def test_align_clustal_3(self): # prepare alignment clustal_report = alignment.align_clustal(self.seq_file_3) self.assertIsNot(clustal_report['output'], '') self.assertIsNone(clustal_report['error']) # test aligned output aligned = AlignIO.read(open(self.aln_file_3), 'clustal') aln_length = aligned.get_alignment_length() self.assertIs(aln_length, 50)
def test_parse_clustal_idstars_3(self): alignment.align_clustal(self.seq_file_3) idntot = alignment.parse_clustal_idstars(self.aln_file_3) self.assertIs(idntot, 30)