def setUp(self):
# Input names
self.prefix = 'ngc5921'
self.msfile = self.prefix + '.ms'
# if testmms:
# self.msfile = self.prefix + '.mms'
self.gtable = self.prefix + '.ref1a.gcal'
self.reffile = self.prefix + '.def.fcal'
self.reffile2 = self.prefix + '.def.inc.fcal'
self.tearDown()
fpath = os.path.join(datapath,self.msfile)
if os.path.lexists(fpath):
shutil.copytree(fpath, self.msfile, symlinks=True)
fpath = os.path.join(datapath,self.gtable)
shutil.copytree(fpath, self.gtable, symlinks=True)
fpath = os.path.join(datapath,self.reffile)
shutil.copytree(fpath, self.reffile, symlinks=True)
fpath = os.path.join(datapath,self.reffile2)
shutil.copytree(fpath, self.reffile2, symlinks=True)
else:
self.fail('Data does not exist -> '+fpath)
default('fluxscale')
def setUp(self):
self.res=None
if os.path.exists(self.rawfile):
shutil.rmtree(self.rawfile)
shutil.copytree(self.datapath+self.rawfile, self.rawfile)
default(sdimprocess)
def setUp(self):
self.res=None
for name in self.rawfiles:
if (not os.path.exists(name)):
shutil.copytree(self.datapath+name, name)
default(sdimprocess)
def setUp_flags(self):
res = None
myasdmname = 'test_uid___A002_X997a62_X8c-short' # Flag.xml is modified
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/unittest/importasdm/'
os.system('ln -sf '+datapath+myasdmname)
default(importasdm)
def setUp(self):
# Input names
# ngc2403.tutorial.ms reduced in size
prefix = 'n2403.short'
self.prefix = prefix
self.msfile = prefix + '.ms'
# if testmms:
# self.msfile = prefix + '.mms'
self.gtable = prefix + '.flagFld1.gcal'
self.reffile = prefix + '.flagFld1.ref.fcal'
self.gtable2 = prefix + '.flagPartFld3.gcal'
self.reffile2 = prefix + '.flagPartFld3.ref.fcal'
fpath = os.path.join(datapath,self.msfile)
if os.path.lexists(fpath):
shutil.copytree(fpath, self.msfile, symlinks=True)
fpath = os.path.join(datapath,self.gtable)
shutil.copytree(fpath, self.gtable, symlinks=True)
fpath = os.path.join(datapath,self.reffile)
shutil.copytree(fpath, self.reffile, symlinks=True)
fpath = os.path.join(datapath,self.gtable2)
shutil.copytree(fpath, self.gtable2, symlinks=True)
fpath = os.path.join(datapath,self.reffile2)
shutil.copytree(fpath, self.reffile2, symlinks=True)
else:
self.fail('Data does not exist -> '+fpath)
default('fluxscale')
def setUp_xosro(self):
self.asdm = 'X_osro_013.55979.93803716435'
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/unittest/flagdata/'
if(not os.path.lexists(self.asdm)):
os.system('ln -s '+datapath+self.asdm +' '+self.asdm)
default(importasdm)
def setUp_autocorr(self):
self.asdm = 'AutocorrASDM'
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/unittest/importasdm/'
if(not os.path.lexists(self.asdm)):
os.system('ln -s '+datapath+self.asdm +' '+self.asdm)
default(importasdm)
def setUp_12mex(self):
res = None
myasdmname = 'uid___A002_X71e4ae_X317_short' # 12m example ASDM with mixed pol/channelisation
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/asdm-import/input/'
os.system('ln -sf '+datapath+myasdmname)
default(importasdm)
def setUp(self):
for infile in self.infiles:
if os.path.exists(infile):
shutil.rmtree(infile)
shutil.copytree(self.datapath+infile, infile)
default(sdlist)
def setUp(self):
self.res = None
default(smoothcal)
datapath = os.environ.get('CASAPATH').split()[0] + '/data/regression/unittest/smoothcal/'
shutil.copytree(datapath+self.msfile, self.msfile)
shutil.copytree(datapath+self.gcal, self.gcal)
shutil.copytree(datapath+self.ref, self.ref)
def _setUp(self, files, task):
for f in files:
if os.path.exists(f):
shutil.rmtree(f)
copytree_ignore_subversion(self.datapath, f)
default(task)
def setUp(self):
self.rval = False
#if(not os.path.exists(vis_a)):
# importuvfits(fitsfile=os.environ['CASADATA']+'/regression/ngc4826/fitsfiles/ngc4826.ll.fits5', vis=vis_a)
if(not os.path.exists(self.vis_b)):
os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/fits-import-export/input/test.ms .')
