def handle_commit_participant(self, req_post):
logging.info("Hit 'commit_participant'")
ref_id = self.ref_id
session = self.session
assert req_post['claim'] == ref_id
claim = session.query(Claim).filter_by(ref_id=ref_id).first()
claim_id = claim.ref_id
self.set_claim_form(claim)
form = ParticipantCreate(req_post)
self.set_participant_form_no_navigator_choices(form)
form.participant_choice.data = "None"
form.participant_choice.choices = [("None", "None")]
form.validate()
if form.errors:
logging.warning("Participant Create Errors: {0}".format(repr(form.errors)))
self.participant_form = form
self.element_form = InactiveElementEdit(None)
self.set_hidden_fields(claim_id, req_post['participant'], NOELEMENT)
else:
form = ParticipantEdit(self.request.POST)
participant = Participant()
new_ref_id = request_uid(self.session)
transaction.commit() # maybe not needed
participant.ref_id = new_ref_id
participant.type = form.type.data
participant.label = form.label.data
participant.publication_taxon = form.publication_taxon.data
participant.publication_anatomy = form.publication_anatomy.data
participant.publication_substrate = form.publication_substrate.data
participant.publication_text = form.publication_text.data
participant.participation_property = expand_curie(form.participation_property.data)
participant.claim_id = ref_id
parts, part_links, _ = get_participants(self.session, ref_id)
parts[participant.ref_id] = participant
self.participant_form = form
property_key = expand_curie(form.participation_property.data)
property_term = session.query(Property).filter_by(ref_id=property_key).one()
part_links[participant.ref_id] = property_term
self.set_participant_form(participant, parts)
self.set_participant_form(participant, parts)
self.element_form = ElementCreateOnly()
self.element_form.expression_type.data = "None"
self.element_form.expression_type.choices = expression_type_choice(session)
session.add(participant)
transaction.commit()
self.update_graph(claim, parts, part_links)
self.set_hidden_fields(claim_id, new_ref_id, NOELEMENT)
logging.info("Exiting commit participant")
def handle_commit_claim(self, req_post):
logging.info("Hit 'commit_claim'")
scf = ClaimCreate(req_post)
self.set_claim_form_choices(scf)
if scf.validate():
scf = ClaimEdit(req_post)
self.set_claim_form_choices(scf)
claim = Claim()
new_ref_id = request_uid(self.session)
claim.ref_id = new_ref_id
claim.publication = expand_curie(scf.publication.data)
if scf.narrative.data == "None":
claim.narrative = None
else:
claim.narrative = expand_curie(scf.narrative.data)
claim.behavior_term = expand_curie(scf.behavior_term.data)
claim.publication_behavior = scf.publication_behavior.data
claim.evidence = expand_curie(scf.evidence.data)
transaction.commit() # make sure the ref_id is committed first
self.session.add(claim)
# commit so HTTPFound 'exception' doesn't drop transaction (TODO - is there a better way)
transaction.commit()
logging.info("About to redirect to {0}".format(generate_route_id(self.request, 'claim_edit', new_ref_id)))
# TODO - can this setup forms and return normally?
# self.set_hidden_fields("test claim", "test participant", "test element")
return HTTPFound(location=generate_route_id(self.request, 'claim_edit', new_ref_id))
else:
session = self.session
old_claim_id = req_post['claim']
old_participant_id = req_post['participant']
old_element_id = req_post['element']
parts, part_links, _ = get_participants(session, old_claim_id)
self.claim_form = scf
participant = parts[old_participant_id]
self.set_participant_form(participant, parts)
element = session.query(ParticipantElement).filter_by(element_id=old_element_id).one()
self.set_element_form(element, element_choices(session, participant))
self.set_hidden_fields(old_claim_id, old_participant_id, old_element_id)
return self.render()
