def set_header(self,**kws):
"""
Set items in the [Header] section
Supply keyword=value pairs to set the values for items
in the sample sheet header
For example:
>>> s.set_header(Date="08/19/2016",Assay="Nextera XT")
"""
new_header = OrderedDictionary()
items = ('IEMFileVersion',
'Date',
'Workflow',
'Application',
'Assay',
'Description',
'Chemistry')
for item in items:
if item in kws:
new_header[item] = kws[item]
elif item in self._header:
new_header[item] = self._header[item]
for item in kws:
if item not in items:
new_header[item] = kws[item]
self._header = new_header
def set_settings(self, **kws):
"""
Set items in the [Settings] section
Supply keyword=value pairs to set the values for items
in the sample sheet header
For example:
>>> s.set_settings(Adapter="AGATCGG",AdapterRead2="")
"""
new_settings = OrderedDictionary()
items = ('ReverseComplement', 'Adapter', 'AdapterRead2')
for item in items:
if item in kws:
new_settings[item] = kws[item]
elif item in self._settings:
new_settings[item] = self._settings[item]
self._settings = new_settings