if(not os.path.exists(self.vis_c)):
os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/exportasdm/input/M100-X220-shortened.ms .')
if(not os.path.exists(self.vis_d)):
importuvfits(fitsfile=os.environ['CASAPATH'].split()[0]+'/data/regression/ngc4826/fitsfiles/ngc4826.ll.fits5',
vis=self.vis_d)
if(not os.path.exists(self.vis_e)):
os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/cvel/input/g19_d2usb_targets_line-shortened.ms .')
if(not os.path.exists(self.vis_f)):
os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/exportasdm/input/Itziar.ms .')
if(not os.path.exists(self.vis_g)):
os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/exportasdm/input/M51.ms .')
if(not os.path.exists(self.vis_h)):
os.system('ln -sf '+os.environ['CASAPATH'].split()[0]+'/data/regression/unittest/importevla/X_osro_013.55979.93803716435')
importevla('X_osro_013.55979.93803716435', vis = 'xosro2ref.ms', online=False, scans='0:2')
if(not os.path.exists(self.vis_i)):
os.system('ln -sf '+os.environ['CASAPATH'].split()[0]+'/data/regression/asdm-import/input/uid___A002_X72bc38_X000')
importasdm('uid___A002_X72bc38_X000', vis = 'asdm.ms', scans='0:2')
default(exportasdm)
def setUp(self):
self.msfile = "ngc5921_add_corect_model.ms"
self.msfile2 ="OrionS_rawACSmod_calave.ms"
self.msfile2_asap="OrionS_rawACSmod_calave.asap"
self.msfile3="OrionS_rawACSmod_calave_intent_on1_off3.ms"
self.msfile4="OrionS_rawACSmod_calave_intent_on1.ms"
self.msfile5="OrionS_rawACSmod_calave_intent_on3_off1.ms"
self.msfile6="OrionS_rawACSmod_calave_intent_off1.ms"
self.msfile7="visstat2_test6_scan.txt"
self.msfile8="visstat2_test6_amp.txt"
self.msfile9="visstat2_test5.txt"
self.msfile10="visstat2_test7.txt"
self.msfile11="visstat2_test8.txt"
self.msfile13='visstat2_test10_check_on.txt'
self.msfile14='visstat2_test10_check_off.txt'
shutil.copytree(datapath+self.msfile, self.msfile)
shutil.copytree(datapath+self.msfile2, self.msfile2)
shutil.copytree(datapath+self.msfile2_asap, self.msfile2_asap)
shutil.copytree(datapath+self.msfile3, self.msfile3)
shutil.copytree(datapath+self.msfile4, self.msfile4)
shutil.copytree(datapath+self.msfile5, self.msfile5)
shutil.copytree(datapath+self.msfile6, self.msfile6)
shutil.copyfile(datapath+self.msfile7, self.msfile7)
shutil.copyfile(datapath+self.msfile8, self.msfile8)
shutil.copyfile(datapath+self.msfile9, self.msfile9)
shutil.copyfile(datapath+self.msfile10, self.msfile10)
shutil.copyfile(datapath+self.msfile11, self.msfile11)
shutil.copyfile(datapath+self.msfile13, self.msfile13)
shutil.copyfile(datapath+self.msfile14, self.msfile14)
default('visstat2')
def setUp(self):
self.rval = False
if(not os.path.exists(self.vis_f)):
rval = os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/unittest/wvrgcal/input/multisource_unittest.ms .')
if rval!=0:
raise Exception, "Error copying input data"
if(not os.path.exists(self.vis_g)):
rval = os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/unittest/wvrgcal/input/wvrgcal4quasar_10s.ms .')
