def post(self):
skid = self.current_user
tl = text_locale['handlers']
ag_login_id = ag_data.get_user_for_kit(skid)
ag_login_info = ag_data.get_login_info(ag_login_id)[0]
animal_survey_id = self.get_argument('survey_id', None)
sitebase = media_locale['SITEBASE']
if not animal_survey_id:
animal_survey_id = binascii.hexlify(os.urandom(8))
new_survey = True
else:
new_survey = False
form = self.animal_survey()
form.process(data=self.request.arguments)
data = {'questions': form.data}
participant_name = form['Pet_Information_127_0'].data[0]
# If the participant already exists, stop them outright
if new_survey and \
ag_data.check_if_consent_exists(ag_login_id, participant_name):
errmsg = url_escape(tl['PARTICIPANT_EXISTS'] % participant_name)
url = sitebase + "/authed/portal/?errmsg=%s" % errmsg
self.redirect(url)
return
consent = {
'login_id': ag_login_id,
'participant_name': participant_name,
'participant_email': ag_login_info['email'],
'assent_obtainer': 'ANIMAL_SURVEY',
'parent_1_name': 'ANIMAL_SURVEY',
'parent_2_name': 'ANIMAL_SURVEY',
'survey_id': animal_survey_id,
'is_juvenile': True,
'deceased_parent': False,
'obtainer_name': 'ANIMAL_SURVEY',
'age_range': 'ANIMAL_SURVEY'
}
redis.hset(animal_survey_id, 'consent', dumps(consent))
redis.hset(animal_survey_id, 0, dumps(data))
redis.expire(animal_survey_id, 86400)
store_survey(primary_animal_survey, animal_survey_id)
if not new_survey:
message = urlencode([('errmsg', tl['SUCCESSFULLY_EDITED'] %
participant_name)])
else:
message = urlencode([('errmsg', tl['SUCCESSFULLY_ADDED'] %
participant_name)])
url = sitebase + '/authed/portal/?%s' % message
self.redirect(url)
def post(self):
tl = text_locale['handlers']
participant_name = self.get_argument("participant_name").strip()
participant_email = self.get_argument("participant_email").strip()
age_range = self.get_argument("age_range")
parent_1_name = self.get_argument("parent_1_name", None)
parent_2_name = self.get_argument("parent_2_name", None)
obtainer_name = self.get_argument("obtainer_name", None)
deceased_parent = self.get_argument("deceased_parent", 'No')
sitebase = media_locale['SITEBASE']
if not participant_name or not participant_email:
self.render("new_participant.html",
skid=self.current_user,
message=tl['MISSING_NAME_EMAIL'])
return
ag_login_id = ag_data.get_user_for_kit(self.current_user)
# If the participant already exists, stop them outright
if ag_data.check_if_consent_exists(ag_login_id, participant_name):
errmsg = url_escape(tl['PARTICIPANT_EXISTS'] % participant_name)
url = sitebase + "/authed/portal/?errmsg=%s" % errmsg
self.redirect(url)
return
human_survey_id = binascii.hexlify(os.urandom(8))
consent = {
'participant_name': participant_name,
'participant_email': participant_email,
'parent_1_name': parent_1_name,
'parent_2_name': parent_2_name,
'is_juvenile': True if age_range != '18-plus' else False,
'deceased_parent': deceased_parent,
'obtainer_name': obtainer_name,
'age_range': age_range,
'login_id': ag_login_id,
'survey_id': human_survey_id
}
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.expire(human_survey_id, 86400)
self.set_secure_cookie('human_survey_id', human_survey_id)
self.redirect(sitebase + "/authed/survey_main/")
def post(self):
tl = text_locale['handlers']
participant_name = self.get_argument("participant_name").strip()
participant_email = self.get_argument("participant_email").strip()
age_range = self.get_argument("age_range")
parent_1_name = self.get_argument("parent_1_name", None)
parent_2_name = self.get_argument("parent_2_name", None)
obtainer_name = self.get_argument("obtainer_name", None)
deceased_parent = self.get_argument("deceased_parent", 'No')
sitebase = media_locale['SITEBASE']
