def shutdown_compute(self, cloud, args, task_arn):
"""
Close compute: terminate and then if running on AWS ECS, stop the task.
"""
print("\n....... Shutdown System")
self.terminate()
# Note that container should be set up to terminate once compute has
# been terminated. However, it doesn't hurt to clean up by making sure
# that the container is killed
# if ecs, then stop the task
if args.remote_type == "aws" and (task_arn is not None):
cloud.ecs_stop_task(task_arn)
# if it's remote and docker, then kill container
if cloud and self.remote():
# ensure we have the container id
if self.container_id:
utils.remote_run(self.host_node,
'docker stop ' + self.container_id)
else:
logging.warning("Docker did not shut down, could not " +
"locate container id")
elif not args.no_docker:
# stops local docker
utils.docker_stop()
def _exec_experiment(self, host_node, experiment_id, experiment_prefix,
config_json, param_sweeps=None):
utils.remote_run(
host_node,
self._run_command(host_node, experiment_id, experiment_prefix,
config_json, param_sweeps))
if self.export:
utils.remote_run(
host_node,
self._upload_command(host_node, experiment_id, experiment_prefix))
def _create_experiment(self, host_node):
"""Creates new MLFlow experiment remotely."""
experiment_prefix = datetime.datetime.now().strftime('%y%m%d-%H%M')
if self.use_docker:
# pylint: disable=anomalous-backslash-in-string
command = '''
docker exec -it {docker_id} bash -c "
source activate {anaenv}
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
export RUN_DIR=$HOME/agief-remote-run
pip install -e \$RUN_DIR/pagi --quiet
pagi --help
pip install -e \$RUN_DIR/rsm --quiet
pip install -e \$RUN_DIR/{project} --quiet
cd \$RUN_DIR/{project}
mlflow experiments create {prefix}
"
'''.format(anaenv='tensorflow',
prefix=experiment_prefix,
docker_id=self.docker_id,
project=self.project)
else:
command = '''
source {remote_env} {anaenv}
export RUN_DIR=$HOME/agief-remote-run
pip install -e $RUN_DIR/pagi --quiet
pip install -e $RUN_DIR/{project} --quiet
cd $RUN_DIR/{project}
mlflow experiments create {prefix}
'''.format(anaenv='tensorflow',
remote_env=host_node.remote_env_path,
prefix=experiment_prefix,
project=self.project)
remote_output = utils.remote_run(host_node, command)
command_output = [
s for s in remote_output if 'Created experiment' in s
]
command_output = command_output[0].strip().split(' ')
experiment_id = int(command_output[-1])
return experiment_id, experiment_prefix
def remote_docker_launch_compute(self, host_node):
"""
Assumes there exists a private key for the given
ec2 instance, at keypath
"""
print("\n....... Launch compute node in a docker container "
"on a remote host.")
commands = '''
export VARIABLES_FILE={0}
source {0}
cd $AGI_HOME/bin/node_coordinator
./run-in-docker.sh -d
'''.format(host_node.remote_variables_file)
return utils.remote_run(host_node, commands)
def _launch_docker(self, host_node):
"""Launch the Docker container on the remote machine."""
assert self.docker_image is not None, 'Docker image not provided.'
command = '''
export RUN_DIR=$HOME/agief-remote-run
docker pull {docker_image}
docker run -d -t --runtime=nvidia --ipc=host --mount type=bind,source=$RUN_DIR,target=$RUN_DIR \
{docker_image} bash
'''.format(docker_image=self.docker_image)
remote_output = utils.remote_run(host_node, command)
command_output = [s for s in remote_output]
command_output = command_output[-1].strip()
self.docker_id = command_output
return command_output
def run_sweeps(self, compute_node, cloud, args):
"""
Perform parameter sweep steps, and run experiment for each step.