if rval!=0:
raise Exception, "Error copying input data"
if(not os.path.exists(self.vis_h)):
rval = os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/unittest/wvrgcal/input/uid___A002_X8ca70c_X5_shortened.ms .')
if rval!=0:
raise Exception, "Error copying input data"
for i in range(0,len(self.ref)):
if(not os.path.exists(self.ref[i])):
rval = os.system('cp -R '+os.environ['CASAPATH'].split()[0]+'/data/regression/unittest/wvrgcal/input/'+self.ref[i]+' .')
if rval!=0:
raise Exception, "Error copying input data"
if self.makeref:
print "Will create copies of generated caltables in directory \"newref\""
os.system('mkdir -p newref')
default(wvrgcal)
def setUp(self):
for infile in self.infiles:
if os.path.exists(infile):
shutil.rmtree(infile)
shutil.copytree(self.datapath + infile, infile)
default(sdlistold)
def setUp(self):
self.__copy_from_datapath(self.infile)
if hasattr(self, 'reffile'):
self.__copy_from_datapath(self.reffile)
default(sdgaincal)
def _setUp(self, files, task):
for f in files:
if os.path.exists(f):
shutil.rmtree(f)
copytree_ignore_subversion(self.datapath, f)
default(task)
def setUp_eph(self):
res = None
myasdmname = 'uid___A002_X997a62_X8c-short' # 12m example ASDM with ephemerides
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/asdm-import/input/'
os.system('ln -sf '+datapath+myasdmname)
default(importasdm)
def setUp(self):
res = None
shutil.rmtree(outms, ignore_errors=True)
shutil.copytree(datapath + inpms, outms)
shutil.rmtree(outms2, ignore_errors=True)
os.system('cp -R '+datapath+inpms2 + ' ' + outms2)
#shutil.copytree(datapath + inpms2, outms2)
default(fixplanets)
def setUp(self):
default(initweights)
for name in self.templist:
# remove old ones (if exists)
if (os.path.exists(name)):
shutil.rmtree(name)
# copy a new ones
shutil.copytree(self.datapath+name, name)
def setUp(self):
# MS in repository was flagged with the following command:
# flagdata(vis=self.msfile, antenna='17', flagbackup=False)
self.msfile = "ngc5921.ms"
if(not os.path.exists(self.msfile)):
shutil.copytree(datapath+self.msfile, self.msfile)
default('visstat')
def setUp(self):
self.res = None
default(clean)
if (os.path.exists(self.msfile)):
os.system('rm -rf ' + self.msfile)
datapath = os.environ.get('CASAPATH').split()[0] + '/data/regression/unittest/clean/'
shutil.copytree(datapath+self.msfile, self.msfile)
def setUp_CAS_6941(self):
self.vis = 'CAS-6941.ms'
if os.path.exists(self.vis):
self.cleanup()
os.system('cp -RL '+datapath + self.vis +' '+ self.vis)
default(mstransform)
def setUp_autocorr(self):
self.asdm = 'AutocorrASDM'
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/unittest/importasdm/'
if (not os.path.lexists(self.asdm)):
os.system('ln -s ' + datapath + self.asdm + ' ' + self.asdm)
default(importasdm)
def setUp(self):
if os.path.exists(self.infile):
shutil.rmtree(self.infile)
shutil.copytree(self.datapath+self.infile, self.infile)
if os.path.exists(self.vdir):
shutil.rmtree(self.vdir)
default(sdflagmanagerold)
def setUp_flags(self):
res = None
myasdmname = 'test_uid___A002_X997a62_X8c-short' # Flag.xml is modified
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/unittest/importasdm/'
os.system('ln -sf ' + datapath + myasdmname)
default(importasdm)
def setUp_eph(self):
res = None
myasdmname = 'uid___A002_X997a62_X8c-short' # 12m example ASDM with ephemerides
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/asdm-import/input/'
os.system('ln -sf ' + datapath + myasdmname)
default(importasdm)
