def test_unescape_all():
# str
url_in = 'http://casu.ast.cam.ac.uk/ag/iphas-dsa%2FSubmitCone?' \
'DSACAT=IDR&DSATAB=Emitters&'
url_out = 'http://casu.ast.cam.ac.uk/ag/iphas-dsa/SubmitCone?' \
'DSACAT=IDR&DSATAB=Emitters&'
assert unescaper.unescape_all(url_in) == url_out
# bytes
url_in = b'http://casu.ast.cam.ac.uk/ag/iphas-dsa%2FSubmitCone?' \
b'DSACAT=IDR&DSATAB=Emitters&'
url_out = b'http://casu.ast.cam.ac.uk/ag/iphas-dsa/SubmitCone?' \
b'DSACAT=IDR&DSATAB=Emitters&'
assert unescaper.unescape_all(url_in) == url_out
def from_registry(cls, registry_url, timeout=60, **kwargs):
"""
Create a database of VO services from VO registry URL.
This is described in detail in :ref:`vo-sec-validator-build-db`,
except for the ``validate_xxx`` keys that are added by the
validator itself.
Parameters
----------
registry_url : str
URL of VO registry that returns a VO Table.
For example, see
``astroquery.vo_conesearch.validator.conf.cs_mstr_list``.
Pedantic is automatically set to `False` for parsing.
timeout : number
Temporarily set ``astropy.utils.data.conf.remote_timeout``
to this value to avoid time out error while reading the
entire registry.
kwargs : dict
Keywords accepted by
:func:`~astropy.utils.data.get_readable_fileobj`.
Returns
-------
db : `VOSDatabase`
Database from given registry.
Raises
------
VOSError
Invalid VO registry.
"""
# Download registry as VO table
with data_conf.set_temp('remote_timeout', timeout):
with get_readable_fileobj(registry_url, **kwargs) as fd:
tab_all = parse_single_table(fd, pedantic=False)
# Registry must have these fields
compulsory_fields = ['res_title', 'access_url']
cat_fields = tab_all.array.dtype.names
for field in compulsory_fields:
if field not in cat_fields: # pragma: no cover
raise VOSError('"{0}" is missing from registry.'.format(field))
title_counter = defaultdict(int)
title_fmt = '{0} {1}'
db = cls.create_empty()
# Each row in the table becomes a catalog
for arr in tab_all.array.data:
cur_cat = {}
cur_key = ''
# Process each field and build the catalog.
# Catalog is completely built before being thrown out
# because codes need less changes should we decide to
# allow duplicate URLs in the future.
for field in cat_fields:
# For primary key, a number needs to be appended to the title
# because registry can have multiple entries with the same
# title but different URLs.
if field == 'res_title':
cur_title = arr['res_title']
title_counter[cur_title] += 1 # Starts with 1
if isinstance(cur_title, bytes): # pragma: py3
cur_key = title_fmt.format(cur_title.decode('utf-8'),
title_counter[cur_title])
else: # pragma: py2
cur_key = title_fmt.format(cur_title,
title_counter[cur_title])
# Special handling of title and access URL,
# otherwise no change.
if field == 'access_url':
s = unescape_all(arr['access_url'])
if isinstance(s, six.binary_type):
s = s.decode('utf-8')
cur_cat['url'] = s
elif field == 'res_title':
cur_cat['title'] = arr[field]
else:
cur_cat[field] = arr[field]
# New field to track duplicate access URLs.
cur_cat['duplicatesIgnored'] = 0
# Add catalog to database, unless duplicate access URL exists.
# In that case, the entry is thrown out and the associated
# counter is updated.
dup_keys = db._url_keys[cur_cat['url']]
if len(dup_keys) < 1:
db.add_catalog(
cur_key, VOSCatalog(cur_cat), allow_duplicate_url=False)
else:
db._catalogs[dup_keys[0]]['duplicatesIgnored'] += 1
warnings.warn(
'{0} is thrown out because it has same access URL as '
'{1}.'.format(cur_key, dup_keys[0]), AstropyUserWarning)
return db
def from_registry(cls, registry_url, timeout=60, **kwargs):
"""
Create a database of VO services from VO registry URL.
This is described in detail in :ref:`vo-sec-validator-build-db`,
except for the ``validate_xxx`` keys that are added by the
validator itself.
Parameters
----------
registry_url : str
URL of VO registry that returns a VO Table.
For example, see
``astroquery.vo_conesearch.validator.conf.cs_mstr_list``.
