Example #1
0
def main(args):
    # distributed setup
    print("initializing...")
    dask_mpi.initialize(nthreads=args.cpus_per_node)
    client = Client()
    print(client)

    # get data
    print("connecting to data...")
    print(client)
    container_name = "malware"
    storage_options = {"account_name": "azuremlexamples"}
    fs = AzureBlobFileSystem(**storage_options)
    files = fs.ls(f"{container_name}/processed")

    # read into dataframes
    print("creating dataframes...")
    print(client)
    for f in files:
        if "train" in f:
            df_train = dd.read_parquet(f"az://{f}", storage_options=storage_options)
        elif "test" in f:
            df_test = dd.read_parquet(f"az://{f}", storage_options=storage_options)

    # data processing
    print("processing data...")
    print(client)
    cols = [col for col in df_train.columns if df_train.dtypes[col] != "object"]
    X = df_train[cols].drop("HasDetections", axis=1).values.persist()
    y = df_train["HasDetections"].persist()

    # train xgboost
    print("training xgboost...")
    print(client)

    params = {
        "objective": "binary:logistic",
        "learning_rate": args.learning_rate,
        "gamma": args.gamma,
        "max_depth": args.max_depth,
    }
    mlflow.log_params(params)  # log to the run

    dtrain = xgb.dask.DaskDMatrix(client, X, y)
    model = xgb.dask.train(client, params, dtrain, num_boost_round=args.num_boost_round)
    print(model)

    # predict on test data
    print("making predictions...")
    print(client)
    X_test = df_test[
        [col for col in cols if "HasDetections" not in col]
    ].values.persist()
    y_pred = xgb.dask.predict(client, model, X_test)
    y_pred.to_dask_dataframe().to_csv("./outputs/predictions.csv")

    # save model
    print("saving model...")
    print(client)
    mlflow.xgboost.log_model(model["booster"], "./outputs/model")
Example #2
0
def test_open_file(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    f = fs.open("/data/root/a/file.txt")

    result = f.read()
    assert result == b"0123456789"
Example #3
0
def test_fetch_second_half(storage):
    # Verify if length extends beyond the end of file, truncate the read
    fs = AzureBlobFileSystem(
        account_name=storage.account_name, connection_string=CONN_STR,
    )
    blob = fs.open("data/top_file.txt")
    assert len(blob._fetch_range(start=5, end=10)) == 5
Example #4
0
def test_isdir(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    BUCKET = "/name/of/the/bucket"
    BASE_PATH = BUCKET + "/" + "012345"
    # EMPTY_DIR = BASE_PATH + "/empty_dir"

    fs.makedirs(BASE_PATH)
    assert fs.isdir(BASE_PATH) is True
Example #5
0
def test_open_context_manager(storage, mocker):
    "test closing azure client with context manager"
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    with fs.open("/data/root/a/file.txt") as f:
        close = mocker.patch.object(f.container_client, "close")
        result = f.read()
        assert result == b"0123456789"

    close.assert_called_once()
Example #6
0
def test_open_file(storage, mocker):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    f = fs.open("/data/root/a/file.txt")

    result = f.read()
    assert result == b"0123456789"

    close = mocker.patch.object(f.container_client, "close")
    f.close()

    close.assert_called_once()
Example #7
0
def test_exists(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    assert fs.exists("data/top_file.txt")
    assert fs.exists("data")
    assert fs.exists("data/")
    assert not fs.exists("non-existent-container")
    assert not fs.exists("non-existent-container/")
    assert fs.exists("")
    assert not fs.exists("data/not-a-key")
Example #8
0
def test_cat(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    fs.mkdir("catdir")
    data = b"0123456789"
    with fs.open("catdir/catfile.txt", "wb") as f:
        f.write(data)
    assert fs.cat("catdir/catfile.txt") == data
    fs.rm("catdir/catfile.txt")
Example #9
0
File: azure.py Project: syyunn/dvc
    def fs(self):
        from adlfs import AzureBlobFileSystem
        from azure.core.exceptions import AzureError

        try:
            file_system = AzureBlobFileSystem(**self.login_info)
            if self.bucket not in [
                    container.rstrip("/") for container in file_system.ls("/")
            ]:
                file_system.mkdir(self.bucket)
        except (ValueError, AzureError) as e:
            raise AzureAuthError(
                f"Authentication to Azure Blob Storage via {self.login_method}"
                " failed.\nLearn more about configuration settings at"
                f" {format_link('https://man.dvc.org/remote/modify')}") from e

