def test_Parser(self):
"""test the functioning of the parser"""
parser = XMLParser()
if parser.isAvailable():
source = open(setup.MEDLINE_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
# are there enough entries?
self.failUnless(len(entries) == 4)
# are there the right number of authors?
self.failUnless(len(entries.author_last_names()) == 13)
# test individual name parsings:
# lastname, one initial
this_entry = entries.entryByTitle("Molecular genetic evidence for parthenogenesis in the Burmese python, Python molurus bivittatus.")
expected_author = {"firstname": "E.", "middlename": "","lastname": "Bruins"}
self.failUnless(this_entry.authorIsPresent(expected_author), "author: %s is not listed" % expected_author)
# lastname, more than one initial
expected_author = {"firstname": "T.", "middlename": "V. M.","lastname": "Groot"}
self.failUnless(this_entry.authorIsPresent(expected_author), "author: %s is not listed" % expected_author)
# lastname, firstname, middle initial
this_entry = entries.entryByTitle("Pharmacokinetics and tissue concentrations of azithromycin in ball pythons (Python regius).")
expected_author = {"firstname": "Robert", "middlename": "P.","lastname": "Hunter"}
self.failUnless(this_entry.authorIsPresent(expected_author), "author: %s is not listed" % expected_author)
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print ("-" * 20) + "\n"
def test_FormatDetection(self):
parser = XMLParser()
s1 = open(setup.MEDLINE_TEST_XML, 'r').read()
s2 = open(setup.MEDLINE_TEST_BIB, 'r').read()
s3 = open(setup.MEDLINE_TEST_MED, 'r').read()
self.failUnless(parser.checkFormat(s1), 'XML Parser failed to detect XML(MODS) format')
self.failIf(parser.checkFormat(s2), 'XML Parser incorrectly detected Bibtex format as XML(MODS)')
self.failIf(parser.checkFormat(s3), 'XML Parser incorrectly detected Medline format as XML(MODS)')
def test_parser_with_umlauts(self):
parser = XMLParser()
if parser.isAvailable():
source = open(setup.UMLAUTS_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
self.failUnless(len(entries) == 1)
entry = entries.entries[0]
self.assertEqual(entry.publisher, u'Übersöpf Verlag'.encode('utf-8'))
def test_parser_with_umlauts(self):
parser = XMLParser()
if parser.isAvailable():
source = open(setup.UMLAUTS_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
self.failUnless(len(entries) == 1)
entry = entries.entries[0]
self.assertEqual(entry.publisher,
u'Übersöpf Verlag'.encode('utf-8'))
def test_Parser(self):
"""test the functioning of the parser"""
parser = XMLParser()
if parser.isAvailable():
source = open(setup.MEDLINE_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
# are there enough entries?
self.failUnless(len(entries) == 4)
# are there the right number of authors?
self.failUnless(len(entries.author_last_names()) == 13)
# test individual name parsings:
# lastname, one initial
this_entry = entries.entryByTitle(
"Molecular genetic evidence for parthenogenesis in the Burmese python, Python molurus bivittatus."
)
expected_author = {
"firstname": "E.",
"middlename": "",
"lastname": "Bruins"
}
self.failUnless(this_entry.authorIsPresent(expected_author),
"author: %s is not listed" % expected_author)
# lastname, more than one initial
expected_author = {
"firstname": "T.",
"middlename": "V. M.",
"lastname": "Groot"
}
self.failUnless(this_entry.authorIsPresent(expected_author),
"author: %s is not listed" % expected_author)
# lastname, firstname, middle initial
this_entry = entries.entryByTitle(
"Pharmacokinetics and tissue concentrations of azithromycin in ball pythons (Python regius)."
)
expected_author = {
"firstname": "Robert",
"middlename": "P.",
"lastname": "Hunter"
}
self.failUnless(this_entry.authorIsPresent(expected_author),
"author: %s is not listed" % expected_author)
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print("-" * 20) + "\n"
def test_FormatDetection(self):
parser = XMLParser()
s1 = open(setup.MEDLINE_TEST_XML, 'r').read()
s2 = open(setup.MEDLINE_TEST_BIB, 'r').read()
s3 = open(setup.MEDLINE_TEST_MED, 'r').read()
self.failUnless(parser.checkFormat(s1),
'XML Parser failed to detect XML(MODS) format')
self.failIf(
parser.checkFormat(s2),
'XML Parser incorrectly detected Bibtex format as XML(MODS)')
self.failIf(
parser.checkFormat(s3),
'XML Parser incorrectly detected Medline format as XML(MODS)')
def test_parser_contract(self):
self.failUnless(IBibliographyParser.providedBy(XMLParser()))
self.failUnless(verifyObject(IBibliographyParser, XMLParser()))
def parseEntry(self, entry):
return fixupresult(XMLParser.parseEntry(self, entry))
