeFormat, time.gmtime(status["date"])),
)
severity = status["severity"]
tags = status["tags"].split()
L = map(self.bold, ("Package", "Subject", "Reported"))
resp = format("%s: %%s; %s: %%s; %s: by %%s on %%s", *L)
resp = format(resp, *searches)
if severity:
resp += format("; %s: %s", self.bold("Severity"), severity)
if tags:
resp += format("; %s: %L", self.bold("Tags"), tags)
resp += format("; %u", self._bugUri % bug)
irc.reply(resp)
def listMembers(url):
Binding.defaultHttpsTransport = HTTPSConnection2
fp = open('soap_trace', 'w')
b = Binding(url=url, tracefile=fp)
reply = b.RPC(None,
'listMembers', [],
encodingStyle="http://schemas.xmlsoap.org/soap/encoding/",
replytype=TC.Any("listMembersResponse", nillable=True))
return reply['listMembersReturn']
def call_webservice(cookies):
global loggeduser, session
print "Trying to call webservice using SSO with obtained credentials."
url = 'https://cloud-mi-03.mib.infn.it/secure/webservice.php'
client = Binding(url=url)
for (key, value) in cookies.items():
client.cookies[key] = value
print client.oncall(loggeduser)['return']
def open_stream(self, stream):
# stream is SRU style URL to be opened as SRW
(transport, user, passwd, host, port, dirname, filename, args,
anchor) = self._parse_url(stream)
if not port:
port = 80
database = os.path.join(dirname, filename)
self.binding = Binding(host=host,
port=port,
url=database,
nsdict=self.namespaces)
return SRW.types.SearchRetrieveRequest('searchRetrieveRequest',
opts=args)
def exercise_one():
print('<----------------Exercise 1 ------------->')
url = 'http://127.0.0.1/webgoat/services/SoapRequest'
binding = Binding(url=url)
binding.SetAuth(AUTH.httpbasic, 'guest', 'guest')
try:
browser = CustomizedBrowser()
browser.add_password(url, 'guest', 'guest')
browser.open('http://127.0.0.1/webgoat/services/SoapRequest?WSDL')
soup = BeautifulSoup(browser.response().read(), 'lxml')
print("test")
print(soup)
except mechanize.HTTPError, response:
pass
class SrwDocumentStream(HttpDocumentStream):
# same as Sru, but use request object and ZSI to fetch
namespaces = {}
def __init__(self,
session,
stream,
format,
tagName=None,
codec=None,
factory=None):
self.namespaces = SRW.protocolNamespaces
HttpDocumentStream.__init__(self, session, stream, format, tagName,
codec, factory)
def open_stream(self, stream):
# stream is SRU style URL to be opened as SRW
(transport, user, passwd, host, port, dirname, filename, args,
anchor) = self._parse_url(stream)
if not port:
port = 80
database = os.path.join(dirname, filename)
self.binding = Binding(host=host,
port=port,
url=database,
nsdict=self.namespaces)
return SRW.types.SearchRetrieveRequest('searchRetrieveRequest',
opts=args)
def find_documents(self, session, cache=0):
docs = []
curr = 1
while True:
self.stream.startRecord = curr
resp = self.binding.RPC(
self.binding.url,
"searchRetrieveRequest",
self.stream,
requestclass=SRW.types.SearchRetrieveRequest,
replytype=SRW.types.SearchRetrieveResponse.typecode,
readerclass=reader)
total = resp.numberOfRecords
curr += len(resp.records)
for d in resp.records:
doc = StringDocument(d.recordData, mimeType='text/xml')
doc.recordSchema = d.recordSchema
if cache == 0:
yield doc
elif cache == 2:
docs.append(doc)
else:
raise NotImplementedError
if curr > total:
if cache == 0:
raise StopIteration
else:
break
self.documents = docs
from Bio.SwissProt import SProt
except:
sys.stderr.write(
"Can't import Bio.SwissProt.SProt. You need Biopython 1.55 to use this, or set USE_BIOPYTHON_SPROT_PARSER=False to use the Uniprot web service instead."