        return file_system
Example #10
0
    def setup(self, stage=None):
        data_dir = "datasets/mnist"
        storage_options = {"account_name": "azuremlexamples"}
        fs = AzureBlobFileSystem(**storage_options)
        files = fs.ls(data_dir)

        train_len = 60000
        test_len = 10000

        for f in files:
            if "train-images" in f:
                self.X_train = self._read_images(gzip.open(fs.open(f)), train_len)
            elif "train-labels" in f:
                self.y_train = self._read_labels(gzip.open(fs.open(f)), train_len)
            elif "images" in f:
                self.X_test = self._read_images(gzip.open(fs.open(f)), test_len)
            elif "labels" in f:
                self.y_test = self._read_labels(gzip.open(fs.open(f)), test_len)

        self.ohe = OneHotEncoder().fit(self.y_train.reshape(-1, 1))

        self.mnist_train = list(
            zip(
                self.X_train, self.ohe.transform(self.y_train.reshape(-1, 1)).toarray(),
            )
        )
        self.mnist_test = list(
            zip(self.X_test, self.ohe.transform(self.y_test.reshape(-1, 1)).toarray(),)
        )
Example #11
0
def test_rm_recursive(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    assert "data/root/c/" in fs.ls("/data/root")

    assert fs.ls("data/root/c") == [
        "data/root/c/file1.txt",
        "data/root/c/file2.txt",
    ]
    fs.rm("data/root/c", recursive=True)
    assert "data/root/c/" not in fs.ls("/data/root")

    with pytest.raises(FileNotFoundError):
        fs.ls("data/root/c")
Example #12
0
def test_append_operation(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    fs.mkdir("append-container")

    # Check that appending to an existing file works as expected
    with fs.open("append-container/append_file.txt", "ab") as f:
        f.write(b"0123456789")
    with fs.open("append-container/append_file.txt", "ab") as f:
        f.write(b"0123456789")
    with fs.open("new-container/dir/file2.txt", "rb") as f:
        outfile = f.read()
    assert outfile == b"01234567890123456789"

    fs.rm("append-container", recursive=True)
Example #13
0
    def __init__(
        self,
        path: str = None,
        gen: int = 2,
        credentials: Dict[str, Any] = None,
        *args,
        **kwargs,
    ):

        credentials = credentials or local_config.get("AZURE_ADLS")

        super().__init__(*args, credentials=credentials, **kwargs)

        storage_account_name = self.credentials["ACCOUNT_NAME"]
        tenant_id = self.credentials["AZURE_TENANT_ID"]
        client_id = self.credentials["AZURE_CLIENT_ID"]
        client_secret = self.credentials["AZURE_CLIENT_SECRET"]

        self.path = path
        self.gen = gen
        self.storage_options = {
            "tenant_id": tenant_id,
            "client_id": client_id,
            "client_secret": client_secret,
        }
        if gen == 1:
            self.fs = AzureDatalakeFileSystem(
                store_name=storage_account_name,
                tenant_id=tenant_id,
                client_id=client_id,
                client_secret=client_secret,
            )
            self.base_url = f"adl://{storage_account_name}"
        elif gen == 2:
            self.storage_options["account_name"] = storage_account_name
            self.fs = AzureBlobFileSystem(
                account_name=storage_account_name,
                tenant_id=tenant_id,
                client_id=client_id,
                client_secret=client_secret,
            )
            self.base_url = f"az://"
Example #14
0
File: azure.py Project: jhhuh/dvc
    def fs(self):
        from adlfs import AzureBlobFileSystem
        from azure.core.exceptions import AzureError

        try:
            return AzureBlobFileSystem(**self.fs_args)
        except (ValueError, AzureError) as e:
            raise AzureAuthError(
                f"Authentication to Azure Blob Storage via {self.login_method}"
                " failed.\nLearn more about configuration settings at"
                f" {format_link('https://man.dvc.org/remote/modify')}") from e
Example #15
0
def test_rm(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    fs.rm("/data/root/a/file.txt")

    with pytest.raises(FileNotFoundError):
        fs.ls("/data/root/a/file.txt", refresh=True)
Example #16
0
def test_url(storage):
    fs = AzureBlobFileSystem(
        account_name=storage.account_name, connection_string=CONN_STR, account_key=KEY
    )
    fs.mkdir("catdir")
    data = b"0123456789"
    with fs.open("catdir/catfile.txt", "wb") as f:
        f.write(data)

