def convolved_array_from_array_and_mask(self, array, mask):
"""
Convolve an array with this Kernel2D
Parameters
----------
image : np.ndarray
An array representing the image the Kernel2D is convolved with.
Returns
-------
convolved_image : np.ndarray
An array representing the image after convolution.
Raises
------
KernelException if either Kernel2D psf dimension is odd
"""
if self.mask.shape[0] % 2 == 0 or self.mask.shape[1] % 2 == 0:
raise exc.KernelException("Kernel2D Kernel2D must be odd")
convolved_array_2d = scipy.signal.convolve2d(array,
self.native,
mode="same")
convolved_array_1d = array_2d_util.array_2d_slim_from(
mask_2d=mask, array_2d_native=convolved_array_2d, sub_size=1)
return array_2d.Array2D(array=convolved_array_1d, mask=mask.mask_sub_1)
def grid_2d_slim_from(grid_2d_native: np.ndarray, mask: np.ndarray,
sub_size: int) -> np.ndarray:
"""
For a native 2D grid and mask of shape [total_y_pixels, total_x_pixels, 2], map the values of all unmasked
pixels to a slimmed grid of shape [total_unmasked_pixels, 2].
The pixel coordinate origin is at the top left corner of the native grid and goes right-wards and downwards, such
that for an grid of shape (3,3) where all pixels are unmasked:
- pixel [0,0] of the 2D grid will correspond to index 0 of the 1D grid.
- pixel [0,1] of the 2D grid will correspond to index 1 of the 1D grid.
- pixel [1,0] of the 2D grid will correspond to index 4 of the 1D grid.
Parameters
----------
grid_2d_native : ndarray
The native grid of (y,x) values which are mapped to the slimmed grid.
mask_2d : np.ndarray
A 2D array of bools, where `False` values mean unmasked and are included in the mapping.
sub_size : int
The size (sub_size x sub_size) of each unmasked pixels sub-array.
Returns
-------
ndarray
A 1D grid of values mapped from the 2D grid with dimensions (total_unmasked_pixels).
"""
grid_1d_slim_y = array_2d_util.array_2d_slim_from(
array_2d_native=grid_2d_native[:, :, 0],
mask_2d=mask,
sub_size=sub_size)
grid_1d_slim_x = array_2d_util.array_2d_slim_from(
array_2d_native=grid_2d_native[:, :, 1],
mask_2d=mask,
sub_size=sub_size)
return np.stack((grid_1d_slim_y, grid_1d_slim_x), axis=-1)
def slim(self):
"""
Return an `Array2D` where the data is stored its `slim` representation, which is an ndarray of shape
[total_unmasked_pixels * sub_size**2].
If it is already stored in its `slim` representation it is returned as it is. If not, it is mapped from
`native` to `slim` and returned as a new `Array2D`.
"""
if len(self.shape) == 1:
return self
sub_array_1d = array_2d_util.array_2d_slim_from(
array_2d_native=self, mask_2d=self.mask, sub_size=self.mask.sub_size
)
return self._new_structure(array=sub_array_1d, mask=self.mask)
def convert_array_2d(array_2d, mask_2d):
"""
Manual array functions take as input a list or ndarray which is to be returned as an Array2D. This function
performs the following and checks and conversions on the input:
1) If the input is a list, convert it to an ndarray.
2) Check that the number of sub-pixels in the array is identical to that of the mask.
3) Map the input ndarray to its `slim` representation.
For an Array2D, `slim` refers to a 1D NumPy array of shape [total_values] and `native` a 2D NumPy array of shape
[total_y_values, total_values].
Parameters
----------
array_2d : np.ndarray or list
The input structure which is converted to an ndarray if it is a list.
mask_2d : Mask2D
The mask of the output Array2D.
"""
array_2d = abstract_array.convert_array(array=array_2d)
if len(array_2d.shape) == 1:
array_2d_slim = abstract_array.convert_array(array=array_2d)
if array_2d_slim.shape[0] != mask_2d.sub_pixels_in_mask:
raise exc.ArrayException(
"The input 1D array does not have the same number of entries as sub-pixels in"
"the mask."
)
return array_2d_slim
if array_2d.shape != mask_2d.sub_shape_native:
raise exc.ArrayException(
"The input array is 2D but not the same dimensions as the sub-mask "
"(e.g. the mask 2D shape multipled by its sub size."
)
sub_array_1d = array_2d_util.array_2d_slim_from(
array_2d_native=array_2d, mask_2d=mask_2d, sub_size=mask_2d.sub_size
)
return sub_array_1d
def return_iterated_array_result(
self, iterated_array: np.ndarray) -> array_2d.Array2D:
"""
Returns the resulting iterated array, by mapping it to 1D and then passing it back as an `Array2D` structure.
Parameters
----------
iterated_array : np.ndarray
Returns
-------
iterated_array
The resulting array computed via iteration.
"""
iterated_array_1d = array_2d_util.array_2d_slim_from(
mask_2d=self.mask, array_2d_native=iterated_array, sub_size=1)
return array_2d.Array2D(array=iterated_array_1d,
mask=self.mask.mask_sub_1)