"""
print("\n........ Run Sweeps")
exps_filename = self.experiment_utils.experiment_def_file()
if not os.path.exists(exps_filename):
msg = "Experiment file does not exist at: " + exps_filename
raise Exception(msg)
# Silently remove older log file if exists
log_filepath = self.experiment_utils.runpath(self.LOG_FILENAME)
if compute_node.remote():
utils.remote_run(compute_node.host_node, 'rm ' + log_filepath)
else:
utils.remove_file(log_filepath, True)
with open(exps_filename) as exps_file:
filedata = json.load(exps_file)
for exp_i in filedata['experiments']:
import_files = exp_i['import-files'] # import files dictionary
logging.debug("Import Files Dictionary = \n" +
json.dumps(import_files, indent=4))
base_entity_filename = import_files['file-entities']
base_data_filenames = import_files['file-data']
exp_ll_data_filepaths = []
if 'load-local-files' in exp_i:
load_local_files = exp_i['load-local-files']
if 'file-data' in load_local_files:
exp_ll_data_filepaths = list(
map(self.experiment_utils.runpath,
load_local_files['file-data'])
)
run_parameterset_partial = (
functools.partial(
self.run_parameterset,
compute_node=compute_node,
cloud=cloud,
args=args,
compute_data_filepaths=exp_ll_data_filepaths)
)
if 'parameter-sweeps' not in exp_i or (
len(exp_i['parameter-sweeps']) == 0):
print("No parameters to sweep, just run once.")
exp_entity_filepath, exp_data_filepaths = (
self.create_all_input_files(base_entity_filename,
base_data_filenames)
)
run_parameterset_partial(entity_filepath=exp_entity_filepath,
data_filepaths=exp_data_filepaths)
else:
# array of sweep definitions
for param_sweep in exp_i['parameter-sweeps']:
counters = self.setup_parameter_sweepers(param_sweep)
while True:
exp_entity_filepath, exp_data_filepaths = (
self.create_all_input_files(
base_entity_filename,
base_data_filenames)
)
reset, sweep_param_vals = self.inc_parameter_set(
compute_node, args,
exp_entity_filepath,
counters
)
if reset:
break
run_parameterset_partial(
entity_filepath=exp_entity_filepath,
data_filepaths=exp_data_filepaths,
sweep_param_vals=sweep_param_vals
)
def main():
"""
The main scope of the run-framework containing the high level code
"""
print("------------------------------------------")
print("---- run-framework ----")
print("------------------------------------------")
# Record experiment start time
exp_start_time = datetime.now()
args = setup_arg_parsing()
# setup logging
log_format = ("[%(filename)s:%(lineno)s - %(funcName)s() " +
"- %(levelname)s] %(message)s")
logging.basicConfig(format=log_format,
level=utils.logger_level(args.logging))
logging.debug("Python Version: " + sys.version)
logging.debug("Arguments: %s", args)
exps_file = args.exps_file if args.exps_file else ""
experiment = Experiment(args.debug_no_run, LaunchMode.from_args(args),
exps_file, args.no_compress, args.csv_output)
# 1) Generate input files
if args.main_class:
compute_node = Compute(host_node=HostNode(), port=args.port)
compute_node.launch(experiment, main_class=args.main_class,
no_local_docker=args.no_docker)
experiment.generate_input_files_locally(compute_node)
compute_node.terminate()
return
# *) all other use cases (non Generate input files)
cloud = Cloud()
if args.upload and not (args.export or args.export_compute):
logging.warning("Uploading experiment to S3 is enabled, but " +
"'export experiment' is not, so the most important " +
"files (output entity.json and data.json) " +
"will be missing")
if args.remote_type != "local":
host_node = HostNode(args.host, args.user, args.ssh_keypath,
args.remote_variables_file, args.ssh_port)
else:
host_node = HostNode(args.host, args.user)
compute_node = Compute(host_node, args.port)
check_args(args, compute_node)
# 2) Setup infrastructure (on AWS or nothing to do locally)
ips = {'ip_public': args.host, 'ip_private': None}
ips_pg = {'ip_public': None, 'ip_private': None}
instance_id = None
is_pg_ec2 = args.pg_instance and args.pg_instance[:2] == 'i-'
if args.remote_type == "aws":
# start Compute ec2 either from instanceid or amiid
if args.instanceid:
ips = cloud.ec2_start_from_instanceid(args.instanceid)
instance_id = args.instanceid
else:
ips, instance_id = cloud.ec2_start_from_ami('run-fwk auto',
args.amiid,
int(args.ami_ram))
# start DB ec2, from instanceid
if args.pg_instance and is_pg_ec2:
ips_pg = cloud.ec2_start_from_instanceid(args.pg_instance)
else:
ips_pg = {'ip_private': args.pg_instance}
elif args.pg_instance:
if is_pg_ec2:
logging.error("The pg instance is set to an ec2 instance id,"
" but you are not running AWS.")
