def test_species_markup_func(self):
eCo = Species.retrieve_or_create(
self.session,
{
"object": "taxon",
"ht-rank": "genus",
"ht-epithet": u"Maxillaria",
"rank": "species",
"epithet": u"variabilis",
},
create=False,
update=False,
)
model = Species.retrieve_or_create(
self.session,
{"object": "taxon", "ht-rank": "genus", "ht-epithet": u"Laelia", "rank": "species", "epithet": u"lobata"},
create=False,
update=False,
)
first, second = species_markup_func(eCo)
self.assertEquals(first, u"<i>Maxillaria</i> <i>variabilis</i>")
self.assertEquals(second, u"Orchidaceae -- SomeName, SomeName 2")
first, second = species_markup_func(model)
self.assertEquals(first, u"<i>Laelia</i> <i>lobata</i>")
self.assertEquals(second, u"Orchidaceae")
def test(self):
obj = Genus.retrieve_or_create(
self.session, {"object": "taxon", "rank": "genus", "epithet": u"Maxillaria"}, create=False, update=False
)
self.assertEquals(obj.cites, u"II")
obj = Genus.retrieve_or_create(
self.session, {"object": "taxon", "rank": "genus", "epithet": u"Laelia"}, create=False, update=False
)
self.assertEquals(obj.cites, u"II")
obj = Species.retrieve_or_create(
self.session,
{
"object": "taxon",
"ht-rank": "genus",
"ht-epithet": u"Paphiopedilum",
"rank": "species",
"epithet": u"adductum",
},
create=False,
update=False,
)
self.assertEquals(obj.cites, u"I")
obj = Species.retrieve_or_create(
self.session,
{"object": "taxon", "ht-rank": "genus", "ht-epithet": u"Laelia", "rank": "species", "epithet": u"lobata"},
create=False,
update=False,
)
self.assertEquals(obj.cites, u"I")
obj = Species.retrieve_or_create(
self.session,
{
"object": "taxon",
"ht-rank": "genus",
"ht-epithet": u"Laelia",
"rank": "species",
"epithet": u"grandiflora",
},
create=False,
update=False,
)
self.assertEquals(obj.cites, u"II")
def test_cantinsertsametwice(self):
"while binomial name in view matches database item, warn user"
raise SkipTest("Not Implemented") # presenter uses view internals
from species_editor import SpeciesEditorPresenter
model = Species.retrieve_or_create(
self.session,
{"object": "taxon", "ht-rank": "genus", "ht-epithet": u"Laelia", "rank": "species", "epithet": u"lobata"},
create=False,
update=False,
)
presenter = SpeciesEditorPresenter(model, MockView())
presenter.on_text_entry_changed("sp_species_entry", "grandiflora")
def test(self):
obj = Species.retrieve_or_create(
self.session,
{
"object": "taxon",
"ht-rank": "genus",
"ht-epithet": u"Encyclia",
"rank": "species",
"epithet": u"fragrans",
},
create=False,
update=False,
)
self.assertEquals(obj.conservation, u"LC")
def test_canreeditobject(self):
species = Species.retrieve_or_create(
self.session,
{
"object": "taxon",
"ht-rank": "genus",
"ht-epithet": u"Paphiopedilum",
"rank": "species",
"epithet": u"adductum",
},
create=False,
update=False,
)
presenter = GenericModelViewPresenterEditor(species, MockView())
species.author = u"wrong"
presenter.commit_changes()
species.author = u"Asher"
presenter.commit_changes()
def test_default_vernacular_name(self):
"""
Test the Species.default_vernacular_name property
"""
family = Family(family=u"family")
genus = Genus(family=family, genus=u"genus")
sp = Species(genus=genus, sp=u"sp")
vn = VernacularName(name=u"name")
sp.vernacular_names.append(vn)
self.session.add_all([family, genus, sp, vn])
self.session.commit()
# test that setting the default vernacular names
default = VernacularName(name=u"default")
sp.default_vernacular_name = default
self.session.commit()
self.assert_(vn in sp.vernacular_names)
self.assert_(sp.default_vernacular_name == default)
# test that set_attr work on default vernacular name
default = VernacularName(name=u"default")
setattr(sp, "default_vernacular_name", default)
self.session.commit()
self.assert_(vn in sp.vernacular_names)
self.assert_(sp.default_vernacular_name == default)
# test that if you set the default_vernacular_name on a
# species then it automatically adds it to vernacular_names
default = VernacularName(name=u"default")
sp.default_vernacular_name = default
self.session.commit()
self.assert_(vn in sp.vernacular_names)
self.assert_(sp.default_vernacular_name == default)
# test that removing a vernacular name removes it from
# default_vernacular_name, this test also effectively tests VNList
dvid = sp._default_vernacular_name.id
sp.vernacular_names.remove(default)
self.session.commit()
self.assertEquals(sp.default_vernacular_name, None)
q = self.session.query(DefaultVernacularName)
self.assertRaises(NoResultFound, q.filter_by(species_id=sp.id).one)
self.assertRaises(NoResultFound, q.filter_by(id=dvid).one)
# test that setting default_vernacular_name to None
# removes the name properly and deletes any orphaned objects
sp.vernacular_names.append(vn)
sp.default_vernacular_name = vn
self.session.commit()
dvid = sp._default_vernacular_name.id
sp.default_vernacular_name = None
self.session.commit()
q = self.session.query(DefaultVernacularName)
self.assertRaises(NoResultFound, q.filter_by(species_id=sp.id).one)
self.assertRaises(NoResultFound, q.filter_by(id=dvid).one)
# test that calling __del__ on a default vernacular name removes it
sp.default_vernacular_name = vn
self.session.commit()
dvid = sp._default_vernacular_name.id
del sp.default_vernacular_name
self.session.commit()
self.assertEquals(sp.default_vernacular_name, None)
q = self.session.query(DefaultVernacularName)
self.assertRaises(NoResultFound, q.filter_by(species_id=sp.id).one)
self.assertRaises(NoResultFound, q.filter_by(id=dvid).one)
# test for regression in bug Launchpad #123286
vn1 = VernacularName(name=u"vn1")
vn2 = VernacularName(name=u"vn2")
sp.default_vernacular_name = vn1
sp.default_vernacular_name = vn2
self.session.commit()
def get_sp_str(id, **kwargs):
return Species.str(self.session.query(Species).get(id), **kwargs)
def get_FullScientificNameString(self, authors=True):
s = Species.str(self.species, authors=authors, markup=False)
return utils.xml_safe(s)
def get_FullScientificNameString(self, authors=True):
s = Species.str(self.species, authors=authors, markup=False)
return xml_safe(s)
