def test_helix5(self):
logfile = os.path.join(self.testfiles_dir, "ncont5.log")
dssplog = os.path.join(self.testfiles_dir, "3RA3.dssp")
c = rio.Rio()
contactData = rio.RioData()
c.parseNcontLog(contactData, logfile=logfile, clean_up=False)
sequence = c.helixFromContacts(contactData.contacts, dssplog)
self.assertEqual("NARLKQEIAALEYEIAAL", sequence)
def test_parse8(self):
logfile = os.path.join(self.testfiles_dir, "ncont8.log")
c = rio.Rio()
contactData = rio.RioData()
c.parseNcontLog(contactData, logfile=logfile, clean_up=False)
c.analyseRio(contactData)
self.assertEqual(contactData.numContacts, 9)
self.assertEqual(contactData.rioInRegister, 0)
self.assertEqual(contactData.rioOoRegister, 0)
self.assertEqual(contactData.rioBackwards, 0)