if not participant_name or not participant_email:
self.render("new_participant.html", skid=self.current_user,
message=tl['MISSING_NAME_EMAIL'])
return
ag_login_id = ag_data.get_user_for_kit(self.current_user)
# If the participant already exists, stop them outright
if ag_data.check_if_consent_exists(ag_login_id, participant_name):
errmsg = url_escape(tl['PARTICIPANT_EXISTS'] % participant_name)
url = sitebase + "/authed/portal/?errmsg=%s" % errmsg
self.redirect(url)
return
human_survey_id = binascii.hexlify(os.urandom(8))
consent = {'participant_name': participant_name,
'participant_email': participant_email,
'parent_1_name': parent_1_name,
'parent_2_name': parent_2_name,
'is_juvenile': True if age_range != '18-plus' else False,
'deceased_parent': deceased_parent,
'obtainer_name': obtainer_name,
'age_range': age_range,
'login_id': ag_login_id,
'survey_id': human_survey_id}
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.expire(human_survey_id, 86400)
self.set_secure_cookie('human_survey_id', human_survey_id)
self.redirect(sitebase + "/authed/survey_main/")
def post(self):
skid = self.current_user
tl = text_locale['handlers']
ag_login_id = ag_data.get_user_for_kit(skid)
survey_id = self.get_argument('survey_id', None)
survey_type = self.get_argument('type')
participant_name = url_unescape(self.get_argument('participant_name'))
sitebase = media_locale['SITEBASE']
if not survey_id:
survey_id = binascii.hexlify(os.urandom(8))
sec_survey = self.sec_surveys[survey_type]
survey_class = make_survey_class(sec_survey.groups[0],
survey_type='SecondarySurvey')
form = survey_class()
form.process(data=self.request.arguments)
data = {'questions': form.data}
consent = {
'login_id': ag_login_id,
'participant_name': participant_name,
'survey_id': survey_id,
'secondary': True
}
redis.hset(survey_id, 'consent', dumps(consent))
redis.hset(survey_id, 0, dumps(data))
redis.expire(survey_id, 86400)
store_survey(sec_survey, survey_id)
if survey_id:
message = urlencode([
('errmsg', tl['SUCCESSFULLY_EDITED'] % participant_name)
])
else:
message = urlencode([
('errmsg', tl['SUCCESSFULLY_ADDED'] % participant_name)
])
url = '%s/authed/portal/?%s' % (sitebase, message)
self.redirect(url)
def post(self):
skid = self.current_user
tl = text_locale['handlers']
ag_login_id = ag_data.get_user_for_kit(skid)
survey_id = self.get_argument('survey_id', None)
survey_type = self.get_argument('type')
participant_name = self.get_argument('participant_name')
sitebase = media_locale['SITEBASE']
if not survey_id:
survey_id = binascii.hexlify(os.urandom(8))
sec_survey = self.sec_surveys[survey_type]
survey_class = make_survey_class(sec_survey.groups[0],
survey_type='SecondarySurvey')
form = survey_class()
form.process(data=self.request.arguments)
data = {'questions': form.data}
consent = {
'login_id': ag_login_id,
'participant_name': participant_name,
'survey_id': survey_id,
'secondary': True
}
redis.hset(survey_id, 'consent', dumps(consent))
redis.hset(survey_id, 0, dumps(data))
redis.expire(survey_id, 86400)
store_survey(sec_survey, survey_id)
if survey_id:
message = urlencode([('errmsg', tl['SUCCESSFULLY_EDITED'] %
participant_name)])
else:
message = urlencode([('errmsg', tl['SUCCESSFULLY_ADDED'] %
participant_name)])
url = '%s/authed/portal/?%s' % (sitebase, message)
self.redirect(url)
def post(self):
# see if we're coming from an edit
human_survey_id = self.get_argument('survey_id', None)
page_number = int(self.get_argument('page_number'))
if human_survey_id is None:
# we came from consent
human_survey_id = self.get_secure_cookie('human_survey_id')
if human_survey_id is None:
err_msg = url_escape("There was an unexpected error.")
