def folderitems(self):
mtool = getToolByName(self.context, 'portal_membership')
member = mtool.getAuthenticatedMember()
roles = member.getRoles()
self.allow_edit = 'LabManager' in roles or 'Manager' in roles
items = BikaListingView.folderitems(self)
for x in range(len(items)):
if not items[x].has_key('obj'):
continue
obj = items[x]['obj']
cat = obj.getCategoryTitle()
# Category (upper C) is for display column value
items[x]['Category'] = cat
if self.do_cats:
# category is for bika_listing to groups entries
items[x]['category'] = cat
if cat not in self.categories:
self.categories.append(cat)
analyses = [a.UID() for a in self.field_value]
items[x]['selected'] = items[x]['uid'] in analyses
items[x]['class']['Title'] = 'service_title'
calculation = obj.getCalculation()
items[x]['Calculation'] = calculation and calculation.Title()
locale = locales.getLocale('en')
currency = self.context.bika_setup.getCurrency()
symbol = locale.numbers.currencies[currency].symbol
items[x]['Price'] = "%s %s" % (symbol, obj.getPrice())
items[x]['class']['Price'] = 'nowrap'
after_icons = ''
if obj.getAccredited():
after_icons += "<img\
src='%s/++resource++bika.lims.images/accredited.png'\
title='%s'>" % (self.context.absolute_url(),
_("Accredited"))
if obj.getReportDryMatter():
after_icons += "<img\
src='%s/++resource++bika.lims.images/dry.png'\
title='%s'>" % (self.context.absolute_url(),
_("Can be reported as dry matter"))
if obj.getAttachmentOption() == 'r':
after_icons += "<img\
src='%s/++resource++bika.lims.images/attach_reqd.png'\
title='%s'>" % (self.context.absolute_url(),
_("Attachment required"))
if obj.getAttachmentOption() == 'n':
after_icons += "<img\
src='%s/++resource++bika.lims.images/attach_no.png'\
title='%s'>" % (self.context.absolute_url(),
_('Attachment not permitted'))
if after_icons:
items[x]['after']['Title'] = after_icons
return items
def __init__(self, context, request, uids):
super(ProjectBiospecView, self).__init__(context, request)
self.uids = uids
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.show_column_toggles = False
self.context_actions = {}
self.allow_edit = False
self.pagesize = 999999
self.contentFilter['UID'] = self.uids
self.columns = {
'Title': {
'title': _('Name'),
'index': 'sortable_title'
},
'Description': {
'title': _('Description'),
'index': 'description',
'toggle': True
},
}
self.review_states = [
{
'id': 'default',
'title': _('All'),
'contentFilter': {},
'columns': ['Title', 'Description']
},
]
def folderitems(self):
mtool = getToolByName(self.context, 'portal_membership')
member = mtool.getAuthenticatedMember()
roles = member.getRoles()
self.allow_edit = 'LabManager' in roles or 'Manager' in roles
items = BikaListingView.folderitems(self)
for x in range(len(items)):
if not items[x].has_key('obj'):
continue
obj = items[x]['obj']
cat = obj.getCategoryTitle()
# Category (upper C) is for display column value
items[x]['Category'] = cat
if self.do_cats:
# category is for bika_listing to groups entries
items[x]['category'] = cat
if cat not in self.categories:
self.categories.append(cat)
analyses = [a.UID() for a in self.field_value]
items[x]['selected'] = items[x]['uid'] in analyses
items[x]['class']['Title'] = 'service_title'
calculation = obj.getCalculation()
items[x]['Calculation'] = calculation and calculation.Title()
locale = locales.getLocale('en')
currency = self.context.bika_setup.getCurrency()
symbol = locale.numbers.currencies[currency].symbol
items[x]['Price'] = "%s %s" % (symbol, obj.getPrice())
items[x]['class']['Price'] = 'nowrap'
after_icons = ''
if obj.getAccredited():
after_icons += "<img\
src='%s/++resource++bika.lims.images/accredited.png'\
title='%s'>" % (self.context.absolute_url(),
_("Accredited"))
if obj.getReportDryMatter():
after_icons += "<img\
src='%s/++resource++bika.lims.images/dry.png'\
title='%s'>" % (self.context.absolute_url(),
_("Can be reported as dry matter"))
if obj.getAttachmentOption() == 'r':
after_icons += "<img\
src='%s/++resource++bika.lims.images/attach_reqd.png'\
title='%s'>" % (self.context.absolute_url(),
_("Attachment required"))
if obj.getAttachmentOption() == 'n':
after_icons += "<img\
src='%s/++resource++bika.lims.images/attach_no.png'\
title='%s'>" % (self.context.absolute_url(),
_('Attachment not permitted'))
if after_icons:
items[x]['after']['Title'] = after_icons
return items
def __init__(self, context, request):
super(KitTemplatesView, self).__init__(context, request)
request.set('disable_plone.rightcolumn', 1)
self.catalog = "bika_setup_catalog"
self.contentFilter = {
'portal_type': 'KitTemplate',
'sort_on': 'created',
'sort_order': 'reverse',
#'path': {"query": "/", "level": 0},
'inactive_state': 'active',
}
self.context_actions = {}
if self.context.portal_type == "KitTemplates":
self.request.set('disable_border', 1)
if self.view_url.find("kittemplates") == -1:
self.view_url = self.view_url + "/kittemplates"
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.form_id = "kittemplates"
self.icon = self.portal_url + "/++resource++bika.lims.images/samplepartition_big.png"
self.title = self.context.translate(_("Kit Templates"))
self.description = ""
mtool = getToolByName(self.context, 'portal_membership')
member = mtool.getAuthenticatedMember()
self.columns = {
'Title': {
'title': _('Title')
},
'Description': {
'title': _('Description'),
'index': 'description',
'toggle': True
}
}
self.review_states = [
{
'id': 'default',
'title': _('Active'),
#'contentFilter': {'sort_on':'created', 'sort_order': 'reverse'},
'contentFilter': {
'inactive_state': 'active'
},
'transitions': [
{
'id': 'deactivate'
},
],
'columns': ['Title', 'Description']
},
]
class SampleTypeSchemaExtender(object):
adapts(ISampleType)
implements(IOrderableSchemaExtender)
fields = [
ExtReferenceField(
'Service',
schemata='Analyses',
multiValued=1,
allowed_types=('AnalysisService', ),
relationship='SampleTypeAnalysisService',
widget=ProjectAnalysesWidget(
label=_("Sample Analyses"),
description=
_("The analyses included in this sample type, grouped per category"
),
)),
]
def __init__(self, context):