def setUp_12mex(self):
res = None
myasdmname = 'uid___A002_X71e4ae_X317_short' # 12m example ASDM with mixed pol/channelisation
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/asdm-import/input/'
os.system('ln -sf ' + datapath + myasdmname)
default(importasdm)
def setUp(self):
self.res=None
if (not os.path.exists(self.infile)):
shutil.copytree(self.datapath+self.infile, self.infile)
if (not os.path.exists(self.refimage)):
shutil.copytree(self.datapath+self.refimage, self.refimage)
default(sdtpimaging)
def setUp_xosro(self):
self.asdm = 'X_osro_013.55979.93803716435'
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/unittest/flagdata/'
if (not os.path.lexists(self.asdm)):
os.system('ln -s ' + datapath + self.asdm + ' ' + self.asdm)
default(importasdm)
def setUp_SD(self):
res = None
# Single-dish ASDM, 1 scan, 9 spws, 4 antennas, 10 baselines, 4 auto-corrs + cross
myasdmname = 'uid___A002_X6218fb_X264'
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/alma-sd/M100/'
os.system('ln -sf '+datapath+myasdmname)
default(importasdm)
def setUp(self):
self.res = None
default(smoothcal)
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/unittest/smoothcal/'
shutil.copytree(datapath + self.msfile, self.msfile)
shutil.copytree(datapath + self.gcal, self.gcal)
shutil.copytree(datapath + self.ref, self.ref)
def setUp_g19(self):
# data with spw=0~23 128 channel each in LSRK, field=0,1
self.vis = 'g19_d2usb_targets_line-shortened-thinned.ms'
if os.path.exists(self.vis):
self.cleanup()
os.system('cp -RL '+datapath + self.vis +' '+ self.vis)
default(mstransform)
def setUp(self):
if hasattr(self, "inputs"):
for infile in self.inputs:
# print 'copying %s...'%(infile)
if os.path.exists(infile):
shutil.rmtree(infile)
shutil.copytree(os.path.join(self.datapath, infile), infile)
default(sdfit)
def setUp_jupiter(self):
# data col, spw=0,1 1 channel each, TOPO, field=0~12, 93 scans
self.vis = 'jupiter6cm.demo-thinned.ms'
if os.path.exists(self.vis):
self.cleanup()
os.system('cp -RL '+datapath + self.vis +' '+ self.vis)
default(mstransform)
def setUp_CAS_5013(self):
self.vis = 'ALMA-data-mst-science-testing-CAS-5013-one-baseline-one-timestamp.ms'
if os.path.exists(self.vis):
self.cleanup()
os.system('cp -RL '+datapath + self.vis +' '+ self.vis)
default(mstransform)
def setUp_SD(self):
res = None
# Single-dish ASDM, 1 scan, 9 spws, 4 antennas, 10 baselines, 4 auto-corrs + cross
myasdmname = 'uid___A002_X6218fb_X264'
datapath = os.environ.get(
'CASAPATH').split()[0] + '/data/regression/alma-sd/M100/'
os.system('ln -sf ' + datapath + myasdmname)
default(importasdm)
def setUp_SD(self):
res = None
# Single-dish ASDM with 3 antennas and 6 baselines in total
self.vis = 'uid___A002_X85c183_X36f_small.ms'
datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/unittest/partition/'
if not os.path.exists(self.vis):
os.system('ln -sf ' + datapath + self.vis +' '+ self.vis)
default(partition)
def setUp(self):
res = None
if not os.path.exists(inpms):
shutil.copytree(datapath + inpms, inpms)
if not os.path.exists(inpms2):
shutil.copytree(datapath2 + inpms2, inpms2)
default(fixvis)
shutil.rmtree(outms, ignore_errors=True)
shutil.rmtree(outms2, ignore_errors=True)
def setUp(self):
self.res = None
if (os.path.exists(self.fits)):
os.system('rm -rf '+ self.fits)
datapath = os.environ.get('CASAPATH').split()[0] + '/data/regression/ngc5921/'
shutil.copyfile(datapath+self.fits, self.fits)
importuvfits(fitsfile=self.fits, vis=self.msfile)
default(csvclean)
