def impl(time, interval, antenna1, antenna2,
time_centroid=None, exposure=None, flag_row=None,
uvw=None, weight=None, sigma=None,
chan_freq=None, chan_width=None,
vis=None, flag=None,
weight_spectrum=None, sigma_spectrum=None,
time_bin_secs=1.0, chan_bin_size=1):
# Get the number of channels + correlations
nchan, ncorr = chan_corrs(vis, flag, weight_spectrum, sigma_spectrum)
# Merge flag_row and flag arrays
flag_row = merge_flags(flag_row, flag)
# Generate row mapping metadata
row_meta = row_mapper(time, interval, antenna1, antenna2,
flag_row=flag_row, time_bin_secs=time_bin_secs)
# Generate channel mapping metadata
chan_meta = channel_mapper(nchan, chan_bin_size)
# Average row data
row_data = row_average(row_meta, antenna1, antenna2, flag_row=flag_row,
time_centroid=time_centroid, exposure=exposure,
uvw=uvw, weight=weight, sigma=sigma)
# Average channel data
chan_data = chan_average(chan_meta, chan_freq=chan_freq,
chan_width=chan_width)
# Average row and channel data
row_chan_data = row_chan_average(row_meta, chan_meta,
flag_row=flag_row, weight=weight,
vis=vis, flag=flag,
weight_spectrum=weight_spectrum,
sigma_spectrum=sigma_spectrum)
# Have to explicitly write it out because numba tuples
# are highly constrained types
return AverageOutput(row_meta.time,
row_meta.interval,
row_meta.flag_row,
row_data.antenna1,
row_data.antenna2,
row_data.time_centroid,
row_data.exposure,
row_data.uvw,
row_data.weight,
row_data.sigma,
chan_data.chan_freq,
chan_data.chan_width,
row_chan_data.vis,
row_chan_data.flag,
row_chan_data.weight_spectrum,
row_chan_data.sigma_spectrum)
def test_channel_mapper():
chan_map, out_chans = channel_mapper(64, 17)
uchan, counts = np.unique(chan_map, return_counts=True)
assert_array_equal(chan_map[0:17], 0)
assert_array_equal(chan_map[17:34], 1)
assert_array_equal(chan_map[34:51], 2)
assert_array_equal(chan_map[51:64], 3)
assert_array_equal(uchan, [0, 1, 2, 3])
assert_array_equal(counts, [17, 17, 17, 13])
assert out_chans == 4
def test_averager(time, ant1, ant2, flagged_rows, uvw, interval, weight, sigma,
frequency, chan_width, vis, flag, weight_spectrum,
sigma_spectrum, time_bin_secs, chan_bin_size):
time_centroid = time
exposure = interval
vis = vis(time.shape[0], nchan, ncorr)
flag = flag(time.shape[0], nchan, ncorr)
flag_row = np.zeros(time.shape, dtype=np.uint8)
# flagged_row and flag should agree
flag_row[flagged_rows] = 1
flag[flag_row.astype(np.bool), :, :] = 1
flag[~flag_row.astype(np.bool), :, :] = 0
assert_array_equal(flag.all(axis=(1, 2)).astype(np.uint8), flag_row)
row_meta = row_mapper(time, interval, ant1, ant2, flag_row, time_bin_secs)
chan_map, chan_bins = channel_mapper(nchan, chan_bin_size)
time_bl_row_map = _gen_testing_lookup(time_centroid, exposure, ant1, ant2,
flag_row, time_bin_secs, row_meta)
# Effective and Nominal rows associated with each output row
eff_idx, nom_idx = zip(*[(nrows, erows)
for _, _, nrows, erows in time_bl_row_map])
eff_idx = [ei for ei in eff_idx if len(ei) > 0]
# Check that the averaged times from the test and accelerated lookup match
assert_array_equal([t for t, _, _, _ in time_bl_row_map], row_meta.time)