self.redirect(media_locale['SITEBASE'] + "/authed/portal/?errmsg=%s" % err_msg)
return
else:
# we came from participant_overview
consent = ag_data.getConsent(human_survey_id)
self.set_secure_cookie('human_survey_id', human_survey_id)
data = primary_human_survey.fetch_survey(human_survey_id)
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.hset(human_survey_id, 'existing', dumps(data))
redis.expire(human_survey_id, 86400)
next_page_number = page_number + 1
if page_number >= 0:
form_data = surveys[page_number]()
form_data.process(data=self.request.arguments)
data = {'questions': form_data.data}
redis.hset(human_survey_id, page_number, dumps(data))
progress = int(100.0*(page_number+2)/(len(primary_human_survey.groups) + 1))
# if this is not the last page, render the next page
if next_page_number < len(surveys):
the_form = surveys[next_page_number]()
existing_responses = redis.hget(human_survey_id, 'existing')
if existing_responses:
existing_responses = loads(existing_responses)
the_form = surveys[next_page_number](data=existing_responses)
title = primary_human_survey.groups[next_page_number].name
self.render('human_survey.html', the_form=the_form,
skid=self.current_user, TITLE=title,
page_number=next_page_number,
progress=progress)
else:
# only get the cookie if you complete the survey
self.clear_cookie('human_survey_id')
self.set_secure_cookie('completed_survey_id', human_survey_id)
store_survey(primary_human_survey, human_survey_id)
self.redirect(media_locale['SITEBASE'] +
'/authed/human_survey_completed/')
def post(self):
# see if we're coming from an edit
human_survey_id = self.get_argument('survey_id', None)
page_number = int(self.get_argument('page_number'))
sitebase = media_locale['SITEBASE']
if human_survey_id is None:
# we came from consent
human_survey_id = self.get_secure_cookie('human_survey_id')
if human_survey_id is None:
err_msg = url_escape("There was an unexpected error.")
self.redirect(sitebase + "/authed/portal/?errmsg=%s" % err_msg)
return
else:
# we came from participant_overview
consent = ag_data.getConsent(human_survey_id)
# make sure is string so can be serialized
consent['date_signed'] = str(consent['date_signed'])
self.set_secure_cookie('human_survey_id', human_survey_id)
data = primary_human_survey.fetch_survey(human_survey_id)
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.hset(human_survey_id, 'existing', dumps(data))
redis.expire(human_survey_id, 86400)
next_page_number = page_number + 1
if page_number >= 0:
form_data = surveys[page_number]()
form_data.process(data=self.request.arguments)
data = {'questions': form_data.data}
redis.hset(human_survey_id, page_number, dumps(data))
progress = int(100.0 * (page_number + 2) / (len(phs_groups) + 1))
# if this is not the last page, render the next page
if next_page_number < len(surveys):
the_form = surveys[next_page_number]()
existing_responses = redis.hget(human_survey_id, 'existing')
if existing_responses:
existing_responses = loads(existing_responses)
the_form = surveys[next_page_number](data=existing_responses)
title = phs_groups[next_page_number].name
self.render('human_survey.html', the_form=the_form,
skid=self.current_user, TITLE=title,
page_number=next_page_number,
progress=progress)
else:
# only get the cookie if you complete the survey
self.clear_cookie('human_survey_id')
self.set_secure_cookie('completed_survey_id', human_survey_id)
store_survey(primary_human_survey, human_survey_id)
existing = redis.hget(human_survey_id, 'existing')
if existing is None:
# Send consent info email since new participant
consent_info = ag_data.getConsent(human_survey_id)
try:
message = build_consent_form(consent_info)
send_email(message, 'American Gut-Signed Consent Form(s)',
recipient=consent_info['participant_email'],
sender='*****@*****.**', html=True)
except:
logging.exception('Error sending signed consent form for '
'survey ID: %s to email: %s' %
(human_survey_id,
consent_info['participant_email']))
self.redirect(sitebase + '/authed/human_survey_completed/')
def test_edit_survey(self):
# creating a new participant for existing ag_login_id
main_survey_id = '38792874'
sec_survey_id_fermented = '3879287455'
sec_survey_id_surfer = '3879287456'
ag_login_id = 'd8592c74-9694-2135-e040-8a80115d6401'
participant_name = 'test_dude_stefan'
email = '*****@*****.**'