self.context = context
def getFields(self):
return self.fields
def getOrder(self, schematas):
return schematas
def __call__(self, *args, **kwargs):
"""
"""
mtool = getToolByName(self.context, 'portal_membership')
if mtool.checkPermission("Modify portal content", self.context):
self.context_actions[_('Add')] = {
'url': 'createObject?type_name=KitTemplate',
'icon': '++resource++bika.lims.images/add.png'
}
self.review_states.append(
{'id':'inactive',
'title': _('Dormant'),
'contentFilter': {'inactive_state': 'inactive'},
'transitions': [{'id':'activate'}, ],
'columns': ['Title',]})
self.review_states.append(
{'id': 'All',
'title': _('All'),
'contentFilter': {},
'transitions':[{'id':'empty'}],
'columns': [
'Title',
]})
stat = self.request.get("%s_review_state"%self.form_id, 'default')
self.show_select_column = stat != 'all'
return super(KitTemplatesView, self).__call__()
def __init__(self, context, request, uids):
self.uids = uids
super(ProjectAnalysisServicesView, self).__init__(context, request)
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.show_column_toggles = False
self.context_actions = {}
self.allow_edit = False
self.pagesize = 999999
self.contentFilter['UID'] = self.uids
self.show_categories = True
self.expand_all_categories = True
self.ajax_categories = False
self.columns = {
'Title': {
'title': _('Service'),
'index': 'sortable_title'
},
'Price': {
'title': _('Price')
},
}
self.review_states = [{
'id': 'default',
'title': _('All'),
'contentFilter': {},
'columns': ['Title', 'Price']
}]
def __init__(self, context, request, kit_uids):
super(ShipmentKitsView, self).__init__(context, request)
self.context = context
self.request = request
self.uids = kit_uids
self.catalog = 'bika_catalog'
path = path = '/'.join(context.aq_parent.getPhysicalPath())
self.contentFilter = {
'portal_type': 'Kit',
'UID': self.uids,
'sort_on': 'sortable_title',
'path': {
'query': path,
'depth': 1,
'level': 0
}
}
self.context_actions = {}
self.title = ''
self.description = ''
self.icon = ''
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.show_column_toggles = False
self.context_actions = {}
self.allow_edit = False
self.pagesize = 999999
self.columns = {
'Title': {
'title': _('Kit Name'),
'index': 'sortable_title'
},
'kitTemplate': {
'title': _('Kit template'),
'toggle': True
},
'state_title': {
'title': _('State'),
'index': 'review_state'
},
}
self.review_states = [{
'id':
'default',
'title':
_('All'),
'contentFilter': {
'sort_on': 'created',
'sort_order': 'ascending'
},
'transitions': [],
'columns': ['Title', 'kitTemplate', 'state_title']
}]
def __init__(self, context, request, field_value=[], allow_edit=False):
super(ProjectAnalysesView, self).__init__(context, request)
self.catalog = "bika_setup_catalog"
self.contentFilter = {'portal_type': 'AnalysisService',
'sort_on': 'sortable_title',
'inactive_state': 'active'}
self.context_actions = {}
self.base_url = self.context.absolute_url()
self.view_url = self.base_url
self.show_sort_column = False
self.show_select_row = False
self.show_select_all_checkbox = False
self.show_column_toggles = False
self.show_select_column = True
self.allow_edit = allow_edit
self.form_id = "analyses"
self.profile = None
self.categories = []
self.do_cats = self.context.bika_setup.getCategoriseAnalysisServices()
if self.do_cats:
self.pagesize = 999999 # hide batching controls
self.show_categories = True
self.expand_all_categories = False
self.ajax_categories = True
self.ajax_categories_url = self.context.absolute_url() + \
"/sampletype_analysesview"
self.category_index = 'getCategoryTitle'
self.columns = {
'Title': {'title': _('Service'),
'index': 'sortable_title',
'sortable': False,},
'Price': {'title': _('Price'),
'sortable': False,},
}
self.review_states = [
{'id': 'default',
'title': _('All'),
'contentFilter': {},
'columns': ['Title',
'Price',
],
'transitions': [{'id': 'empty'}, ], # none
},
]
if not context.bika_setup.getShowPrices():
self.review_states[0]['columns'].remove('Price')
self.field_value = field_value
self.selected = [x.UID() for x in field_value]
def __init__(self, context, request):
super(KitTemplatesView, self).__init__(context, request)
request.set('disable_plone.rightcolumn', 1)
self.catalog = "bika_setup_catalog"
self.contentFilter = {'portal_type': 'KitTemplate',
'sort_on': 'created',
'sort_order': 'reverse',
#'path': {"query": "/", "level": 0},
'inactive_state': 'active',
}
self.context_actions = {}
if self.context.portal_type == "KitTemplates":
self.request.set('disable_border', 1)
if self.view_url.find("kittemplates") == -1:
self.view_url = self.view_url + "/kittemplates"
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.form_id = "kittemplates"
self.icon = self.portal_url + "/++resource++bika.lims.images/samplepartition_big.png"
self.title = self.context.translate(_("Kit Templates"))
self.description = ""
mtool = getToolByName(self.context, 'portal_membership')
member = mtool.getAuthenticatedMember()
self.columns = {
'Title': {'title': _('Title')},
'Description': {'title': _('Description'),
'index': 'description',
'toggle': True}
}
self.review_states = [
{'id': 'default',
'title': _('Active'),
#'contentFilter': {'sort_on':'created', 'sort_order': 'reverse'},
'contentFilter': {'inactive_state': 'active'},
'transitions': [{'id':'deactivate'}, ],
'columns': [
'Title',
'Description'
]},
]
class ProjectView(BrowserView):
"""
"""
template = ViewPageTemplateFile("templates/project_view.pt")
title = _("Project Registration")
def __call__(self):
context = self.context
request = self.request
portal = self.portal
self.absolute_url = context.absolute_url()
setup = portal.bika_setup
# __Disable the add new menu item__ #
context.setLocallyAllowedTypes(())
# __Collect general data__ #
self.id = context.getId()
self.title = context.Title()
self.client = "<a href='%s'>%s</a>" % (
context.aq_parent.absolute_url(), context.aq_parent.Title())
self.study_type = context.getStudyType()
self.participants = context.getNumParticipants()
self.age_interval = str(context.getAgeLow()) + ' - ' + str(
context.getAgeHigh())
