def test_insert_tab_data_line(self):
"""Insert a TabDataLine into a TabFile
"""
tabfile = TabFile('test',self.fp)
self.assertEqual(len(tabfile),3)
tabdataline = TabDataLine('chr1\t10000\t20000\t+')
line = tabfile.insert(2,tabdataline=tabdataline)
self.assertEqual(len(tabfile),4)
# Check new line is correct
self.assertTrue(line is tabdataline)
def test_insert_empty_line(self):
"""Insert a blank line into a TabFile
"""
tabfile = TabFile('test',self.fp)
self.assertEqual(len(tabfile),3)
line = tabfile.insert(2)
self.assertEqual(len(tabfile),4)
# Check new line is empty
for i in range(len(line)):
self.assertTrue(str(line[i]) == '')
def test_insert_line_with_tab_data(self):
"""Insert line into a TabFile populated from tabbed data
"""
data = 'chr1\t10000\t20000\t+'
tabfile = TabFile('test',self.fp)
self.assertEqual(len(tabfile),3)
line = tabfile.insert(2,tabdata=data)
self.assertEqual(len(tabfile),4)
# Check new line is correct
self.assertTrue(str(line) == data)
def test_insert_tab_data_line(self):
"""Insert a TabDataLine into a TabFile
"""
tabfile = TabFile('test', self.fp)
self.assertEqual(len(tabfile), 3)
tabdataline = TabDataLine('chr1\t10000\t20000\t+')
line = tabfile.insert(2, tabdataline=tabdataline)
self.assertEqual(len(tabfile), 4)
# Check new line is correct
self.assertTrue(line is tabdataline)
def test_insert_line_with_tab_data(self):
"""Insert line into a TabFile populated from tabbed data
"""
data = 'chr1\t10000\t20000\t+'
tabfile = TabFile('test', self.fp)
self.assertEqual(len(tabfile), 3)
line = tabfile.insert(2, tabdata=data)
self.assertEqual(len(tabfile), 4)
# Check new line is correct
self.assertTrue(str(line) == data)
def test_insert_empty_line(self):
"""Insert a blank line into a TabFile
"""
tabfile = TabFile('test', self.fp)
self.assertEqual(len(tabfile), 3)
line = tabfile.insert(2)
self.assertEqual(len(tabfile), 4)
# Check new line is empty
for i in range(len(line)):
self.assertTrue(str(line[i]) == '')
def test_insert_line_with_data(self):
"""Insert line into a TabFile populated with data
"""
data = ['chr1',678,901,6.1]
tabfile = TabFile('test',self.fp)
self.assertEqual(len(tabfile),3)
line = tabfile.insert(2,data=data)
self.assertEqual(len(tabfile),4)
# Check new line is correct
for i in range(len(data)):
self.assertTrue(line[i] == data[i])
def test_insert_line_with_data(self):
"""Insert line into a TabFile populated with data
"""
data = ['chr1', 678, 901, 6.1]
tabfile = TabFile('test', self.fp)
self.assertEqual(len(tabfile), 3)
line = tabfile.insert(2, data=data)
self.assertEqual(len(tabfile), 4)
# Check new line is correct
for i in range(len(data)):
self.assertTrue(line[i] == data[i])
