def test_Read_ExportSppas_Read(self):
tg1 = Antx()
tg1.read(os.path.join(SAMPLES, "Example_with_TGA.antx"))
annotationdata.io.write( os.path.join(SAMPLES, "Example.xra"), tg1 )
tg2 = XRA()
tg2.read(os.path.join(SAMPLES, "Example.xra"))
# Compare annotations of tg1 and tg2
for t1, t2 in zip(tg1, tg2):
self.assertEqual(t1.GetSize(), t2.GetSize())
for a1, a2 in zip(t1, t2):
self.assertEqual(a1.GetLabel().GetValue(), a2.GetLabel().GetValue())
self.assertEqual(a1.GetLocation().GetBegin(), a2.GetLocation().GetBegin())
self.assertEqual(a1.GetLocation().GetEnd(), a2.GetLocation().GetEnd())
os.remove( os.path.join(SAMPLES, "Example.xra") )
def test_ReadWrite(self):
tg1 = XRA()
tg1.read(os.path.join(XRADEF, "sample-1.2.xra"))
annotationdata.io.write(os.path.join(SAMPLES, "sample-1.2.xra"), tg1)
tg2 = XRA()
tg2.read(os.path.join(SAMPLES, "sample-1.2.xra"))
# Compare annotations of tg1 and tg2
for t1, t2 in zip(tg1, tg2):
self.assertEqual(t1.GetSize(), t2.GetSize())
for a1, a2 in zip(t1, t2):
self.assertEqual(a1.GetLabel().GetValue(), a2.GetLabel().GetValue())
if a1.GetLocation().IsPoint():
self.assertEqual(a1.GetLocation().GetPoint(), a2.GetLocation().GetPoint())
else:
self.assertEqual(a1.GetLocation().GetBegin(), a2.GetLocation().GetBegin())
self.assertEqual(a1.GetLocation().GetEnd(), a2.GetLocation().GetEnd())
# Compare media
# Compare hierarchy
# Compare controlled vocabularies
for t1, t2 in zip(tg1, tg2):
ctrl1 = t1.GetCtrlVocab() # a CtrlVocab() instance or None
ctrl2 = t2.GetCtrlVocab() # a CtrlVocab() instance or None
if ctrl1 is None and ctrl2 is None:
continue
self.assertEqual(ctrl1.GetSize(), ctrl2.GetSize())
for entry in ctrl1:
self.assertTrue(ctrl2.Contains(entry.Text))
os.remove(os.path.join(SAMPLES, "sample-1.2.xra"))
def test_Read2(self):
tg2 = XRA()
tg2.read(os.path.join(XRADEF, "sample-1.2.xra"))
def test_Read1(self):
tg1 = XRA()
tg1.read(os.path.join(XRADEF, "sample-1.1.xra"))