with_fk_inserts =\
[(main_survey_id, _id, 'Unspecified') for _id in
[1, 2, 3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19,
20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,
35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
50, 51, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80,
81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95,
96, 107, 109, 110, 111, 112, 114, 146, 148, 149, 153, 154,
155, 156, 157, 158, 159, 160, 162, 163, 164]]
without_fk_inserts =\
[(main_survey_id, _id, '[""]') for _id in
[98, 99, 150, 103, 104, 105, 106, 108, 113, 115, 116, 117, 118,
119, 120, 122, 124, 126, 101]]
self.mock_login(ag_data.ut_get_supplied_kit_id(ag_login_id))
s = Survey(main_survey_id)
s.store_survey(
{u'login_id': ag_login_id,
u'age_range': u'18-plus',
u'parent_1_name': None,
u'participant_email': email,
u'obtainer_name': None,
u'parent_2_name': None,
u'deceased_parent': u'No',
u'participant_name': participant_name,
u'survey_id': main_survey_id,
u'is_juvenile': False},
with_fk_inserts, without_fk_inserts)
# confirm that no secondary surveys are present
response = self.post('/participants/%s' % participant_name,
{'participant_type': 'human'})
self.assertEqual(response.code, 200)
self.assertNotIn('fermented', response.body)
self.assertNotIn('surf', response.body)
# add a new fermented food survey
data = {'questions': {'Fermented_Foods_170_0': [''],
'Fermented_Foods_173_0': [''],
'Fermented_Foods_169_0': None,
'Fermented_Foods_171_0': ['13'],
'Fermented_Foods_168_0': [''],
'Fermented_Foods_167_0': ['1'],
'Fermented_Foods_166_0': ['0'],
'Fermented_Foods_165_0': ['0'],
'Fermented_Foods_172_0': ['']}}
consent = {
'login_id': ag_login_id,
'participant_name': participant_name,
'survey_id': sec_survey_id_fermented,
'secondary': True
}
redis.hset(sec_survey_id_fermented, 'consent', dumps(consent))
redis.hset(sec_survey_id_fermented, 0, dumps(data))
redis.expire(sec_survey_id_fermented, 86400)
store_survey(fermented_survey, sec_survey_id_fermented)
# confirm that now a fermented food survey is present
response = self.post('/participants/%s' % participant_name,
{'participant_type': 'human'})
self.assertEqual(response.code, 200)
self.assertIn('fermented', response.body)
self.assertNotIn('surf', response.body)
self.assertIn('secondary_survey/?type=%s&participant_name=%s&survey=%s'
% ('fermented',
participant_name,
sec_survey_id_fermented), response.body)
# check human_survey_completed links:
# TODO: I don't know how to set a secured cookie for
# completed_survey_id and could need some help to actually test values
# for the rendered page /authed/human_survey_completed/
# response = self.get('/authed/human_survey_completed/')
# add a new surfers survey
data = {'questions': {'Surfers_182_0': ['0'],
'Surfers_176_0': ['0'],
'Surfers_175_0': ['0'],
'Surfers_185_0': ['0'],
'Surfers_179_0': ['0'],
'Surfers_183_0': ['0'],
'Surfers_180_0': ['0'],
'Surfers_174_0': ['0'],
'Surfers_178_0': ['0'],
'Surfers_181_0': ['0'],
'Surfers_177_0': ['0'],
'Surfers_184_0': ['0']}}
consent = {
'login_id': ag_login_id,
'participant_name': participant_name,
'survey_id': sec_survey_id_surfer,
'secondary': True
}
redis.hset(sec_survey_id_surfer, 'consent', dumps(consent))
redis.hset(sec_survey_id_surfer, 0, dumps(data))
redis.expire(sec_survey_id_surfer, 86400)
store_survey(surf_survey, sec_survey_id_surfer)
# confirm that now a surfers and fermented food survey is present
response = self.post('/participants/%s' % participant_name,
{'participant_type': 'human'})
self.assertEqual(response.code, 200)
self.assertIn('fermented', response.body)
self.assertIn('surf', response.body)
self.assertIn('secondary_survey/?type=%s&participant_name=%s&survey=%s'
% ('fermented',
participant_name,
sec_survey_id_fermented),
response.body)
self.assertIn('secondary_survey/?type=%s&participant_name=%s&survey=%s'
% ('surf',
participant_name,
sec_survey_id_surfer),
response.body)
def post(self):
# see if we're coming from an edit
human_survey_id = self.get_argument('survey_id', None)
page_number = int(self.get_argument('page_number'))
sitebase = media_locale['SITEBASE']
if human_survey_id is None:
# we came from consent
human_survey_id = self.get_secure_cookie('human_survey_id')
if human_survey_id is None:
err_msg = url_escape("There was an unexpected error.")