biospecimen_types = ProjectBiospecView(context, request,
context.getSampleType())
self.bio_table = biospecimen_types.contents_table()
uids = [o.UID() for o in context.getService()]
view = ProjectAnalysisServicesView(context, request, uids)
self.analyses_table = view.contents_table()
return self.template()
def __init__(self, context, request, kit_uids):
super(ShipmentKitsView, self).__init__(context, request)
self.context = context
self.request = request
self.uids = kit_uids
self.catalog = 'bika_catalog'
path = path = '/'.join(context.aq_parent.getPhysicalPath())
self.contentFilter = {
'portal_type': 'Kit',
'UID': self.uids,
'sort_on': 'sortable_title',
'path': {'query': path, 'depth': 1, 'level': 0}
}
self.context_actions = {}
self.title = ''
self.description = ''
self.icon = ''
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.show_column_toggles = False
self.context_actions = {}
self.allow_edit = False
self.pagesize = 999999
self.columns = {
'Title': {'title': _('Kit Name'),
'index': 'sortable_title'},
'kitTemplate': {'title': _('Kit template'),
'toggle': True},
'state_title': {'title': _('State'),
'index': 'review_state'},
}
self.review_states = [
{
'id': 'default',
'title': _('All'),
'contentFilter': {'sort_on': 'created',
'sort_order': 'ascending'},
'transitions': [],
'columns': [
'Title',
'kitTemplate',
'state_title'
]
}
]
def _getBiospecimensDisplayList(self):
bsc = getToolByName(self, 'bika_setup_catalog')
items = [(i.UID, i.Title) \
for i in bsc(portal_type='SampleType',
inactive_state='active')]
items.sort(lambda x, y: cmp(x[1], y[1]))
items.insert(0, ('', _("None")))
return DisplayList(list(items))
def _getBiospecimensDisplayList(self):
bsc = getToolByName(self, 'bika_setup_catalog')
items = [(i.UID, i.Title) \
for i in bsc(portal_type='SampleType',
inactive_state='active')]
items.sort(lambda x, y: cmp(x[1], y[1]))
items.insert(0, ('', _("None")))
return DisplayList(list(items))
def __init__(self, context, request):
super(InvoiceCreate, self).__init__(context, request)
self.context = context
self.columns['service'] = {'title': _('Service')}
# Add column 'service' to the lising table columns
for state in self.review_states:
state['columns'].insert(state['columns'].index('start'), 'service')
def __init__(self, context, request):
super(StorageUnitInventoryView, self).__init__(context, request)
self.contentFilter['getUnitID'] = context.getId()
self.context_actions = {
_('Add'): {
'url': 'createObject?type_name=StorageInventory',
'icon': '++resource++bika.lims.images/add.png'
}
}
class AnalysisRequestSchemaExtender(object):
adapts(IAnalysisRequest)
implements(IOrderableSchemaExtender)
fields = [
ExtReferenceField(
'Project',
vocabulary_display_path_bound=sys.maxsize,
allowed_types=('Project',),
referenceClass=HoldingReference,
relationship='AnalysisRequestProject',
mode="rw",
read_permission=permissions.View,
write_permission=permissions.ModifyPortalContent,
widget=bikaReferenceWidget(
label=_("Project"),
description=_("Select the project of the AR."),
size=20,
visible={'edit': 'invisible',
'view': 'visible',
'add': 'edit',
'header_table': 'visible',
'sample_due': {'view': 'visible', 'edit': 'invisible'},
'sample_received': {'view': 'visible', 'edit': 'invisible'},
'to_be_verified': {'view': 'visible', 'edit': 'invisible'},
'verified': {'view': 'visible', 'edit': 'invisible'},
'published': {'view': 'visible', 'edit': 'invisible'},
'invalid': {'view': 'visible', 'edit': 'invisible'},
'rejected': {'view': 'visible', 'edit': 'invisible'},
},
catalog_name='bika_catalog',
),
),
]
def __init__(self, context):
self.context = context
def getOrder(self, schematas):
return schematas
def getFields(self):
return self.fields
def __init__(self, context, request, field_value=[], allow_edit=False):
super(ProductSuppliersView, self).__init__(context, request)
self.catalog = "bika_setup_catalog"
self.contentFilter = {'portal_type': 'Supplier',
'sort_on': 'sortable_title',
'inactive_state': 'active'}
self.context_actions = {}
self.base_url = context.absolute_url()
self.view_url = self.base_url
self.show_sort_column = False
self.show_select_row = False
self.show_select_all_checkbox = False
self.show_column_toggles = False
self.show_select_column = True
self.allow_edit = allow_edit
self.form_id = "suppliers"
self.profile = None
self.do_cats = False
self.columns = {
'Name': {'title': _('Name'),
'index': 'sortable_title',
'sortable': False,},
'Website': {'title': _('Website'),
'sortable': False,},
}
self.review_states = [
{'id': 'default',
'title': _('All'),
'contentFilter': {},
'columns': ['Name',
'Website',
],
'transitions': [{'id': 'empty'}, ],
},
]
self.field_value = field_value
self.selected = [x.UID() for x in field_value]
def __call__(self, *args, **kwargs):
"""
"""
mtool = getToolByName(self.context, 'portal_membership')
if mtool.checkPermission("Modify portal content", self.context):
self.context_actions[_('Add')] = {
'url': 'createObject?type_name=KitTemplate',
'icon': '++resource++bika.lims.images/add.png'
}
self.review_states.append({
'id': 'inactive',
'title': _('Dormant'),
'contentFilter': {
'inactive_state': 'inactive'
},
'transitions': [
{
'id': 'activate'
},
],
'columns': [
'Title',
]
})
self.review_states.append({
'id': 'All',
'title': _('All'),
'contentFilter': {},
'transitions': [{
'id': 'empty'
}],
'columns': [
'Title',
]
})
stat = self.request.get("%s_review_state" % self.form_id,
'default')
self.show_select_column = stat != 'all'
return super(KitTemplatesView, self).__call__()
def __call__(self):
mtool = getToolByName(self.context, "portal_membership")
if mtool.checkPermission(AddShipment, self.context) and self.context.portal_type == "Project":
self.context_actions[_("Add")] = {
"url": "createObject?type_name=Shipment",
"icon": "++resource++bika.lims.images/add.png",
}
if mtool.checkPermission(ManageShipments, self.context):
stat = self.request.get("%s_review_state" % self.form_id, "default")
# self.show_select_column = stat != 'all'
return super(ShipmentsView, self).__call__()
def __call__(self):