avg = time_and_channel(time,
interval,
ant1,
ant2,
flag_row=flag_row,
time_centroid=time,
exposure=exposure,
uvw=uvw,
weight=weight,
sigma=sigma,
chan_freq=frequency,
chan_width=chan_width,
visibilities=vis,
flag=flag,
weight_spectrum=weight_spectrum,
sigma_spectrum=sigma_spectrum,
time_bin_secs=time_bin_secs,
chan_bin_size=chan_bin_size)
# Take mean time, but first ant1 and ant2
expected_time_centroids = [time_centroid[i].mean(axis=0) for i in eff_idx]
expected_times = [time[i].mean(axis=0) for i in nom_idx]
expected_ant1 = [ant1[i[0]] for i in nom_idx]
expected_ant2 = [ant2[i[0]] for i in nom_idx]
expected_flag_row = [flag_row[i].any(axis=0) for i in eff_idx]
# Take mean average, but sum of interval and exposure
expected_uvw = [uvw[i].mean(axis=0) for i in eff_idx]
expected_interval = [interval[i].sum(axis=0) for i in nom_idx]
expected_exposure = [exposure[i].sum(axis=0) for i in eff_idx]
expected_weight = [weight[i].sum(axis=0) for i in eff_idx]
expected_sigma = [_calc_sigma(sigma, weight, i) for i in eff_idx]
assert_array_equal(row_meta.time, expected_times)
assert_array_equal(row_meta.interval, expected_interval)
assert_array_equal(row_meta.flag_row, expected_flag_row)
assert_array_equal(avg.antenna1, expected_ant1)
assert_array_equal(avg.antenna2, expected_ant2)
assert_array_equal(avg.time_centroid, expected_time_centroids)
assert_array_equal(avg.exposure, expected_exposure)
assert_array_equal(avg.uvw, expected_uvw)
assert_array_equal(avg.weight, expected_weight)
assert_array_equal(avg.sigma, expected_sigma)
chan_avg_shape = (row_meta.interval.shape[0], chan_bins, flag.shape[2])
assert avg.visibilities.shape == chan_avg_shape
assert avg.flag.shape == chan_avg_shape
assert avg.weight_spectrum.shape == chan_avg_shape
assert avg.sigma_spectrum.shape == chan_avg_shape
chan_ranges = np.nonzero(np.ediff1d(chan_map, to_begin=1, to_end=1))[0]
# Three python loops. Slow, but works...
# Figure out some way to remove loops with numpy
for orow, idx in enumerate(eff_idx):
for ch, (cs, ce) in enumerate(zip(chan_ranges[:-1], chan_ranges[1:])):
for corr in range(ncorr):
in_flags = flag[idx, cs:ce, corr] != 0
out_flag = in_flags.all()
assert_array_equal(out_flag, avg.flag[orow, ch, corr])
flags_match = in_flags == out_flag
exp_vis = vis[idx, cs:ce, corr]
exp_wts = weight_spectrum[idx, cs:ce, corr]
exp_sigma = sigma_spectrum[idx, cs:ce, corr]
# Use matching to flags to decide which
# samples contribute to the bin
chunk_exp_vis = exp_vis[flags_match]
chunk_exp_wts = exp_wts[flags_match]
chunk_exp_sigma = exp_sigma[flags_match]
exp_vis = (chunk_exp_vis * chunk_exp_wts).sum()
exp_sigma = (chunk_exp_sigma**2 * chunk_exp_wts**2).sum()
exp_wts = chunk_exp_wts.sum()
if exp_wts != 0.0:
exp_vis = exp_vis / exp_wts
exp_sigma = np.sqrt(exp_sigma / (exp_wts**2))
assert_array_almost_equal(exp_vis, avg.visibilities[orow, ch,
corr])
assert_array_almost_equal(exp_wts,
avg.weight_spectrum[orow, ch, corr])
assert_array_almost_equal(exp_sigma,
avg.sigma_spectrum[orow, ch, corr])