    import requests

    r = requests.get(fs.url("catdir/catfile.txt"))
    assert r.status_code == 200
    assert r.content == data

    fs.rm("catdir/catfile.txt")
Example #17
0
def test_dask_parquet(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    fs.mkdir("test")
    STORAGE_OPTIONS = {
        "account_name": "devstoreaccount1",
        "connection_string": CONN_STR,
    }
    df = pd.DataFrame({
        "col1": [1, 2, 3, 4],
        "col2": [2, 4, 6, 8],
        "index_key": [1, 1, 2, 2],
        "partition_key": [1, 1, 2, 2],
    })

    dask_dataframe = dd.from_pandas(df, npartitions=1)
    for protocol in ["abfs", "az"]:
        dask_dataframe.to_parquet(
            "{}://[email protected]/test_group.parquet".format(
                protocol),
            storage_options=STORAGE_OPTIONS,
            engine="pyarrow",
        )

        fs = AzureBlobFileSystem(**STORAGE_OPTIONS)
        assert fs.ls("test/test_group.parquet") == [
            "test/test_group.parquet/_common_metadata",
            "test/test_group.parquet/_metadata",
            "test/test_group.parquet/part.0.parquet",
        ]
        fs.rm("test/test_group.parquet")

    df_test = dd.read_parquet(
        "abfs://test/test_group.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    ).compute()
    assert_frame_equal(df, df_test)
Example #18
0
def configure_targets(bakery: Bakery, recipe_bakery: RecipeBakery,
                      recipe_name: str, secrets: Dict, extension: str):
    target = bakery.targets[recipe_bakery.target]
    repository = os.environ["GITHUB_REPOSITORY"]
    if target.private.protocol == S3_PROTOCOL:
        if target.private.storage_options:
            key = secrets[target.private.storage_options.key]
            secret = secrets[target.private.storage_options.secret]
            fs = S3FileSystem(
                anon=False,
                default_cache_type="none",
                default_fill_cache=False,
                key=key,
                secret=secret,
            )
            target_path = f"s3://{recipe_bakery.target}/{repository}/{recipe_name}.{extension}"
            target = FSSpecTarget(fs, target_path)
            cache_path = f"s3://{recipe_bakery.target}/{repository}/{recipe_name}/cache"
            cache_target = CacheFSSpecTarget(fs, cache_path)
            metadata_path = f"s3://{recipe_bakery.target}/{repository}/{recipe_name}/cache/metadata"
            metadata_target = MetadataTarget(fs, metadata_path)
            return Targets(target=target,
                           cache=cache_target,
                           metadata=metadata_target)
    elif target.private.protocol == ABFS_PROTOCOL:
        if target.private.storage_options:
            secret = secrets[target.private.storage_options.secret]
            fs = AzureBlobFileSystem(connection_string=secret)
            target_path = f"abfs://{recipe_bakery.target}/{repository}/{recipe_name}.{extension}"
            target = FSSpecTarget(fs, target_path)
            cache_path = f"abfs://{recipe_bakery.target}/{repository}/{recipe_name}/cache"
            cache_target = CacheFSSpecTarget(fs, cache_path)
            metadata_path = (
                f"abfs://{recipe_bakery.target}/{repository}/{recipe_name}"
                "/cache/metadata")
            metadata_target = MetadataTarget(fs, metadata_path)
            return Targets(target=target,
                           cache=cache_target,
                           metadata=metadata_target)
    else:
        raise UnsupportedTarget
Example #19
0
def test_info(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    container_info = fs.info("data")
    assert container_info == {"name": "data/", "type": "directory", "size": 0}

    container2_info = fs.info("data/root")
    assert container2_info == {
        "name": "data/root/",
        "type": "directory",
        "size": 0
    }

    dir_info = fs.info("data/root/c")
    assert dir_info == {"name": "data/root/c/", "type": "directory", "size": 0}

    file_info = fs.info("data/root/a/file.txt")
    assert file_info == {
        "name": "data/root/a/file.txt",
        "type": "file",
        "size": 10
    }
Example #20
0
def test_deep_paths(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    fs.mkdir("test_deep")
    assert "test_deep/" in fs.ls("")

    with fs.open("test_deep/a/b/c/file.txt", "wb") as f:
        f.write(b"0123456789")

