Example #1
0
def mutual_information(state, col_1, col_2, N=1000):
    view_1 = state.Zv[col_1]
    view_2 = state.Zv[col_2]

    if view_1 != view_2:
        print("mutual_information: not in same view: MI = 0.0")
        return 0.0

    log_crp = su.get_cluster_crps(state, view_1)
    K = len(log_crp)

    clusters_col_1 = su.create_cluster_set(state, col_1)
    clusters_col_2 = su.create_cluster_set(state, col_2)

    MI = 0

    Px = numpy.zeros(K)
    Py = numpy.zeros(K)
    Pxy = numpy.zeros(K)

    for i in range(N):
        c = utils.log_pflip(log_crp)
        x = clusters_col_1[c].predictive_draw()
        y = clusters_col_2[c].predictive_draw()
        for k in range(K):
            Px[k] = clusters_col_1[k].predictive_logp(x)
            Py[k] = clusters_col_2[k].predictive_logp(y)
            Pxy[k] = Px[k] + Py[k] + log_crp[k]
            Px[k] += log_crp[k]
            Py[k] += log_crp[k]

        PX = logsumexp(Px)
        PY = logsumexp(Py)
        PXY = logsumexp(Pxy)

        MI += (PXY - PX - PY)

    MI /= float(N)

    if MI < 0.0:
        print("mutual_information: MI < 0 (%f)" % MI)
        MI = 0.0

    return MI
Example #2
0
def mutual_information(state, col_1, col_2, N=1000):
	view_1 = state.Zv[col_1]
	view_2 = state.Zv[col_2]

	if view_1 != view_2:
		print("mutual_information: not in same view: MI = 0.0")
		return 0.0

	log_crp = su.get_cluster_crps(state, view_1)
	K = len(log_crp)

	clusters_col_1 = su.create_cluster_set(state, col_1)
	clusters_col_2 = su.create_cluster_set(state, col_2)

	MI = 0

	Px = numpy.zeros(K)
	Py = numpy.zeros(K)
	Pxy = numpy.zeros(K)

	for i in range(N):
		c = utils.log_pflip(log_crp)
		x = clusters_col_1[c].predictive_draw()
		y = clusters_col_2[c].predictive_draw()
		for k in range(K):
			Px[k] = clusters_col_1[k].predictive_logp(x)
			Py[k] = clusters_col_2[k].predictive_logp(y)
			Pxy[k] = Px[k]+Py[k]+log_crp[k]
			Px[k] += log_crp[k]
			Py[k] += log_crp[k]

		PX = logsumexp(Px)
		PY = logsumexp(Py)
		PXY = logsumexp(Pxy)

		MI += (PXY-PX-PY)
	
	MI /= float(N)

	if MI < 0.0:
		print("mutual_information: MI < 0 (%f)" % MI)
		MI = 0.0

	return MI
Example #3
0
def test_predictive_draw(state, N=None):
    import pylab
    if state.n_cols != 2:
        print("state must have exactly 2 columns")
        return

    if N is None:
        N = state.n_rows

    view_1 = state.Zv[0]
    view_2 = state.Zv[1]

    if view_1 != view_2:
        print("Columns not in same view")
        return

    log_crp = su.get_cluster_crps(state, 0)
    K = len(log_crp)

    X = numpy.zeros(N)
    Y = numpy.zeros(N)

    clusters_col_1 = su.create_cluster_set(state, 0)
    clusters_col_2 = su.create_cluster_set(state, 1)

    for i in range(N):
        c = utils.log_pflip(log_crp)
        x = clusters_col_1[c].predictive_draw()
        y = clusters_col_2[c].predictive_draw()

        X[i] = x
        Y[i] = y

    pylab.scatter(X, Y, color='red', label='inferred')
    pylab.scatter(state.dims[0].X,
                  state.dims[1].X,
                  color='blue',
                  label='actual')
    pylab.show()
Example #4
0
def test_predictive_draw(state, N=None):
	import pylab
	if state.n_cols != 2:
		print("state must have exactly 2 columns")
		return

	if N is None:
		N = state.n_rows

	view_1 = state.Zv[0]
	view_2 = state.Zv[1]

	if view_1 != view_2:
		print("Columns not in same view")
		return

	log_crp = su.get_cluster_crps(state, 0)
	K = len(log_crp)

	X = numpy.zeros(N)
	Y = numpy.zeros(N)

	clusters_col_1 = su.create_cluster_set(state, 0)
	clusters_col_2 = su.create_cluster_set(state, 1)

	for i in range(N):
		c = utils.log_pflip(log_crp)
		x = clusters_col_1[c].predictive_draw()
		y = clusters_col_2[c].predictive_draw()

		X[i] = x
		Y[i] = y

	pylab.scatter(X,Y, color='red', label='inferred')
	pylab.scatter(state.dims[0].X, state.dims[1].X, color='blue', label='actual')
	pylab.show()