async def test_ga4gh_info(self):
"""Test info metadata response."""
result = await ga4gh_info("localhost")
# if it is none no error occurred
self.assertEqual(
jsonschema.validate(json.loads(json.dumps(result)),
load_schema("service-info")), None)
async def test_beacon_info(self, db_metadata):
"""Test info metadata response."""
db_metadata.return_value = [mock_dataset_metadata]
pool = asynctest.CoroutineMock()
result = await beacon_info('localhost', pool)
# if it is none no error occurred
self.assertEqual(jsonschema.validate(json.loads(
json.dumps(result)), load_schema('info')), None)
db_metadata.assert_called()
async def test_beacon_query_bnd(self, fetch_req_datasets, data_find):
"""Test query data response."""
data_find.return_value = mock_data
fetch_req_datasets.return_value = mock_controlled
pool = asynctest.CoroutineMock()
request = {"assemblyId": "GRCh38",
"referenceName": "MT",
"start": 0,
"referenceBases": "C",
"mateName": "1",
"includeDatasetResponses": "ALL",
"datasetIds": []}
params = pool, 'POST', request, {'bona_fide_status': True, 'permissions': None}, "localhost"
result = await query_request_handler(params)
self.assertEqual(jsonschema.validate(json.loads(
json.dumps(result)), load_schema('response')), None)
data_find.assert_called()
async def test_beacon_query(self, fetch_req_datasets, data_find):
"""Test query data response."""
data_find.return_value = mock_data
fetch_req_datasets.return_value = mock_controlled
pool = unittest.mock.AsyncMock()
request = {
"assemblyId": "GRCh38",
"referenceName": "MT",
"start": 0,
"referenceBases": "C",
"alternateBases": "T",
"includeDatasetResponses": "ALL",
"datasetIds": [],
}
params = pool, "POST", request, {
"bona_fide_status": True,
"permissions": None
}, "localhost"
result = await query_request_handler(params)
self.assertEqual(
jsonschema.validate(json.loads(json.dumps(result)),
load_schema("response")), None)
data_find.assert_called()