mtool = getToolByName(self.context, 'portal_membership')
addPortalMessage = self.context.plone_utils.addPortalMessage
w_tool = getToolByName(self.context, 'portal_workflow')
active_contacts = [c for c in self.context.objectValues('Contact') if
w_tool.getInfoFor(c, 'inactive_state', '') == 'active']
if isActive(self.context):
if self.context.portal_type == "Client":
if not active_contacts:
msg = _("Client contact required before request may be submitted")
addPortalMessage(msg)
else:
if mtool.checkPermission(AddProject, self.context):
self.context_actions[_('Add')] = {
'url': 'createObject?type_name=Project',
'icon': '++resource++bika.lims.images/add.png'
}
if mtool.checkPermission(ManageProjects, self.context):
self.review_states[0]['transitions'].append({'id': 'deactivate'})
self.review_states.append(
{'id': 'inactive',
'title': _('Dormant'),
'contentFilter': {'inactive_state': 'inactive'},
'transitions': [{'id': 'activate'}, ],
'columns': ['Title',
'getClient',
'getStudyType']})
self.review_states.append(
{'id': 'all',
'title': _('All'),
'contentFilter': {},
'transitions': [{'id': 'empty'}],
'columns': ['Title',
'getClient',
'getStudyType']})
stat = self.request.get("%s_review_state" % self.form_id, 'default')
self.show_select_column = stat != 'all'
return super(ProjectsView, self).__call__()
def __call__(self):
mtool = getToolByName(self.context, 'portal_membership')
if mtool.checkPermission(AddShipment, self.context) and \
self.context.portal_type == 'Project':
self.context_actions[_('Add')] = {
'url': 'createObject?type_name=Shipment',
'icon': '++resource++bika.lims.images/add.png'
}
if mtool.checkPermission(ManageShipments, self.context):
stat = self.request.get("%s_review_state" % self.form_id,
'default')
# self.show_select_column = stat != 'all'
return super(ShipmentsView, self).__call__()
def __init__(self, context, request):
super(ProjectsView, self).__init__(context, request)
self.catalog = "bika_catalog"
self.contentFilter = {'portal_type': 'Project',
'sort_on': 'sortable_title'}
self.context_actions = {}
self.title = self.context.translate(_("Projects"))
self.icon = self.portal_url + \
"/++resource++bika.sanbi.images/project_big.png"
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.pagesize = 50
if self.context.portal_type == 'Projects':
self.request.set('disable_border', 1)
self.columns = {
'Title': {'title': _('Project'),
'index': 'sortable_title'},
'getClient': {'title': _('Client'),
'toggle': True},
'getStudyType': {'title': _('Study Type'),
'toggle': True},
}
self.review_states = [
{'id': 'default',
'title': _('Active'),
'contentFilter': {'inactive_state': 'active'},
'transitions': [],
'columns': ['Title',
'getClient',
'getStudyType']},
]
def renderSTemplate(self):
templates_dir = self._TEMPLATES_DIR
template_name = 'sticker_kit.pt'
embed = ViewPageTemplateFile(os.path.join(templates_dir, template_name))
reptemplate = ""
try:
reptemplate = embed(self)
except:
tbex = traceback.format_exc()
ktid = self.context.id
reptemplate = "<div class='error-print'>%s - %s '%s':<pre>%s</pre></div>" % (
ktid, _("Unable to load the template"), template_name, tbex)
return reptemplate
def renderSTemplate(self):
templates_dir = self._TEMPLATES_DIR
template_name = 'sticker_kit.pt'
embed = ViewPageTemplateFile(os.path.join(templates_dir,
template_name))
reptemplate = ""
try:
reptemplate = embed(self)
except:
tbex = traceback.format_exc()
ktid = self.context.id
reptemplate = "<div class='error-print'>%s - %s '%s':<pre>%s</pre></div>" % (
ktid, _("Unable to load the template"), template_name, tbex)
return reptemplate
def render_shipment(self):
templates_dir = self._TEMPLATES_DIR
template_name = 'shipment_print.pt'
self.header_text = "{0} : {1}".format(self.context.aq_parent,
self.context.aq_parent.getId())
embed = ViewPageTemplateFile(os.path.join(templates_dir, template_name))
reptemplate = ""
try:
reptemplate = embed(self)
except:
tbex = traceback.format_exc()
ktid = self.context.id
reptemplate = "<div class='error-print'>%s - %s " \
"'%s':<pre>%s</pre></div>" % (
ktid, _("Unable to load the template"), template_name, tbex)
return reptemplate
def render_invoice(self):
"""Render template
"""
templates_dir = self._TEMPLATES_DIR
template_name = 'invoice.pt'
template_file = ViewPageTemplateFile(os.path.join(templates_dir, template_name))
embed = template_file
try:
rep_template = embed(self)
except:
tbex = traceback.format_exc()
ktid = self.context.id
rep_template = "<div class='error-print'>%s - %s " \
"'%s':<pre>%s</pre></div>" % (
ktid, _("Unable to load the template"), template_name, tbex)
return rep_template
def render_shipment(self):
templates_dir = self._TEMPLATES_DIR
template_name = 'shipment_print.pt'
self.header_text = "{0} : {1}".format(self.context.aq_parent,
self.context.aq_parent.getId())
embed = ViewPageTemplateFile(os.path.join(templates_dir,
template_name))
reptemplate = ""
try:
reptemplate = embed(self)
except:
tbex = traceback.format_exc()
ktid = self.context.id
reptemplate = "<div class='error-print'>%s - %s " \
"'%s':<pre>%s</pre></div>" % (
ktid, _("Unable to load the template"), template_name, tbex)
return reptemplate
def __init__(self, context, request):
super(StorageTypesView, self).__init__(context, request)
self.catalog = 'bika_setup_catalog'
self.contentFilter = {'portal_type': 'StorageType',
'sort_on': 'sortable_title'}
self.context_actions = {_('Add'):
{'url': 'createObject?type_name=StorageType',
'icon': '++resource++bika.lims.images/add.png'}}
self.icon = self.portal_url + "/++resource++bika.lims.images/to_follow_big.png"
self.title = self.context.translate(_("Storage Types"))
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.pagesize = 25
self.columns = {
'Title': {'title': _('Type'),
'index': 'sortable_title'},
'Description': {'title': _('Description'),
'index': 'description',
'toggle':True},
}
self.review_states = [
{
'id':'default',
'title': _('Active'),
'contentFilter': {'inactive_state': 'active'},
'transitions': [{'id':'deactivate'}, ],
'columns': ['Title', 'Description']
},
{
'id':'inactive',
'title': _('Dormant'),
