def test_splitvcf(self):
in_file = self.config["input_split"]
correct = self.config["correct_split"]
out_files = split_vcf(in_file, self.config)
self.assertTrue(all(map(filecmp.cmp, out_files, correct)))
# cleanup
data_dir = os.path.dirname(in_file)
shutil.rmtree(os.path.join(data_dir, "split"))
os.remove(in_file + ".gz")
os.remove(in_file + ".gz.tbi")
def test_splitvcf(self):
in_file = self.config["input_split"]
correct = self.config["correct_split"]
out_files = split_vcf(in_file, self.config)
self.assertTrue(all(map(filecmp.cmp, out_files, correct)))
# cleanup
data_dir = os.path.dirname(in_file)
shutil.rmtree(os.path.join(data_dir, "split"))
os.remove(in_file + ".gz")
os.remove(in_file + ".gz.tbi")
def test_splitvcf(self):
data_subdir = os.path.join(self.data_dir, "split_vcf")
config_file = os.path.join(data_subdir, "test_split_vcf.yaml")
with open(config_file) as in_handle:
config = yaml.load(in_handle)
in_file = config["input_split"]
correct_files = config["correct_split"]
out_files = split_vcf(in_file, config)
self.assertTrue(all(map(filecmp.cmp, out_files, correct_files)))
# cleanup
data_dir = os.path.dirname(in_file)
shutil.rmtree(os.path.join(data_dir, "split"))
os.remove(in_file + ".gz")
os.remove(in_file + ".gz.tbi")