    assert fs.ls("test_deep") == ["test_deep/a/"]
    assert fs.ls("test_deep/") == ["test_deep/a/"]
    assert fs.ls("test_deep/a") == ["test_deep/a/b/"]
    assert fs.ls("test_deep/a/") == ["test_deep/a/b/"]
    assert fs.find("test_deep") == ["test_deep/a/b/c/file.txt"]
    assert fs.find("test_deep/") == ["test_deep/a/b/c/file.txt"]
    assert fs.find("test_deep/a") == ["test_deep/a/b/c/file.txt"]
    assert fs.find("test_deep/a/") == ["test_deep/a/b/c/file.txt"]

    fs.rm("test_deep", recursive=True)

    assert "test_deep/" not in fs.ls("")
    assert fs.find("test_deep") == []
Example #21
0
def test_fetch_first_half(storage):
    fs = AzureBlobFileSystem(
        account_name=storage.account_name, connection_string=CONN_STR,
    )
    blob = fs.open("data/top_file.txt")
    assert len(blob._fetch_range(start=0, end=5)) == 5
Example #22
0
def test_fetch_length_is_none(storage):
    fs = AzureBlobFileSystem(
        account_name=storage.account_name, connection_string=CONN_STR,
    )
    blob = fs.open("data/top_file.txt")
    assert len(blob._fetch_range(start=2, end=None)) == 8
Example #23
0
def test_cp_file(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    fs.mkdir("homedir")
    fs.mkdir("homedir/enddir")
    fs.touch("homedir/startdir/test_file.txt")
    fs.cp_file("homedir/startdir/test_file.txt",
               "homedir/enddir/test_file.txt")
    files = fs.ls("homedir/enddir")
    assert "homedir/enddir/test_file.txt" in files

    fs.rm("homedir", recursive=True)
Example #24
0
def test_put_file(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    lfs = LocalFileSystem()

    fs.mkdir("putdir")

    # Check that put on an empty file works
    with open("sample.txt", "wb") as f:
        f.write(b"")
    fs.put("sample.txt", "putdir/sample.txt")
    fs.get("putdir/sample.txt", "sample2.txt")

    with open("sample.txt", "rb") as f:
        f1 = f.read()
    with open("sample2.txt", "rb") as f:
        f2 = f.read()
    assert f1 == f2

    lfs.rm("sample.txt")
    lfs.rm("sample2.txt")

    # Check that put on a file with data works
    with open("sample3.txt", "wb") as f:
        f.write(b"01234567890")
    fs.put("sample3.txt", "putdir/sample3.txt")
    fs.get("putdir/sample3.txt", "sample4.txt")
    with open("sample3.txt", "rb") as f:
        f3 = f.read()
    with open("sample4.txt", "rb") as f:
        f4 = f.read()
    assert f3 == f4
    fs.rm("putdir", recursive=True)
Example #25
0
def test_dask_parquet(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)
    fs.mkdir("test")
    STORAGE_OPTIONS = {
        "account_name": "devstoreaccount1",
        "connection_string": CONN_STR,
    }
    df = pd.DataFrame({
        "col1": [1, 2, 3, 4],
        "col2": [2, 4, 6, 8],
        "index_key": [1, 1, 2, 2],
        "partition_key": [1, 1, 2, 2],
    })

    dask_dataframe = dd.from_pandas(df, npartitions=1)
    for protocol in ["abfs", "az"]:
        dask_dataframe.to_parquet(
            "{}://test/test_group.parquet".format(protocol),
            storage_options=STORAGE_OPTIONS,
            engine="pyarrow",
        )

        fs = AzureBlobFileSystem(**STORAGE_OPTIONS)
        assert fs.ls("test/test_group.parquet") == [
            "test/test_group.parquet/_common_metadata",
            "test/test_group.parquet/_metadata",
            "test/test_group.parquet/part.0.parquet",
        ]
        fs.rm("test/test_group.parquet")

    df_test = dd.read_parquet(
        "abfs://test/test_group.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    ).compute()
    assert_frame_equal(df, df_test)

