Python validate_report_metadata Examples

Example #1

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def test_basic(self):
     cmd = _to_cmd(self.ALIGNMENTS, self.report_json)
     rcode = run_backticks(cmd)
     self.assertEqual(rcode, 0)
     with open(self.report_json, 'r') as f:
         s = json.load(f)
         log.info("JsonReport: ")
         log.info(pprint.pformat(s, indent=4))
     report = dict_to_report(s)
     self.assertIsNotNone(report)
     self.assertEqual(len(report.tables), 1)
     log.info(str(report.tables[0]))
     validate_report_metadata(self, report, meta_rpt)

Example #2

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def test_basic(self):
     cmd = _to_cmd(self.ALIGNMENTS, self.report_json)
     rcode = run_backticks(cmd)
     self.assertEqual(rcode, 0)
     with open(self.report_json, 'r') as f:
         s = json.load(f)
         log.info("JsonReport: ")
         log.info(pprint.pformat(s, indent=4))
     report = dict_to_report(s)
     self.assertIsNotNone(report)
     self.assertEqual(len(report.tables), 1)
     log.info(str(report.tables[0]))
     validate_report_metadata(self, report, meta_rpt)

Example #3

File: test_pbreports_report_mapping_stats.py Project: MShaffar19/pbreports

 def run_after(self, rtc, output_dir):
     r = load_report_from_json(rtc.task.output_files[0])
     with ConsensusAlignmentSet(self.INPUT_FILES[0]) as ds:
         self.assertEqual(r._dataset_uuids, [ds.uuid])
         self.assertEqual(len(r.plotGroups), 4)
     validate_report_metadata(self, r, mapping_stats_ccs.ccs_spec)

Example #4

File: test_pbreports_report_mapping_stats.py Project: MShaffar19/pbreports

 def run_after(self, rtc, output_dir):
     r = load_report_from_json(rtc.task.output_files[0])
     with AlignmentSet(self.INPUT_FILES[0]) as ds:
         self.assertEqual(r._dataset_uuids, [ds.uuid])
     validate_report_metadata(self, r, spec)

Example #5

File: test_pbreports_report_mapping_stats.py Project: MShaffar19/pbreports

 def test_report_metadata(self):
     validate_report_metadata(self, self.report, mapping_stats_ccs.ccs_spec)

Example #6

File: test_pbreports_report_mapping_stats.py Project: MShaffar19/pbreports

 def test_report_metadata(self):
     validate_report_metadata(self, self.report, spec)

Example #7

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def test_report_metadata(self):
     validate_report_metadata(self, self.report, meta_rpt)

Example #8

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def run_after(self, rtc, output_dir):
     r = load_report_from_json(rtc.task.output_files[0])
     with ConsensusAlignmentSet(self.INPUT_FILES[0]) as ds:
         self.assertEqual(r._dataset_uuids, [ds.uuid])
         self.assertEqual(len(r.plotGroups), 4)
     validate_report_metadata(self, r, mapping_stats_ccs.meta_rpt)

Example #9

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def run_after(self, rtc, output_dir):
     r = load_report_from_json(rtc.task.output_files[0])
     with AlignmentSet(self.INPUT_FILES[0]) as ds:
         self.assertEqual(r._dataset_uuids, [ds.uuid])
     validate_report_metadata(self, r, meta_rpt)

Example #10

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def test_report_metadata(self):
     validate_report_metadata(self, self.report, mapping_stats_ccs.meta_rpt)

Example #11

File: test_pbreports_report_mapping_stats.py Project: mdsmith/pbreports

 def test_report_metadata(self):
     validate_report_metadata(self, self.report, meta_rpt)

Example #12

File: test_pbreports_report_mapping_stats.py Project: PacificBiosciences/pbreports

 def test_report_metadata(self):
     validate_report_metadata(self, self.report, spec)