def qc_to_rec(samples):
"""CWL: Convert a set of input samples into records for parallelization.
"""
samples = [utils.to_single_data(x) for x in samples]
samples = cwlutils.assign_complex_to_samples(samples)
to_analyze, extras = _split_samples_by_qc(samples)
recs = cwlutils.samples_to_records([utils.to_single_data(x) for x in to_analyze + extras])
return [[x] for x in recs]
def qc_to_rec(samples):
"""CWL: Convert a set of input samples into records for parallelization.
"""
samples = [utils.to_single_data(x) for x in samples]
samples = cwlutils.assign_complex_to_samples(samples)
to_analyze, extras = _split_samples_by_qc(samples)
recs = cwlutils.samples_to_records([utils.to_single_data(x) for x in to_analyze + extras])
return [[x] for x in recs]
def batch_for_sv(samples):
"""Prepare a set of samples for parallel structural variant calling.
CWL input target -- groups samples into batches and structural variant
callers for parallel processing.
"""
samples = cwlutils.assign_complex_to_samples(samples)
to_process, extras, background = _batch_split_by_sv(samples, "standard")
out = [cwlutils.samples_to_records(xs) for xs in to_process.values()] + extras
return out
def batch_for_sv(samples):
"""Prepare a set of samples for parallel structural variant calling.
CWL input target -- groups samples into batches and structural variant
callers for parallel processing.
"""
samples = cwlutils.assign_complex_to_samples(samples)
to_process, extras, background = _batch_split_by_sv(samples, "standard")
out = [cwlutils.samples_to_records(xs) for xs in to_process.values()] + extras
return out
