def commit(self):
"""Store changes on current instance in database.
This method extends the default implementation by publishing the
deposition when 'publication_state' is set to 'published'.
"""
if self.model is None or self.model.json is None:
raise MissingModelError()
# automatically make embargoed records private
if self.get('embargo_date') and self.get('open_access'):
if is_under_embargo(self):
self['open_access'] = False
if 'community' in self:
try:
community = Community.get(self['community'])
except CommunityDoesNotExistError as e:
raise InvalidDepositError('Community {} does not exist.'.format(
self['community'])) from e
workflow = publication_workflows[community.publication_workflow]
workflow(self.model, self)
# publish the deposition if needed
if (self['publication_state'] == PublicationStates.published.name
# check invenio-deposit status so that we do not loop
and self['_deposit']['status'] != PublicationStates.published.name):
# Retrieve previous version in order to reindex it later.
previous_version_pid = None
# Save the previous "last" version for later use
if self.versioning.parent.status == PIDStatus.REDIRECTED and \
self.versioning.has_children:
previous_version_pid = self.versioning.last_child
previous_version_uuid = str(RecordUUIDProvider.get(
previous_version_pid.pid_value
).pid.object_uuid)
super(Deposit, self).publish() # publish() already calls commit()
# Register parent PID if necessary and update redirect
self.versioning.update_redirect()
# Reindex previous version. This is needed in order to update
# the is_last_version flag
if previous_version_pid is not None:
self.indexer.index_by_id(previous_version_uuid)
# save the action for later indexing
if g:
g.deposit_action = 'publish'
else:
super(Deposit, self).commit()
if g:
g.deposit_action = 'update-metadata'
return self
def commit(self):
"""Store changes on current instance in database.
This method extends the default implementation by publishing the
deposition when 'publication_state' is set to 'published'.
"""
if self.model is None or self.model.json is None:
raise MissingModelError()
# automatically make embargoed records private
if self.get('embargo_date') and self.get('open_access'):
if is_under_embargo(self):
self['open_access'] = False
if 'community' in self:
try:
community = Community.get(self['community'])
except CommunityDoesNotExistError as e:
raise InvalidDepositError(
'Community {} does not exist.'.format(
self['community'])) from e
workflow = publication_workflows[community.publication_workflow]
workflow(self.model, self)
# publish the deposition if needed
if (self['publication_state'] == PublicationStates.published.name
# check invenio-deposit status so that we do not loop
and self['_deposit']['status'] !=
PublicationStates.published.name):
super(Deposit, self).publish() # publish() already calls commit()
# save the action for later indexing
if g:
g.deposit_action = 'publish'
else:
super(Deposit, self).commit()
if g:
g.deposit_action = 'update-metadata'
return self
def commit(self):
"""Store changes on current instance in database.
This method extends the default implementation by publishing the
deposition when 'publication_state' is set to 'published'.
"""
if 'external_pids' in self:
deposit_id = self['_deposit']['id']
recid = PersistentIdentifier.query.filter_by(
pid_value=deposit_id).first()
assert recid.status == 'R'
record_bucket = RecordsBuckets.query.filter_by(
record_id=recid.pid_value).first()
bucket = Bucket.query.filter_by(id=record_bucket.bucket_id).first()
object_versions = ObjectVersion.query.filter_by(
bucket_id=bucket.id).all()
key_to_pid = {
ext_pid.get('key'): ext_pid.get('ePIC_PID')
for ext_pid in self['external_pids']
}
# for the existing files
for object_version in object_versions:
if object_version.file is None or \
object_version.file.storage_class != 'B':
continue
# check that they are still in the file pids list or remove
if object_version.key not in key_to_pid:
ObjectVersion.delete(bucket,
object_version.key)
# check that the uri is still the same or update it
elif object_version.file.uri != \
key_to_pid[object_version.key]:
db.session.query(FileInstance).\
filter(FileInstance.id == object_version.file_id).\
update({"uri": key_to_pid[object_version.key]})
create_b2safe_file(self['external_pids'], bucket)
del self['external_pids']
if self.model is None or self.model.json is None:
raise MissingModelError()
# automatically make embargoed records private
if self.get('embargo_date') and self.get('open_access'):
if is_under_embargo(self):
self['open_access'] = False
if 'community' in self:
try:
community = Community.get(self['community'])
except CommunityDoesNotExistError as e:
raise InvalidDepositError('Community {} does not exist.'.format(
self['community'])) from e
workflow = publication_workflows[community.publication_workflow]
workflow(self.model, self)
# publish the deposition if needed
if (self['publication_state'] == PublicationStates.published.name
# check invenio-deposit status so that we do not loop
and self['_deposit']['status'] != PublicationStates.published.name):