Pedantic is automatically set to `False` for parsing.
timeout : number
Temporarily set ``astropy.utils.data.conf.remote_timeout``
to this value to avoid time out error while reading the
entire registry.
kwargs : dict
Keywords accepted by
:func:`~astropy.utils.data.get_readable_fileobj`.
Returns
-------
db : `VOSDatabase`
Database from given registry.
Raises
------
VOSError
Invalid VO registry.
"""
# Download registry as VO table
with data_conf.set_temp('remote_timeout', timeout):
with get_readable_fileobj(registry_url, **kwargs) as fd:
tab_all = parse_single_table(fd, pedantic=False)
# Registry must have these fields
compulsory_fields = ['res_title', 'access_url']
cat_fields = tab_all.array.dtype.names
for field in compulsory_fields:
if field not in cat_fields: # pragma: no cover
raise VOSError('"{0}" is missing from registry.'.format(field))
title_counter = defaultdict(int)
title_fmt = '{0} {1}'
db = cls.create_empty()
# Each row in the table becomes a catalog
for arr in tab_all.array.data:
cur_cat = {}
cur_key = ''
# Process each field and build the catalog.
# Catalog is completely built before being thrown out
# because codes need less changes should we decide to
# allow duplicate URLs in the future.
for field in cat_fields:
# For primary key, a number needs to be appended to the title
# because registry can have multiple entries with the same
# title but different URLs.
if field == 'res_title':
cur_title = arr['res_title']
title_counter[cur_title] += 1 # Starts with 1
if isinstance(cur_title, bytes): # pragma: py3
cur_key = title_fmt.format(cur_title.decode('utf-8'),
title_counter[cur_title])
else: # pragma: py2
cur_key = title_fmt.format(cur_title,
title_counter[cur_title])
# Special handling of title and access URL,
# otherwise no change.
if field == 'access_url':
s = unescape_all(arr['access_url'])
if isinstance(s, six.binary_type):
s = s.decode('utf-8')
cur_cat['url'] = s
elif field == 'res_title':
cur_cat['title'] = arr[field]
else:
cur_cat[field] = arr[field]
# New field to track duplicate access URLs.
cur_cat['duplicatesIgnored'] = 0
# Add catalog to database, unless duplicate access URL exists.
# In that case, the entry is thrown out and the associated
# counter is updated.
dup_keys = db._url_keys[cur_cat['url']]
if len(dup_keys) < 1:
db.add_catalog(cur_key,
VOSCatalog(cur_cat),
allow_duplicate_url=False)
else:
db._catalogs[dup_keys[0]]['duplicatesIgnored'] += 1
warnings.warn(
'{0} is thrown out because it has same access URL as '
'{1}.'.format(cur_key, dup_keys[0]), AstropyUserWarning)
return db
def try_query(url,
retries=3,
timeout=60,
get_params=None,
post_data=None,
files=None):
""" A wrapper to the astroquery _request() function allowing for retries
"""
from requests.exceptions import (Timeout, ReadTimeout)
from urllib3.exceptions import ReadTimeoutError
from astroquery.query import BaseQuery
from IPython.core.debugger import Tracer
## For XML entities like "&" that may or may not be handled correctly server-side
from astropy.utils.xml.unescaper import unescape_all
url = unescape_all(url)
"""
## This is necessary for some services, e.g., skyserver.sdss.org has an image service listed with access_url
## http://skyserver.sdss.org/vo/DR2SIAP/SIAP.asmx/getSiapInfo?&FORMAT=image/fits&BANDPASS=ugriz&
try:
## Python 2
import HTMLParser
url=HTMLParser.HTMLParser().unescape(url)
except:
## Python 3
import html
url=html.unescape(html)
"""
bq = BaseQuery()
retry = retries
## By default, do a get with no parameters and assume they are in the URL
if get_params is None and post_data is None:
get_params = {}
#Tracer()()
while retry:
try:
if post_data is not None:
response = bq._request('POST',
url,
data=post_data,
cache=False,
timeout=timeout,
files=files)
else:
response = bq._request('GET',
url,
params=get_params,
cache=False,
timeout=timeout)
retry = retries - 1
except (Timeout, ReadTimeout, ReadTimeoutError, ConnectionError) as e:
retry = retry - 1
if retry == 0:
print("ERROR: Got another timeout; quitting.")
#Tracer()()
#raise e
return response
else:
print("WARNING: Got a timeout; trying again.")
except:
raise
else:
return response