["CA_N27_MPM", "area_6", "area_4a", "area_4p"])
oplist.append(op)
op = afni_base.comopt('-areas_2', -2, \
["CA_ZOUZOU", "areea_6", "areea_4a", "areea_4p"])
oplist.append(op)
op = afni_base.comopt('-dsets', -1, [])
oplist.append(op)
op = afni_base.comopt('-sides', -1, ['left', 'right'])
oplist.append(op)
op = afni_base.comopt('-command', -1, [])
oplist.append(op)
opts = afni_base.getopts2(sys.argv, oplist)
if opts == None:
sys.exit()
afni_base.show_opts2(opts)
#find keys with -areas_
areas = []
for key in opts.keys():
if key.find('-areas') > -1: #here's one set of areas
areas.append(key)
#Now do the deed
for ak in areas:
op = opts[ak] #Get the areas_* option
atlas = op.parlist[0]
alist = op.parlist[1:] #the areas
for side in opts['-sides'].parlist:
for ar in alist:
com = "rm -f %s_%s* >& /dev/null" % (ar, side)
def getopts2(argv,oplist):
""" A function to parse command line arguments.
to use it, you need to set up the options list.
So, from a main you can do the following:
oplist = []
# an option that needs no params
oplist.append(afni_base.comopt('-dicom', 0, []))
# an option that needs 2 params, with 2 options, defaulting to 2 and 10.0
oplist.append(afni_base.comopt('-clust', 2, ['2', '10.0']))
# an option that needs an undetermined number of parameters
# (-1 for 1 or more, -2 for 2 or more)
oplist.append(afni_base.comopt('-dsets', -1, []))
once the list is made, you call getopts2 with argv and oplist
opts = afni_base.getopts2(sys.argv, oplist)
opts is a dictionary with the name of oplist elements as keys
to get a quick look at it use:
afni_base.show_opts2(opts) """
opts = {}
if len(argv) == 0:
return opts
#Add the program name
op = comopt('basename',0, [])
opts['basename'] = op
argv.remove( argv[0] )
#form a list of the known options
optnames = []
for op in oplist:
optnames.append(op.name)
#find those options in oplist
for op in oplist:
if op.name in argv:
op.n_found = 0 #found that argument
op.iname = argv.index(op.name) #copy index into list
argv.remove(op.name) #remove this option from list
op.parlist = []
if op.n_exp < 0 or op.n_exp > 0: #parameters expected, get them
while ((op.n_exp < 0 and op.iname < len(argv)) or \
(op.n_exp > 0 and len(op.parlist) < op.n_exp and len(argv) > 0))\
and argv[op.iname] not in optnames:
if len(op.acceptlist):
if argv[op.iname] not in op.acceptlist:
print "Error: parameter value %s for %s is not " \
"acceptable\nChoose from %s" % \
(argv[op.iname], op.name, \
string.join(op.acceptlist, ' , '))
op.parlist.append(argv[op.iname]) #string added
argv.remove(argv[op.iname]) #remove this string from list
op.n_found = len(op.parlist)
else : #No option in argv, just copy option
op.parlist = op.deflist
#Now copy results to dictionary
opts[op.name] = op #a bit of redundancy, but I don't care
if (op.test() == None):
afni_base.show_opts2(opts)
return None
#Any remaining?
for op in oplist:
if op.name == 'loose': #Expecting loose params
if op.n_exp < 0 or op.n_exp > 0: #parameters expected, get them
op.parlist.extend(argv) #stick'em all in
opts[op.name] = op
if op.n_exp > 0 and len(op.parlist) != op.n_exp:
print "Error: Expecting %d parameters\n" \
"Have %d on command line (%s).\n" % \
(op.n_exp, len(op.parlist), op.parlist)
return None
elif len(argv) > 0:
print "Error: Expecting no loose parameters.\n" \
"Have %d loose parameters (or bad option) on " \
"command line (%s).\n" % (len(argv), argv)
return None
#go west young man
return opts
oplist.append(op)
op = afni_base.comopt('-areas_2', -2, \
["CA_ZOUZOU", "areea_6", "areea_4a", "areea_4p"])
oplist.append(op)
op = afni_base.comopt('-dsets', -1, [])
oplist.append(op)
op = afni_base.comopt('-sides', -1, ['left', 'right'])
oplist.append(op)
op = afni_base.comopt('-command', -1, [])
oplist.append(op)
opts = afni_base.getopts2(sys.argv, oplist)
if opts == None:
sys.exit()
afni_base.show_opts2(opts)
#find keys with -areas_
areas = []
for key in opts.keys():
if key.find('-areas') > -1: #here's one set of areas
areas.append(key)
#Now do the deed
for ak in areas:
op = opts[ak] #Get the areas_* option
atlas = op.parlist[0]
alist = op.parlist[1:] #the areas
for side in opts['-sides'].parlist:
for ar in alist:
com = "rm -f %s_%s* >& /dev/null" % (ar, side)