# Retrieve previous version in order to reindex it later.
previous_version_pid = None
# Save the previous "last" version for later use
if self.versioning.parent.status == PIDStatus.REDIRECTED and \
self.versioning.has_children:
previous_version_pid = self.versioning.last_child
previous_version_uuid = str(RecordUUIDProvider.get(
previous_version_pid.pid_value
).pid.object_uuid)
external_pids = generate_external_pids(self)
if external_pids:
self['_deposit']['external_pids'] = external_pids
super(Deposit, self).publish() # publish() already calls commit()
# Register parent PID if necessary and update redirect
self.versioning.update_redirect()
# Reindex previous version. This is needed in order to update
# the is_last_version flag
if previous_version_pid is not None:
self.indexer.index_by_id(previous_version_uuid)
# save the action for later indexing
if g:
g.deposit_action = 'publish'
else:
super(Deposit, self).commit()
if g:
g.deposit_action = 'update-metadata'
return self
def commit(self):
"""Store changes on current instance in database.
This method extends the default implementation by publishing the
deposition when 'publication_state' is set to 'published'.
"""
if 'external_pids' in self:
deposit_id = self['_deposit']['id']
recid = PersistentIdentifier.query.filter_by(
pid_value=deposit_id).first()
assert recid.status == 'R'
record_bucket = RecordsBuckets.query.filter_by(
record_id=recid.pid_value).first()
bucket = Bucket.query.filter_by(id=record_bucket.bucket_id).first()
object_versions = ObjectVersion.query.filter_by(
bucket_id=bucket.id).all()
key_to_pid = {
ext_pid.get('key'): ext_pid.get('ePIC_PID')
for ext_pid in self['external_pids']
}
# for the existing files
for object_version in object_versions:
if object_version.file is None or \
object_version.file.storage_class != 'B':
continue
# check that they are still in the file pids list or remove
if object_version.key not in key_to_pid:
ObjectVersion.delete(bucket,
object_version.key)
# check that the uri is still the same or update it
elif object_version.file.uri != \
key_to_pid[object_version.key]:
db.session.query(FileInstance).\
filter(FileInstance.id == object_version.file_id).\
update({"uri": key_to_pid[object_version.key]})
create_b2safe_file(self['external_pids'], bucket)
del self['external_pids']
if self.model is None or self.model.json is None:
raise MissingModelError()
# automatically make embargoed records private
if self.get('embargo_date') and self.get('open_access'):
if is_under_embargo(self):
self['open_access'] = False
if 'community' in self:
try:
community = Community.get(self['community'])
except CommunityDoesNotExistError as e:
raise InvalidDepositError('Community {} does not exist.'.format(
self['community'])) from e
workflow = publication_workflows[community.publication_workflow]
workflow(self.model, self)
# publish the deposition if needed
if (self['publication_state'] == PublicationStates.published.name
# check invenio-deposit status so that we do not loop
and self['_deposit']['status'] != PublicationStates.published.name):
# Retrieve previous version in order to reindex it later.
previous_version_pid = None
# Save the previous "last" version for later use
if self.versioning.parent.status == PIDStatus.REDIRECTED and \
self.versioning.has_children:
previous_version_pid = self.versioning.last_child
previous_version_uuid = str(RecordUUIDProvider.get(
previous_version_pid.pid_value
).pid.object_uuid)
external_pids = generate_external_pids(self)
if external_pids:
self['_deposit']['external_pids'] = external_pids
super(Deposit, self).publish() # publish() already calls commit()
# Register parent PID if necessary and update redirect
self.versioning.update_redirect()
# Reindex previous version. This is needed in order to update
# the is_last_version flag
if previous_version_pid is not None:
self.indexer.index_by_id(previous_version_uuid)
# save the action for later indexing
if g:
g.deposit_action = 'publish'
else:
super(Deposit, self).commit()
if g:
g.deposit_action = 'update-metadata'
return self