def autofill_scan_info(self):
if self.__check_scripts_dir():
os.chdir('../')
if self.subjects:
self.vars['subjects'] = self.subjects
self.vars['subject_dirs'] = api.parse_dirs(prefixes=self.subjects)
elif self.exclude_dirs:
self.vars['subject_dirs'] = api.parse_dirs(exclude=self.exclude_dirs.extend(self.__generic_exclude))
else:
self.vars['subject_dirs'] = api.parse_dirs(exclude=self.__generic_exclude)
pprint(self.vars['subject_dirs'])
pprint(self.subjects)
api.cni_find_trs_slices(self.vars)
api.define_leadouts(self.vars)
api.set_motion_labels(self.vars)
# running from scripts directory?
run_from_scripts_dir = True
# scripts directory name (OPTIONAL):
scripts_dir = 'reg_output'
vars['scripts_dir'] = scripts_dir
# change directory if neccessary:
if run_from_scripts_dir:
os.chdir('../')
# load in variables:
if subjects:
vars['subject_dirs'] = api.parse_dirs(prefixes=subjects)
elif exclude_dirs:
vars['subject_dirs'] = api.parse_dirs(exclude=exclude_dirs)
vars['raw_funcs'] = raw_funcs
vars['raw_funcs_alt'] = raw_funcs_alternate
vars['raw_anat'] = raw_anat
vars['func_names'] = func_names
vars['dynamic_iti'] = True
# reg reg vars:
vars['log_filename'] = 'ratreg_log'
vars['output_filename'] = 'ratreg3_half'
vars['reg_nifti_name'] = 'actepin_reg.nii'
vars['reg_mask_name'] = 'talairach_mask.nii'
vars['reg_response_tr'] = 3