'contentFilter': {'inactive_state': 'inactive'},
'transitions': [{'id':'activate'}, ],
'columns': ['Title', 'Description']
},
{
'id':'all',
'title': _('All'),
'contentFilter':{},
'columns': ['Title', 'Description']
},
]
class MultimageView(BrowserView):
template = ViewPageTemplateFile("templates/multimage_view.pt")
title = _("Managing Storage")
def __call__(self):
context = self.context
request = self.request
portal = self.portal
self.filename = context.getFile().filename
self.path = context.getFile().absolute_url_path()
self.size = context.get_size()
self.full_screen = self.path + "/image_view_fullscreen"
self.image_src = self.path + "/image_preview"
self.download = self.path + "/download"
self.search_icon = portal.absolute_url() + "/search_icon.png"
self.download_icon = portal.absolute_url() + "/download_icon.png"
return self.template()
def render_invoice(self):
"""Render template
"""
templates_dir = self._TEMPLATES_DIR
template_name = 'invoice.pt'
template_file = ViewPageTemplateFile(
os.path.join(templates_dir, template_name))
embed = template_file
try:
rep_template = embed(self)
except:
tbex = traceback.format_exc()
ktid = self.context.id
rep_template = "<div class='error-print'>%s - %s " \
"'%s':<pre>%s</pre></div>" % (
ktid, _("Unable to load the template"), template_name, tbex)
return rep_template
class InvoiceBatchSchemaExtender(object):
adapts(IInvoiceBatch)
implements(IOrderableSchemaExtender)
fields = [
ExtReferenceField(
'Project',
allowed_types=('Project', ),
relationship='InvoiceProject',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Project"),
catalog_name='bika_catalog',
size=30,
showOn=True,
description=_("Click and select project for the kit."),
)),
ExtStringField('Service',
searchable=True,
vocabulary=INVOICE_SERVICES,
widget=SelectionWidget(
format="select",
label=_("Service"),
description=_("Select the service to invoice."),
)),
ExtLinesField(
'Services',
vocabulary=INVOICE_SERVICES,
widget=MultiSelectionWidget(
label=_("Invoice Services"),
description=_("Select the services to invoice."),
),
),
]
def __init__(self, context):
self.context = context
def getFields(self):
return self.fields
def getOrder(self, schematas):
sch = schematas['default']
sch.remove('Project')
sch.remove('Services')
sch.insert(sch.index('BatchStartDate'), 'Project')
sch.insert(sch.index('BatchStartDate'), 'Services')
schematas['default'] = sch
return schematas
def __init__(self, context, request):
super(MultimagesView, self).__init__(context, request)
self.catalog = "bika_setup_catalog"
self.contentFilter = {
'portal_type': 'Multimage',
}
self.context_actions = {_('Add'):
{'url': 'createObject?type_name=Multimage',
'icon':
'++resource++bika.lims.images/add.png'}}
self.show_table_only = False
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.pagesize = 25
self.form_id = "multimage"
self.icon = self.portal_url + \
"/++resource++bika.lims.images" \
"/instrumentcertification_big.png"
self.title = self.context.translate(_("Images"))
self.description = ""
self.columns = {
"DocumentID": {'title': _("Document ID"),
'index': 'sortable_title'},
"SmallDesc": {'title': _("Description"),
'index': 'sortable_title'},
"DatetimeCreated": {'title': _("Date Creation"),
'toggle': False},
'FileDownload': {'title': _('File')}
}
self.review_states = [
{'id': 'default',
'title': _("All"),
'contentFilter': {},
'columns': ['DocumentID',
'SmallDesc',
'FileDownload',
'DatetimeCreated']},
]
from Products.Archetypes.public import DisplayList
from bika.sanbi import bikaMessageFactory as _
PROJECTNAME = "SANBI"
GLOBALS = globals()
INVENTORY_TYPES = DisplayList((
('N', _('None')),
('g', _('Glassware')),
('a', _('Reagents Ambient Temperature')),
('t', _('Reagents Cold Temperature')),
('o', _('Other')),
))
DIMENSION_OPTIONS = DisplayList((
('N', _('None')),
('f', _('One Dimension\t')),
('s', _('Two Dimension\t')),
))
VOLUME_UNITS = [{
'ResultValue': '1',
'ResultText': 'ml'
}, {
'ResultValue': '2',
'ResultText': 'kg'
}]
PRICELIST_TYPES = DisplayList((
('AnalysisService', _('Analysis Services')),
def __init__(self, context, request):
super(StorageTypesView, self).__init__(context, request)
self.catalog = 'bika_setup_catalog'
self.contentFilter = {
'portal_type': 'StorageType',
'sort_on': 'sortable_title'
}
self.context_actions = {
_('Add'): {
'url': 'createObject?type_name=StorageType',
'icon': '++resource++bika.lims.images/add.png'
}
}
self.icon = self.portal_url + "/++resource++bika.lims.images/to_follow_big.png"
self.title = self.context.translate(_("Storage Types"))
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.pagesize = 25
self.columns = {
'Title': {
'title': _('Type'),
'index': 'sortable_title'
},
'Description': {
'title': _('Description'),
'index': 'description',
'toggle': True
},
}
self.review_states = [
{
'id': 'default',
'title': _('Active'),
'contentFilter': {
'inactive_state': 'active'
},
'transitions': [
{
'id': 'deactivate'
},
],
'columns': ['Title', 'Description']
},
{
'id': 'inactive',
'title': _('Dormant'),
'contentFilter': {
'inactive_state': 'inactive'
},
'transitions': [
{
'id': 'activate'
},
],
'columns': ['Title', 'Description']
},
{
'id': 'all',
'title': _('All'),
'contentFilter': {},
'columns': ['Title', 'Description']
},
]
return instance.getKit().UID()
@indexer(IBiospecimen)
def get_biospecimen_project_uid(instance):
return instance.getKit().getProject().UID()
schema = BikaFolderSchema.copy() + BikaSchema.copy() + Schema((
ReferenceField(
'Type',
vocabulary_display_path_bound=sys.maxint,
allowed_types=('BiospecType',),
relationship='BiospecimenType',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Biospecimen type"),
catalog_name='bika_setup_catalog',
size=30,
showOn=True,
description=_("Click and select a biospecimen type."),
visible={'view': 'invisible', 'edit': 'visible'}
)
),
ReferenceField('Kit',
vocabulary_display_path_bound=sys.maxint,
allowed_types=('Kit',),
relationship='BiospecimenKit',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Kit"),
def __init__(self, context, request):
super(AliquotsView, self).__init__(context, request)
