def test_align_clustal_3(self):
# prepare alignment
clustal_report = alignment.align_clustal(self.seq_file_3)
self.assertIsNot(clustal_report['output'], '')
self.assertIsNone(clustal_report['error'])
# test aligned output
aligned = AlignIO.read(open(self.aln_file_3), 'clustal')
aln_length = aligned.get_alignment_length()
self.assertIs(aln_length, 50)
def test_parse_clustal_idstars_3(self):
alignment.align_clustal(self.seq_file_3)
idntot = alignment.parse_clustal_idstars(self.aln_file_3)
self.assertIs(idntot, 30)