exit(1)
ips_pg = {
'ip_public': args.pg_instance,
'ip_private': args.pg_instance
}
# Infrastructure has been started
# Try to run experiment, and if fails with exception,
# still shut down infrastructure
failed = False
try:
compute_node.host_node.host = ips['ip_public']
compute_node.port = args.port
# TEMPORARY HACK for ECS
# Set the DB_HOST environment variable
if args.pg_instance:
os.putenv("DB_HOST", ips_pg['ip_private'])
# 3) Sync code and run-home
if args.sync:
cloud.sync_experiment(compute_node.host_node)
# 3.5) Prepare data and sync from S3 if necessary
# This is typically used to download output files from
# a previous experiment to be used as input
if args.prepare_data_from_prefix:
cloud.remote_download_output(args.prepare_data_from_prefix,
compute_node.host_node)
# 4) Launch Compute (remote or local)
# *** IF Mode == 'Per Session' ***
if ((LaunchMode.from_args(args) is LaunchMode.per_session) and
args.launch_compute):
compute_node.launch(experiment, cloud=cloud,
main_class=args.main_class,
no_local_docker=args.no_docker)
# 5) Run experiments
# This includes per experiment 'export results' and 'upload results'
if args.exps_file:
experiment.run_sweeps(compute_node, cloud, args)
experiment.persist_prefix_history(cloud)
except Exception as err: # pylint: disable=W0703
failed = True
logging.error("Something failed running sweeps generally. If the "
"error occurred in a specific parameter set it should "
"have been caught there. Attempt to shut down "
"infrastructure if running, and exit.")
logging.error(err)
print('-'*60)
traceback.print_exc(file=sys.stdout)
print('-'*60)
# Shutdown the Docker container
print("Attempting to shutdown Docker container...")
if host_node.remote() and compute_node.container_id:
utils.remote_run(host_node,
'docker stop ' + compute_node.container_id)
elif not host_node.remote() and not args.no_docker:
utils.docker_stop()
# 6) Shutdown framework
if args.shutdown:
if LaunchMode.from_args(args) is LaunchMode.per_session:
compute_node.terminate()
# Shutdown infrastructure
if args.remote_type == "aws":
cloud.ec2_stop(instance_id)
if is_pg_ec2:
cloud.ec2_stop(args.pg_instance)
# Record experiment end time
exp_end_time = datetime.now()
# Log the experiment runtime in d:h:m:s:ms format
exp_runtime = utils.format_timedelta(exp_end_time - exp_start_time)
print("Experiment finished in %d days, %d hr, %d min, %d s" %
tuple(exp_runtime))
if failed:
exit(1)
def run_sweeps(self, config, config_json, args, host_node):
"""Run the sweeps"""
if args.phase == 'train':
prefixes = []
print('........ Training\n')
hparams_sweeps = self._parse_hparams_sweeps(
config['parameter-sweeps'])
for i, hparams in enumerate(hparams_sweeps):
run_prefix = datetime.datetime.now().strftime('%y%m%d-%H%M')
prefixes.append(run_prefix)
summary_dir = os.path.join(
config['experiment-parameters']['summary_dir'], run_prefix)
# Start experiment
utils.remote_run(
host_node,
self._train_op(host_node.remote_variables_file,
config['experiment-parameters'],
config['train-parameters'], summary_dir,
hparams))
with open('prefixes.txt', 'w') as prefix_file:
prefix_file.write(','.join(prefixes))
if args.phase == 'eval' or args.phase == 'classify':
if args.prefixes is None:
raise Exception('No prefixes provided.')
prefixes = [x.strip() for x in args.prefixes.split(',')]
for i, prefix in enumerate(prefixes):
summary_dir = os.path.join(
config['experiment-parameters']['summary_dir'], prefix)
if args.phase == 'eval':
# Export experiment for each prefix
print('........ Evaluating: {0}\n'.format(prefix))
for eval_sweep in config['eval-sweeps']:
utils.remote_run(
host_node,
self._eval_op(host_node.remote_variables_file,
config['experiment-parameters'],
config['train-parameters'],
summary_dir, eval_sweep,
hparams_sweeps[i]))
if args.phase == 'classify':
# Classification
print('........ Classifying: {0}\n'.format(prefix))
for classify_sweep in config['classify-sweeps']:
for model in classify_sweep['model']:
utils.remote_run(
host_node,
self._classify_op(
host_node.remote_variables_file,
summary_dir, classify_sweep['dataset'],
model,
config['train-parameters']['max_steps'],
config['experiment-parameters']['model']))