    A = np.random.randint(0, 100, size=(10000, 4))
    df2 = pd.DataFrame(data=A, columns=list("ABCD"))
    ddf2 = dd.from_pandas(df2, npartitions=4)
    dd.to_parquet(
        ddf2,
        "abfs://test/test_group2.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    )
    assert fs.ls("test/test_group2.parquet") == [
        "test/test_group2.parquet/_common_metadata",
        "test/test_group2.parquet/_metadata",
        "test/test_group2.parquet/part.0.parquet",
        "test/test_group2.parquet/part.1.parquet",
        "test/test_group2.parquet/part.2.parquet",
        "test/test_group2.parquet/part.3.parquet",
    ]
    df2_test = dd.read_parquet(
        "abfs://test/test_group2.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    ).compute()
    assert_frame_equal(df2, df2_test)

    a = np.full(shape=(10000, 1), fill_value=1)
    b = np.full(shape=(10000, 1), fill_value=2)
    c = np.full(shape=(10000, 1), fill_value=3)
    d = np.full(shape=(10000, 1), fill_value=4)
    B = np.concatenate((a, b, c, d), axis=1)
    df3 = pd.DataFrame(data=B, columns=list("ABCD"))
    ddf3 = dd.from_pandas(df3, npartitions=4)
    dd.to_parquet(
        ddf3,
        "abfs://test/test_group3.parquet",
        partition_on=["A", "B"],
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    )
    assert fs.glob("test/test_group3.parquet/*") == [
        "test/test_group3.parquet/A=1",
        "test/test_group3.parquet/_common_metadata",
        "test/test_group3.parquet/_metadata",
    ]
    df3_test = dd.read_parquet(
        "abfs://test/test_group3.parquet",
        filters=[("A", "=", 1)],
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    ).compute()
    df3_test = df3_test[["A", "B", "C", "D"]]
    df3_test = df3_test[["A", "B", "C", "D"]].astype(int)
    assert_frame_equal(df3, df3_test)

    A = np.random.randint(0, 100, size=(10000, 4))
    df4 = pd.DataFrame(data=A, columns=list("ABCD"))
    ddf4 = dd.from_pandas(df4, npartitions=4)
    dd.to_parquet(
        ddf4,
        "abfs://test/test_group4.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
        flavor="spark",
        write_statistics=False,
    )
    fs.rmdir("test/test_group4.parquet/_common_metadata", recursive=True)
    fs.rmdir("test/test_group4.parquet/_metadata", recursive=True)
    fs.rm("test/test_group4.parquet/_common_metadata")
    fs.rm("test/test_group4.parquet/_metadata")
    assert fs.ls("test/test_group4.parquet") == [
        "test/test_group4.parquet/part.0.parquet",
        "test/test_group4.parquet/part.1.parquet",
        "test/test_group4.parquet/part.2.parquet",
        "test/test_group4.parquet/part.3.parquet",
    ]
    df4_test = dd.read_parquet(
        "abfs://test/test_group4.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    ).compute()
    assert_frame_equal(df4, df4_test)

    A = np.random.randint(0, 100, size=(10000, 4))
    df5 = pd.DataFrame(data=A, columns=list("ABCD"))
    ddf5 = dd.from_pandas(df5, npartitions=4)
    dd.to_parquet(
        ddf5,
        "abfs://test/test group5.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    )
    assert fs.ls("test/test group5.parquet") == [
        "test/test group5.parquet/_common_metadata",
        "test/test group5.parquet/_metadata",
        "test/test group5.parquet/part.0.parquet",
        "test/test group5.parquet/part.1.parquet",
        "test/test group5.parquet/part.2.parquet",
        "test/test group5.parquet/part.3.parquet",
    ]
    df5_test = dd.read_parquet(
        "abfs://test/test group5.parquet",
        storage_options=STORAGE_OPTIONS,
        engine="pyarrow",
    ).compute()
    assert_frame_equal(df5, df5_test)
Example #26
0
def test_large_blob(storage):
    import tempfile
    import hashlib
    import io
    import shutil
    from pathlib import Path

    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    # create a 20MB byte array, ensure it's larger than blocksizes to force a
    # chuncked upload
    blob_size = 120_000_000
    # blob_size = 2_684_354_560
    assert blob_size > fs.blocksize
    assert blob_size > AzureBlobFile.DEFAULT_BLOCK_SIZE

    data = b"1" * blob_size
    _hash = hashlib.md5(data)
    expected = _hash.hexdigest()

