def __init__(self, args, parent=None):
"""
This initialization does a lot of stuff. :)
* State variables are set up
* Views are created and tied to UI parts (e.g. Docks)
* Logging is set up
* Services (StatusBar, Data, ...) are started
* Necessary slots are connected
"""
super(BioParkinController, self).__init__(parent)
#locale.setlocale(locale.LC_ALL, 'de_DE')
# locale.setlocale(locale.LC_ALL, 'deu_deu')
self.startTime = time.localtime()
# set file logger
self.rotatingFileHandler = logging.handlers.RotatingFileHandler(_LOG_FILENAME,
maxBytes=1000000,
backupCount=5)
self.rotatingFileHandler.setFormatter(logging.Formatter("%(asctime)s | %(levelname)s | %(message)s"))
self.logger = logging.getLogger() #gets root logger
self.logger.addHandler(self.rotatingFileHandler)
# Status bar logger
self.statusBarLoggingHandler = StatusBarLoggingHandler()
self.statusBarLoggingHandler.setLevel(logging.INFO) # only log on info level
self.logger.addHandler(self.statusBarLoggingHandler)
# set GUI logger
# self.loggingView = QtLoggingView(self)
# loggingHandler = QtLoggingHandler(self.loggingView)
# loggingHandler.setLevel(logging.INFO)
# self.logger.addHandler(loggingHandler)
# filling log dock area (was set up in QtDesigner)
# self._logDockWidget.setWidget(self.loggingView)
# self._logDockWidget.hide()
# parse command line arguments
parser = OptionParser()
parser.add_option("-d", "--debug",
action="store_true", dest=OPTION_DEBUG, default=False,
help="Include debugging information in console and file log")
self.options, args = parser.parse_args()
self.optionsService = OptionsService()
self.optionsService.setDebug(self.options.debug)
# set logging options
if self.options.debug:
self.logger.setLevel(logging.DEBUG)
self.rotatingFileHandler.setLevel(logging.DEBUG)
logging.info("Debug logging active.")
else:
self.logger.setLevel(logging.INFO)
self.rotatingFileHandler.setLevel(logging.INFO)
logging.info("Debug logging not active.")
logging.debug("Starting BioPARKIN... %s" % self.startTime)
##### LOGGING #####
logging.info("BioPARKIN started (version %s)" % BioParkinController.__version__)
logging.info("Command line arguments: %s" % args)
logging.info("Python version: %s" % sys.version)
# logging.info("SIP version: %s" % sip.SIP_VERSION_STR)
#logging.info("PyQt version: %s" % PYQT_VERSION_STR)
logging.info("PySide version: %s" % PySide.__version__)
logging.info("libSBML version: %s" % LIBSBML_VERSION_STRING)
logging.info("Matplotlib version: %s" % matplotlib.__version__)
# logging.info("NetworkX version: %s" % networkx.__version__)
logging.info("Python Image Library version: %s" % Image.VERSION)
self.setupUi(self)
self._mdiArea.hide()
self.setWindowTitle("BioPARKIN v%s" % BioParkinController.__version__)
# restore previous settings
settings = QSettings()
try:
self.recentFiles = settings.value("RecentFiles", [])
# handles the case if only one file is in the "list" in Linux (it's retrieved as unicode string in this case)
if type(self.recentFiles) is str or type(self.recentFiles) is unicode:
self.recentFiles = [self.recentFiles]
logging.info("Recently opened files: %s" % self.recentFiles)
except:
logging.warning("Can't access list of recently opened files. Resetting the list.")
self.recentFiles = []
self.updateFileMenu()
self.aboutDialog = None
geometry = settings.value("Geometry")
if geometry:
self.restoreGeometry(geometry)
state = settings.value("MainWindow/State")
if state:
self.restoreState(state)
self.ModelControllers = {}
# self.SubWindowToModelControllers = {}
# self.NetworkWindowCount = 0
# self.ActiveNetworkWindow = None
self.ActiveModelController = None
# self.networkSubWindows = {}
self.integrator = None
self.odeViewer = None
self.ModelView = ModelView(self.masterDetailSplitter, self)
self.ModelTreeView = SBMLEntityWidget(self.masterDetailSplitter)
self.EntityTableView = EntityTableView(self.masterDetailSplitter)
# self.masterDetailSplitter.widget(0).destroy()
# logging.debug("1st Child of Splitter: %s" % self.masterDetailSplitter.widget(0))
self.mainWindowViews = [self.ModelTreeView, self.EntityTableView] #used to iterate over Views
# set up Data Service and Data Viewer
datahandling.parkinController = self
self.dataService = DataService()
# debugging#############
BASE_PATH = reduce(lambda l, r: l + os.path.sep + r,
os.path.dirname(os.path.realpath(__file__)).split(os.path.sep)[:-1])
#BASE_PATH = os.path.dirname(os.path.realpath(__file__))
# add ../../templates (relative to the file (!) and not to the CWD)
dataPath = os.path.join(BASE_PATH, "data")
#######################
self.SimulationWorkbenchController = SimulationWorkbenchController(parent=None, parkinController=self)
self.mainTabWidget.addTab(self.SimulationWorkbenchController, "Workbench")
# hook up status bar with progress service (that threads can connect to)
self.statusBarService = StatusBarService(self.statusBar()) # first time, service is instantiated => give statusBar reference!
# self.statusBarService.setStatusBar(self.statusBar())
self.progressBarService = ProgressBarService(self, self.statusBarService)
self.statusBarLoggingHandler.setStatusBar(self.statusBarService)
self.warningsService = WarningService.getInstance()
self.warningsDialog = WarningsDialog(self, self.actionShow_Warnings, self.warningsService)
# register signals
# self.connect(self._mdiArea, SIGNAL("subWindowActivated(QMdiSubWindow*)"), self.on_networkwindow_raised)
self.activeModelChanged.connect(self.on_activeModelChanged)
# self.activeModelChanged.connect(self.selectNetworkView) # put into own method -> easier to put in own class later
self.modelClosed.connect(self.on_modelClosed)
# self.modelClosed.connect(self.closeNetworkWindow) # put into own method -> easier to put in own class later
self.menuFile.aboutToShow.connect(self.updateFileMenu)
# for debugging
self.dummyThread = None
try: # try to set correct taskbar icon in Windows 7
myappid = 'ZIB.BioPARKIN' # arbitrary string
ctypes.windll.shell32.SetCurrentProcessExplicitAppUserModelID(myappid)
except:
pass
