Python ssl01_scan_int8 Examples

Example #1

def test_ssl01_scan_int8_f():

    # 4 haplotypes,
    h = np.array([[0, 0, 1, 1], [0, 0, 1, 1], [0, 0, 1, 1]], dtype='i1')
    expect0 = [1, 2, 3]
    expect1 = [1, 2, 3]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #2

def test_ssl01_scan_int8_d():

    # 2 haplotypes, different
    h = np.array([[0, 1], [0, 1], [1, 0], [1, 0]], dtype='i1')
    expect0 = [0, 0, 0, 0]
    expect1 = [0, 0, 0, 0]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #3

def test_ssl01_scan_int8_e():

    # 3 haplotypes, 3 pairs, identical
    h = np.array([[0, 0, 0], [0, 0, 0], [0, 0, 0]], dtype='i1')
    expect0 = [3, 6, 9]
    expect1 = [0, 0, 0]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #4

def test_ssl01_scan_int8_c():

    # 2 haplotypes, identical
    h = np.array([[0, 0], [0, 0], [1, 1], [1, 1]], dtype='i1')
    expect0 = [1, 2, 0, 0]
    expect1 = [0, 0, 3, 4]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #5

File: test_selection.py Project: hardingnj/scikit-allel

def test_ssl01_scan_int8_f():

    # 4 haplotypes,
    h = np.array([[0, 0, 1, 1],
                  [0, 0, 1, 1],
                  [0, 0, 1, 1]], dtype='i1')
    expect0 = [1, 2, 3]
    expect1 = [1, 2, 3]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #6

File: test_selection.py Project: hardingnj/scikit-allel

def test_ssl01_scan_int8_e():

    # 3 haplotypes, 3 pairs, identical
    h = np.array([[0, 0, 0],
                  [0, 0, 0],
                  [0, 0, 0]], dtype='i1')
    expect0 = [3, 6, 9]
    expect1 = [0, 0, 0]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #7

File: test_selection.py Project: hardingnj/scikit-allel

def test_ssl01_scan_int8_b():

    # 2 haplotypes, identical
    h = np.array([[1, 1],
                  [1, 1],
                  [1, 1]], dtype='i1')
    expect0 = [0, 0, 0]
    expect1 = [1, 2, 3]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)

Example #8

File: test_selection.py Project: hardingnj/scikit-allel

def test_ssl01_scan_int8_d():

    # 2 haplotypes, different
    h = np.array([[0, 1],
                  [0, 1],
                  [1, 0],
                  [1, 0]], dtype='i1')
    expect0 = [0, 0, 0, 0]
    expect1 = [0, 0, 0, 0]
    actual0, actual1 = ssl01_scan_int8(h, sum_ssl)
    assert_array_equal(expect0, actual0)
    assert_array_equal(expect1, actual1)