)
if USE_ZSI:
from ZSI.client import Binding
else:
import SOAPpy
fh = open(sys.argv[1], 'rU')
seqs = SeqIO.parse(fh, "fasta")
if USE_ZSI:
server = Binding(url='', host='localhost', port=8999)
else:
server = SOAPpy.SOAPProxy("http://localhost:8999/")
#def get_lineage_code(species, kingdoms=KINGDOMS):
# lineage = server.getLineage(species)
# for l in lineage:
# for n in l:
# #print "----------------"
# for x in n:
# if x in kingdoms:
# return kingdoms[x]
# return None
def uniprotParseSpecies(record):
#!/usr/bin/python
#
# This uses the Python ZSI SOAP Infrastructure from: http://pywebsvcs.sourceforge.net/
#
import sys;
from ZSI.client import Binding;
#soapclient = Binding(url='/phpgacl/soap/server.php', host='hubcap.netnation.com', tracefile=sys.stdout);
soapclient = Binding(url='/phpgacl/soap/server.php', host='hubcap.netnation.com');
def acl_check(aco_section_value, aco_value, aro_section_value, aro_value, axo_section_value=0, axo_value=0, root_aro_group_id=0, root_axo_group_id=0):
return soapclient.acl_check(aco_section_value, aco_value, aro_section_value, aro_value, axo_section_value, axo_value, root_aro_group_id, root_axo_group_id);
if ( acl_check('system','login','users','john_doe') ):
print "John Doe has been granted access to login!<br>\n";
else:
print "John Doe has been denied access to login!<br>\n";
import time, sys #Import the ZSI client from ZSI.client import Binding from ZSI import TC tracefile = None #Set to sys.sysout to see debugging print "Connecting to server" start = time.time() b = Binding(url='', ns='', host='localhost', port=8888, tracefile=tracefile) end = time.time() print "Time to connect to server, %f" % (end - start) print print "Sending a long string to the server" st = "This is a test string" * 1000 start = time.time() b.receiveLargeString(st) end = time.time() print "Time to send a string of %d chars, %f" % (len(st), end - start) print print "Recieving a long stirng from the server" start = time.time() res = b.sendLargeString() end = time.time() print "Time to receive a string of %d chars, %f" % (len(res), end - start) print print "Sending lots of ints to the server"
import time, sys #Import the ZSI client from ZSI.client import Binding from ZSI import TC tracefile = None #Set to sys.sysout to see debugging print "Connecting to server" start = time.time() b = Binding(url='', ns='', host='localhost', port=8888,tracefile=tracefile) end = time.time() print "Time to connect to server, %f" % (end-start) print print "Sending a long string to the server" st = "This is a test string" * 1000 start = time.time() b.receiveLargeString(st) end = time.time() print "Time to send a string of %d chars, %f" % (len(st),end-start) print print "Recieving a long stirng from the server" start = time.time() res = b.sendLargeString() end = time.time() print "Time to receive a string of %d chars, %f" % (len(res),end-start) print
def __getattr__(self, attr):
soap_callable = Binding.__getattr__(self, attr)
return SFACallable(soap_callable)
import sys #Import the ZSI client from ZSI.client import Binding u = 'http://127.0.0.1:8080' n = '' b = Binding(url=u, ns=n, host='127.0.0.1', port=8080) #result = b.getMonth(2002, 2) #print result[0] result = b.getYear(2002) print result[0]
# taxon_server.py SOAP server running to interegate the taxonomy database.
from taxon_config import *
import sys
from Bio import SeqIO
if USE_ZSI:
from ZSI.client import Binding
else:
import SOAPpy
fh = open(sys.argv[1], 'rU')
seqs = SeqIO.parse(fh, "fasta")
if USE_ZSI:
server = Binding(url='', host='localhost', port=8999)
else:
server = SOAPpy.SOAPProxy("http://localhost:8999/")
#def get_lineage_code(species, kingdoms=KINGDOMS):
# lineage = server.getLineage(species)
# for l in lineage:
# for n in l:
# #print "----------------"
# for x in n:
# if x in kingdoms:
# return kingdoms[x]
# return None
for s in seqs:
try:
#!/usr/local/bin/python
from ZSI.client import Binding
fp = open('debug.out', 'a')
b = Binding(url='http://localhost:7000/simple-test', tracefile=fp)
fp.close()
a = b.average(range(1,11))
assert a == 5
print b.hello()
import time, sys
#Import the ZSI client
from ZSI.client import Binding
from ZSI import TC
tracefile = None #Set to sys.sysout to see debugging
print "Connecting to server"
b = Binding(url='', ns='', host='localhost', port=8888,tracefile=tracefile)
print "Sending a long string to the server"
st = "T" * 1000
b.receiveLargeString(st)
print "Check File size and restart tcpdump."
raw_input("Press Any Key to go on")
print "Sending lots of ints to the server"
NUM = 100
for ctr in range(NUM):
b.receiveInt(1)
print "Done"
