def get_session_data(self, ophys_experiment_id: int, fixed: bool = False):
"""
Note -- This method mocks the behavior of a cache. Future
development will include an NWB reader to read from
a true local cache (once nwb files are created).
TODO: Using `fixed` will raise a NotImplementedError since there
is no real cache.
"""
if fixed:
raise NotImplementedError
fetch_session = partial(self.fetch_api.get_session_data,
ophys_experiment_id)
return call_caching(
fetch_session,
lambda x: x, # not writing anything
lazy=False, # can't actually read from file cache
read=fetch_session)
def get_behavior_session_data(self,
behavior_session_id: int,
fixed: bool = False):
"""
Note -- This method mocks the behavior of a cache. No files are
actually downloaded for local access. Instead, it adds the
session id to a csv log. If the "fixed" parameter is true,
then the API will first check to ensure that the log is present
in the record before pulling the data.
"""
# TODO: Future development will include an NWB reader to read from
# a true local cache (once nwb files are created)
# For now just check the log if pass `fixed`
path = self.get_cache_path(None, self.BEHAVIOR_ANALYSIS_LOG_KEY)
if fixed:
self.logger.warning(
"Warning! Passing `fixed=True` does not ensure that the "
"underlying data has not changed, as no data are actually "
"cached locally. The log will be updated each time the data "
"are pulled from the database for tracking purposes.")
try:
record = pd.read_csv(path)
except FileNotFoundError:
raise MissingDataError(
"No analysis log found! Add to the log by getting "
"session data with fixed=False.")
if behavior_session_id not in record["behavior_session_id"].values:
raise MissingDataError(
f"Data for ophys experiment {behavior_session_id} not "
"found!")
fetch_session = partial(self.fetch_api.get_behavior_only_session_data,
behavior_session_id)
write_log = partial(_write_log,
path=path,
key_name="behavior_session_id",
key_value=behavior_session_id)
return call_caching(
fetch_session,
write_log,
lazy=False, # can't actually read from file cache
read=fetch_session)