self.context = context
self.request = request
self.catalog = "bika_catalog"
self.contentFilter = {
'portal_type': 'Sample',
'sort_on': 'sortable_title'
}
# self.sort_on = 'Title'
self.context_actions = {}
self.title = self.context.translate(_("Aliquots"))
self.icon = self.portal_url + \
"/++resource++bika.sanbi.images/aliquot_big.png"
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.pagesize = 50
request.set('disable_plone.rightcolumn', 1)
self.allow_edit = True
if self.context.portal_type == 'Aliquots':
self.request.set('disable_border', 1)
self.columns = {
'Title': {
'title': _('Aliquot'),
'index': 'sortable_title'
},
'Biospecimen': {
'title': _('Biospecimen'),
'toggle': True
},
'AliquotType': {
'title': _('Aliquot Type'),
'toggle': True
},
'Volume': {
'title': _('Volume'),
'toggle': True,
'input_width': '7'
},
'Unit': {
'title': _('Unit'),
'toggle': True,
'input_width': '15'
},
'Project': {
'title': _('Project'),
'index': 'sortable_title'
},
'state_title': {
'title': _('State'),
'index': 'review_state'
},
# 'Location': {'title': _('Location'),
# 'toggle': True},
}
self.review_states = [
{
'id':
'default',
'title':
_('Active'),
'contentFilter': {
'cancellation_state': 'active',
'sort_order': 'ascending'
},
'transitions': [{
'id': 'receive'
}, {
'id': 'cancel'
}],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id':
'sample_due',
'title':
_('Sample Due'),
'contentFilter': {
'review_state': 'sample_due',
'sort_order': 'ascending'
},
'transitions': [{
'id': 'receive'
}, {
'id': 'cancel'
}],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id':
'sample_received',
'title':
_('Received'),
'contentFilter': {
'review_state': 'sample_received'
},
'transitions': [
{
'id': 'cancel'
},
],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id':
'cancelled',
'title':
_('Cancelled'),
'contentFilter': {
'cancellation_state': 'cancelled'
},
'transitions': [
{
'id': 'reinstate'
},
],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id':
'all',
'title':
_('All'),
'contentFilter': {},
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
# 'Location'
]
}
]
def __init__(self, context, request):
super(BiospecimensView, self).__init__(context, request)
self.context = context
self.catalog = 'bika_catalog'
request.set('disable_plone.rightcolumn', 1)
self.contentFilter = {
'portal_type': 'Sample',
'sort_on': 'created',
'sort_order': 'ascending'
}
self.context_actions = {}
self.title = self.context.translate(_("Biospecimens"))
self.icon = self.portal_url + \
"/++resource++bika.sanbi.images/biospecimen_big.png"
self.description = ''
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.pagesize = 25
self.allow_edit = True
if self.context.portal_type == 'Biospecimens':
self.request.set('disable_border', 1)
self.columns = {
'Title': {
'title': _('Title'),
'index': 'sortable_title'
},
'Type': {
'title': _('Type'),
'toggle': True,
'type': 'choices'
},
'Volume': {
'title': _('Volume'),
'toggle': True,
'input_width': '7'
},
'Unit': {
'title': _('Unit'),
'toggle': True
},
'SubjectID': {
'title': _('Subject ID'),
'allow_edit': True,
'input_class': 'text',
'input_width': '10',
'toggle': True
},
'Kit': {
'title': _('Kit'),
'index': 'sortable_title'
},
'Barcode': {
'title': _('Barcode'),
'allow_edit': True,
'input_class': 'text',
'input_width': '10',
'toggle': True
},
'Project': {
'title': _('Project'),
'index': 'sortable_title'
},
'state_title': {
'title': _('State'),
'index': 'review_state'
},
# 'Location': {
# 'title': _('Location'),
# 'toggle': True
# },
}
self.review_states = [
{
'id': 'default',
'title': _('Active'),
'contentFilter': {
'cancellation_state': 'active',
'sort_on': 'created',
'sort_order': 'ascending'
},
'transitions': [
{'id': 'receive'},
{'id': 'cancel'}
],
'columns': [
'Title',
'Project',
'Kit',
'Type',
'SubjectID',
'Barcode',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'sample_due',
'title': _('Sample Due'),
'contentFilter': {
'review_state': 'sample_due',
'cancellation_state': 'active',
'sort_on': 'created',
'sort_order': 'ascending'
},
'transitions': [
{'id': 'receive'},
{'id': 'cancel'}
],
'columns': [
'Title',
'Project',
'Kit',
'Type',
'SubjectID',
'Barcode',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'sample_received',
'title': _('Received'),
'contentFilter': {
'review_state': 'sample_received',
'sort_on': 'created',
'sort_order': 'reverse'
},
'transitions': [
{'id': 'cancel'}
],
'columns': [
'Title',
'Project',
'Kit',
'Type',
'SubjectID',
'Barcode',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'cancelled',
'title': _('Cancelled'),
'contentFilter':{
'cancellation_state': 'cancelled',
'sort_order': 'reverse',
'sort_on':'created'
},
'transitions': [
{'id': 'reinstate'},
],
'columns': [
'Title',
'Project',
'Kit',
'Type',
'SubjectID',
'Barcode',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'all',
'title': _('All'),
'contentFilter': {
'sort_on': 'created',
'sort_order': 'ascending'
},
'columns': [
'Title',
'Project',
'Kit',
'Type',
'SubjectID',
'Barcode',
'Volume',
'Unit',
# 'Location'
]
},
]
from Products.Archetypes.public import DisplayList
from bika.sanbi import bikaMessageFactory as _
PROJECTNAME = "SANBI"
GLOBALS = globals()
INVENTORY_TYPES = DisplayList((
('N', _('None')),
('g', _('Glassware')),
('a', _('Reagents Ambient Temperature')),
('t', _('Reagents Cold Temperature')),
('o', _('Other')),
))
DIMENSION_OPTIONS = DisplayList((
('N', _('None')),
('f', _('One Dimension\t')),
('s', _('Two Dimension\t')),
))
VOLUME_UNITS = [
{'ResultValue': '1', 'ResultText': 'ml'},
{'ResultValue': '2', 'ResultText': 'kg'}
]
PRICELIST_TYPES = DisplayList((
('AnalysisService', _('Analysis Services')),
('LabProduct', _('Lab Products')),
('KitTemplate', _('Kits')),
('StorageType', _('Sample Storage')),
def __init__(self, context, request):
BikaListingView.__init__(self, context, request)
self.context = context
self.request = request
self.catalog = 'bika_catalog'
request.set('disable_plone.rightcolumn', 1)
self.contentFilter = {
'portal_type': 'Kit',
'sort_on': 'sortable_title',
'sort_order': 'reverse'