self.redirect(sitebase + "/authed/portal/?errmsg=%s" % err_msg)
return
else:
# we came from participant_overview
consent = ag_data.getConsent(human_survey_id)
# make sure is string so can be serialized
consent['date_signed'] = str(consent['date_signed'])
self.set_secure_cookie('human_survey_id', human_survey_id)
data = primary_human_survey.fetch_survey(human_survey_id)
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.hset(human_survey_id, 'existing', dumps(data))
redis.expire(human_survey_id, 86400)
next_page_number = page_number + 1
if page_number >= 0:
form_data = surveys[page_number]()
form_data.process(data=self.request.arguments)
data = {'questions': form_data.data}
redis.hset(human_survey_id, page_number, dumps(data))
progress = int(100.0 * (page_number + 2) / (len(phs_groups) + 1))
# if this is not the last page, render the next page
if next_page_number < len(surveys):
the_form = surveys[next_page_number]()
existing_responses = redis.hget(human_survey_id, 'existing')
if existing_responses:
existing_responses = loads(existing_responses)
the_form = surveys[next_page_number](data=existing_responses)
title = phs_groups[next_page_number].name
self.render('human_survey.html',
the_form=the_form,
skid=self.current_user,
TITLE=title,
page_number=next_page_number,
progress=progress)
else:
# only get the cookie if you complete the survey
self.clear_cookie('human_survey_id')
self.set_secure_cookie('completed_survey_id', human_survey_id)
store_survey(primary_human_survey, human_survey_id)
existing = redis.hget(human_survey_id, 'existing')
if existing is None:
# Send consent info email since new participant
consent_info = ag_data.getConsent(human_survey_id)
try:
message = build_consent_form(consent_info)
send_email(message,
'American Gut-Signed Consent Form(s)',
recipient=consent_info['participant_email'],
sender='*****@*****.**',
html=True)
except:
logging.exception(
'Error sending signed consent form for '
'survey ID: %s to email: %s' %
(human_survey_id, consent_info['participant_email']))
self.redirect(sitebase + '/authed/human_survey_completed/')
def post(self):
tl = text_locale['handlers']
deceased_parent = self.get_argument("deceased_parent", None)
participant_name = self.get_argument("participant_name")
participant_email = self.get_argument("participant_email")
is_juvenile = self.get_argument("is_juvenile", 'off')
parent_1_name = self.get_argument("parent_1_name", None)
parent_2_name = self.get_argument("parent_2_name", None)
ag_login_id = ag_data.get_user_for_kit(self.current_user)
kit_email = ag_data.get_user_info(self.current_user)['email']
# Check if the participant is on the exceptions list
is_exception = (
participant_name
in ag_data.getParticipantExceptions(ag_login_id))
# If the participant already exists, stop them outright
if ag_data.check_if_consent_exists(ag_login_id, participant_name):
errmsg = url_escape(tl['PARTICIPANT_EXISTS'] % participant_name)
self.redirect(media_locale['SITEBASE'] + "/authed/portal/?errmsg=%s" % errmsg)
return
if is_juvenile == 'off' and is_exception:
errmsg = url_escape(tl["JUVENILE_CONSENT_EXPECTED"] %
participant_name)
self.redirect(media_locale['SITEBASE'] + "/authed/portal/?errmsg=%s" % errmsg)
return
if is_juvenile == 'on':
# If they aren't already an exception, we need to verify them
if not is_exception:
alert_message = tl['MINOR_PARENTAL_BODY']
subject = ("AGJUVENILE: %s (ag_login_id: %s) is a child"
% (participant_name, ag_login_id))
message = MESSAGE_TEMPLATE % (participant_name,
parent_1_name, parent_2_name,
deceased_parent,
self.current_user, kit_email)
try:
send_email(message, subject, sender=kit_email)
alert_message = tl['MESSAGE_SENT']
except:
alert_message = media_locale['EMAIL_ERROR']
self.redirect(media_locale['SITEBASE'] + "/authed/portal/?errmsg=%s" % alert_message)
return
human_survey_id = binascii.hexlify(os.urandom(8))
consent= {'participant_name': participant_name,
'participant_email': participant_email,
'parent_1_name': parent_1_name,
'parent_2_name': parent_2_name,
'is_juvenile': True if is_juvenile == 'on' else False,
'deceased_parent': deceased_parent,
'login_id': ag_login_id,
'survey_id': human_survey_id}
redis.hset(human_survey_id, 'consent', dumps(consent))
redis.expire(human_survey_id, 86400)
self.set_secure_cookie('human_survey_id', human_survey_id)
self.redirect(media_locale['SITEBASE'] + "/authed/survey_main/")