    # create container
    fs.mkdir("chunk-container")

    # upload the data using fs.open
    path = "chunk-container/large-blob.bin"
    with fs.open(path, "ab") as dst:
        dst.write(data)

    assert fs.exists(path)
    assert fs.size(path) == blob_size

    del data

    # download with fs.open
    bio = io.BytesIO()
    with fs.open(path, "rb") as src:
        shutil.copyfileobj(src, bio)

    # read back the data and calculate md5
    bio.seek(0)
    data = bio.read()
    _hash = hashlib.md5(data)
    result = _hash.hexdigest()

    assert expected == result

    # do the same but using upload/download and a tempdir
    path = path = "chunk-container/large_blob2.bin"
    with tempfile.TemporaryDirectory() as td:
        local_blob: Path = Path(td) / "large_blob2.bin"
        with local_blob.open("wb") as fo:
            fo.write(data)
        assert local_blob.exists()
        assert local_blob.stat().st_size == blob_size

        fs.upload(str(local_blob), path)
        assert fs.exists(path)
        assert fs.size(path) == blob_size

        # download now
        local_blob.unlink()
        fs.download(path, str(local_blob))
        assert local_blob.exists()
        assert local_blob.stat().st_size == blob_size
Example #27
0
def test_ls(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    ## these are containers
    assert fs.ls("") == ["data/"]
    assert fs.ls("/") == ["data/"]
    assert fs.ls(".") == ["data/"]

    ## these are top-level directories and files
    assert fs.ls("data") == ["data/root/", "data/top_file.txt"]
    assert fs.ls("/data") == ["data/root/", "data/top_file.txt"]

    # root contains files and directories
    assert fs.ls("data/root") == [
        "data/root/a/",
        "data/root/b/",
        "data/root/c/",
        "data/root/rfile.txt",
    ]
    assert fs.ls("data/root/") == [
        "data/root/a/",
        "data/root/b/",
        "data/root/c/",
        "data/root/rfile.txt",
    ]

    ## slashes are not not needed, but accepted
    assert fs.ls("data/root/a") == ["data/root/a/file.txt"]
    assert fs.ls("data/root/a/") == ["data/root/a/file.txt"]
    assert fs.ls("/data/root/a") == ["data/root/a/file.txt"]
    assert fs.ls("/data/root/a/") == ["data/root/a/file.txt"]

    ## file details
    assert fs.ls("data/root/a/file.txt", detail=True) == [{
        "name": "data/root/a/file.txt",
        "size": 10,
        "type": "file"
    }]

    # c has two files
    assert fs.ls("data/root/c", detail=True) == [
        {
            "name": "data/root/c/file1.txt",
            "size": 10,
            "type": "file"
        },
        {
            "name": "data/root/c/file2.txt",
            "size": 10,
            "type": "file"
        },
    ]

    ## if not direct match is found throws error
    with pytest.raises(FileNotFoundError):
        fs.ls("not-a-container")

    with pytest.raises(FileNotFoundError):
        fs.ls("data/not-a-directory/")

    with pytest.raises(FileNotFoundError):
        fs.ls("data/root/not-a-file.txt")
Example #28
0
def test_mkdir_rm_recursive(storage):
    fs = AzureBlobFileSystem(account_name=storage.account_name,
                             connection_string=CONN_STR)

    fs.mkdir("test_mkdir_rm_recursive")
    assert "test_mkdir_rm_recursive/" in fs.ls("")

    with fs.open("test_mkdir_rm_recursive/file.txt", "wb") as f:
        f.write(b"0123456789")

    with fs.open("test_mkdir_rm_recursive/dir/file.txt", "wb") as f:
        f.write(b"ABCD")

    with fs.open("test_mkdir_rm_recursive/dir/file2.txt", "wb") as f:
        f.write(b"abcdef")

    assert fs.find("test_mkdir_rm_recursive") == [
        "test_mkdir_rm_recursive/dir/file.txt",
        "test_mkdir_rm_recursive/dir/file2.txt",
        "test_mkdir_rm_recursive/file.txt",
    ]

    fs.rm("test_mkdir_rm_recursive", recursive=True)

    assert "test_mkdir_rm_recursive/" not in fs.ls("")
    assert fs.find("test_mkdir_rm_recursive") == []
Example #29
0
def test_fetch_entire_blob(storage):
    fs = AzureBlobFileSystem(
        account_name=storage.account_name, connection_string=CONN_STR,
    )
    blob = fs.open("data/top_file.txt")
    assert len(blob._fetch_range(start=0, length=10)) == 10
Example #30
0
def test_connect(storage):
    AzureBlobFileSystem(account_name=storage.account_name,
                        connection_string=CONN_STR)