}
# Todo: I add these two line to set the sort and the order of kit listing because
# Todo: the values in self.contentFilter seems have no effect!
self.sort_on = 'sortable_title'
self.request.set('list_sort_order', 'reverse')
self.context_actions = {}
self.title = self.context.translate(_("Kits"))
self.icon = self.portal_url + \
"/++resource++bika.sanbi.images/kit_big.png"
self.description = ''
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.pagesize = 25
if self.context.portal_type == 'Kits':
self.request.set('disable_border', 1)
self.columns = {
'Title': {'title': _('Kit Name')},
'Project': {'title': _('Project'),
'toggle': True},
'kitTemplate': {'title': _('Kit template'),
'toggle': True},
'state_title': {'title': _('State'),
'index': 'review_state'},
'sortable_title':{}
}
self.review_states = [
{
'id': 'default',
'title': _('Active'),
'contentFilter': {
'inactive_state': 'active',
},
'transitions': [
{'id': 'deactivate'},
{'id': 'receive_kit'},
{'id': 'process'},
# {'id': 'ship'}
],
'columns': [
'Title',
'Project',
'kitTemplate',
'state_title'
]
},
{
'id': 'shipped',
'title': _('Shipped'),
'contentFilter': {
'review_state': 'shipped',
'sort_on': 'sortable_title',
'sort_order': 'reverse'
},
'transitions': [
{'id': 'deactivate'},
{'id': 'receive_kit'}
],
'columns': [
'Title',
'Project',
'kitTemplate',
'state_title'
]
},
{
'id': 'received',
'title': _('Received'),
'contentFilter': {
'review_state': 'received',
'sort_on': 'sortable_title',
'sort_order': 'reverse'
},
'transitions': [
{'id': 'deactivate'},
{'id': 'process'}
],
'columns': [
'Title',
'Project',
'kitTemplate',
'state_title'
]
},
{
'id': 'processed',
'title': _('Processed'),
'contentFilter': {
'review_state': 'processed',
'sort_on': 'sortable_title',
'sort_order': 'reverse'
},
'transitions': [{'id': 'deactivate'}],
'columns': [
'Title',
'Project',
'kitTemplate',
'state_title'
]
},
{
'id': 'all',
'title': _('All'),
'contentFilter': {
'sort_on': 'sortable_title',
'sort_order': 'reverse'
},
'columns': [
'Title',
'Project',
'kitTemplate',
'state_title'
]
},
]
def __init__(self, context, request):
super(ShipmentsView, self).__init__(context, request)
self.context = context
self.request = request
self.contentFilter = {
'portal_type': 'Shipment',
'sort_on': 'sortable_title'
}
request.set('disable_plone.rightcolumn', 1)
self.context_actions = {}
self.catalog = 'bika_catalog'
self.title = self.context.translate(_("Shipments"))
self.icon = self.portal_url + \
"/++resource++bika.sanbi.images/shipments_big.png"
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.pagesize = 50
if self.context.portal_type == 'Shipments':
self.request.set('disable_border', 1)
self.columns = {
'ShipmentID': {
'title': _('Shipment ID'),
'index': 'sortable_title',
'toggle': True
},
'Project': {
'title': _('Project'),
'toggle': True
},
'Courier': {
'title': _('Courier'),
'toggle': True
},
'TrackingURL': {
'title': _('Tracking URL'),
'toggle': True
},
'ShippingDate': {
'title': _('Shipping Date'),
'toggle': True
},
'state_title': {
'title': _('State'),
'index': 'review_state'
},
}
self.review_states = [
{
'id':
'default',
'title':
_('All'),
'contentFilter': {},
'transitions': [{
'id': 'deactivate'
}, {
'id': 'dispatch_shipment'
}, {
'id': 'receive_shipment'
}, {
'id': 'collect'
}],
'columns': [
'ShipmentID', 'Project', 'Courier', 'TrackingURL',
'ShippingDate', 'state_title'
]
},
{
'id':
'pending',
'title':
_('Pending'),
'contentFilter': {
'review_state': 'pending'
},
'transitions': [{
'id': 'deactivate'
}, {
'id': 'dispatch_shipment'
}],
'columns': [
'ShipmentID', 'Project', 'Courier', 'TrackingURL',
'ShippingDate', 'state_title'
]
},
{
'id':
'dispatched',
'title':
_('Dispatched'),
'contentFilter': {
'review_state': 'dispatched'
},
'transitions': [{
'id': 'deactivate'
}, {
'id': 'receive_shipment'
}],
'columns': [
'ShipmentID', 'Project', 'Courier', 'TrackingURL',
'ShippingDate', 'state_title'
]
},
{
'id':
'received',
'title':
_('Received'),
'contentFilter': {
'review_state': 'received'
},
'transitions': [{
'id': 'deactivate'
}, {
'id': 'collect'
}],
'columns': [
'ShipmentID', 'Project', 'Courier', 'TrackingURL',
'ShippingDate', 'state_title'
]
},
]
from bika.sanbi.interfaces import IKit, IKitStorage
@indexer(IKit)
def get_kit_project_uid(instance):
return instance.getProject().UID()
Project = ReferenceField(
'Project',
required=1,
allowed_types=('Project', ),
relationship='KitProject',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Project"),
catalog_name='bika_catalog',
size=30,
showOn=True,
description=_("Click and select project for the kit."),
))
KitTemplate = ReferenceField(
'KitTemplate',
required=1,
allowed_types=('KitTemplate', ),
relationship='KitAssemblyTemplate',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Kit template"),
size=30,
from bika.lims.browser.widgets import DateTimeWidget
from bika.lims.browser.fields import DateTimeField
from bika.lims.content.bikaschema import BikaSchema
from bika.sanbi import bikaMessageFactory as _
from bika.sanbi.interfaces import IProject
from bika.sanbi import config
from bika.sanbi.browser.widgets import ProjectAnalysesWidget
schema = BikaSchema.copy() + Schema((
StringField(
'StudyType',
searchable=True,
widget=StringWidget(
label=_('Type of study'),
visible={'edit': 'visible', 'view': 'visible'},
)
),
IntegerField(
'AgeHigh',
widget=IntegerWidget(
label=_("Age High"),
description=_("Maximum age of the participants."),
size=10,
visible={'edit': 'visible', 'view': 'visible'},
)
),
IntegerField(
class BikaSetupSchemaExtender(object):
adapts(IBikaSetup)
implements(ISchemaExtender)
fields = [
ExtFixedPointField(
'LevyAmount',
schemata='Accounting',
default='0.00',
widget=DecimalWidget(
label=_("Levy Amount"),
description=
_("The levy percentage the university or parent organisation raises on all invoiced amounts"
),
)),
ExtRecordsField(
'StoragePricing',
schemata='Storage',
subfields=('storage_type', 'price', 'storage_type_uid'),
subfield_hidden={'storage_type_uid': True},
required_subfields=('storage_type', 'price', 'storage_type_uid'),
subfield_sizes={
'storage_type': 50,
'price': 5
},
subfield_labels={
'storage_type': _('Storage Type'),
'price': _('Price')
},
widget=RecordsWidget(
label=_("Storage Pricing"),
description=_(
"Set Sample storage pricing depending on storage type."),
allowDelete=False,
combogrid_options={
'storage_type': {
'colModel': [{
'columnName': 'storage_type',
'width': '30',
'label': _('Title')
}, {
'columnName': 'Description',
'width': '70',
'label': _('Description')
}, {
'columnName': 'storage_type_uid',
'hidden': True
}],
'url':
'getstoragetypes',
'showOn':
True,
'width':
'550px'
},
},
)),
]
def __init__(self, context):
self.context = context
def getFields(self):
return self.fields
from bika.sanbi.interfaces import IKit, IKitStorage
@indexer(IKit)
def get_kit_project_uid(instance):
return instance.getProject().UID()
Project = ReferenceField(
'Project',
required=1,
allowed_types=('Project',),
relationship='KitProject',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Project"),
catalog_name='bika_catalog',
size=30,
showOn=True,
description=_("Click and select project for the kit."),
)
)
KitTemplate = ReferenceField(
'KitTemplate',
required=1,
allowed_types=('KitTemplate',),
relationship='KitAssemblyTemplate',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Kit template"),
def __init__(self, context, request):
super(ShipmentMultifileView, self).__init__(context, request)
self.show_workflow_action_buttons = False
self.title = self.context.translate(_("Shipment Files"))
self.description = "Different interesting documents and files to be attached to the shipment"
class SampleSchemaExtender(object):
adapts(ISample)
implements(IOrderableSchemaExtender)
fields = [
ExtReferenceField('Kit',
vocabulary_display_path_bound=sys.maxint,
allowed_types=('Kit', ),
relationship='SampleKit',
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
label=_("Kit"),
catalog_name='bika_catalog',
visible={
'view': 'invisible',
'edit': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'invisible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
)),
ExtReferenceField('StorageLocation',
allowed_types=('UnmanagedStorage',
'StoragePosition'),
relationship='ItemStorageLocation',
widget=bika_ReferenceWidget(
label=_("Storage Location"),
description=_("Location where item is kept"),
size=40,
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'invisible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
catalog_name='bika_setup_catalog',
showOn=True,
render_own_label=True,
base_query={
'inactive_state':
'active',
'review_state':
'available',
'object_provides':
IBioSpecimenStorage.__identifier__
},
colModel=[{
'columnName': 'UID',
'hidden': True
}, {
'columnName': 'Title',
'width': '50',
'label': _('Title')
}, {
"columnName": "Hierarchy",
"align": "left",
"label": "Hierarchy",
"width": "50"
}],
)),
ExtStringField(
'SubjectID',
searchable=True,
widget=StringWidget(
label=_("Subject ID"),
description=_("Human-subject ID the specimen is taken from."),
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'invisible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
)),
ExtStringField('Barcode',
searchable=True,
widget=StringWidget(
label=_("Barcode"),
description=_("Biospecimen barcode."),
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'invisible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
)),
ExtFixedPointField(
'Volume',
required=1,
default="0.00",
widget=DecimalWidget(
label=_("Volume"),
size=15,
description=_(
"The The volume of the biospecimen taken from the subject."
),
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'visible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
)),
ExtStringField('Unit',
widget=StringWidget(
label=_("Unit"),
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'visible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
)),
ExtReferenceField(
'LinkedSample',
vocabulary_display_path_bound=sys.maxsize,
multiValue=1,
allowed_types=('Sample', ),
relationship='SampleSample',
referenceClass=HoldingReference,
mode="rw",
read_permission=permissions.View,
write_permission=permissions.ModifyPortalContent,
widget=ReferenceWidget(
label=_("Biospecimen"),
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'visible',
'sample_registered': {
'view': 'visible',
'edit': 'invisible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
),
),
ExtDateTimeField(
'DateCreated',
mode="rw",
read_permission=permissions.View,
write_permission=permissions.ModifyPortalContent,
widget=DateTimeWidget(
label=_("Date Created"),
description=_("Define when the sample has been created."),
show_time=True,
visible={
'edit': 'visible',
'view': 'visible',
'header_table': 'invisible',
'sample_registered': {
'view': 'visible',
'edit': 'invisible'
},
'sample_due': {
'view': 'visible',
'edit': 'invisible'
},
'sampled': {
'view': 'visible',
'edit': 'invisible'
},
'sample_received': {
'view': 'visible',
'edit': 'invisible'
},
'expired': {
'view': 'visible',
'edit': 'invisible'
},
'disposed': {
'view': 'visible',
'edit': 'invisible'
},
},
render_own_label=True,
),
),
]
def __init__(self, context):
self.context = context
def getOrder(self, schematas):
return schematas
def getFields(self):
return self.fields
def __init__(self, context, request):
super(ShipmentsView, self).__init__(context, request)
self.context = context
self.request = request
self.contentFilter = {"portal_type": "Shipment", "sort_on": "sortable_title"}
request.set("disable_plone.rightcolumn", 1)
self.context_actions = {}
self.catalog = "bika_catalog"
self.title = self.context.translate(_("Shipments"))
self.icon = self.portal_url + "/++resource++bika.sanbi.images/shipments_big.png"
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = True
self.pagesize = 50
if self.context.portal_type == "Shipments":
self.request.set("disable_border", 1)
self.columns = {
"ShipmentID": {"title": _("Shipment ID"), "index": "sortable_title", "toggle": True},
"Project": {"title": _("Project"), "toggle": True},
"Courier": {"title": _("Courier"), "toggle": True},
"TrackingURL": {"title": _("Tracking URL"), "toggle": True},
"ShippingDate": {"title": _("Shipping Date"), "toggle": True},
"state_title": {"title": _("State"), "index": "review_state"},
}
self.review_states = [
{
"id": "default",
"title": _("All"),
"contentFilter": {},
"transitions": [
{"id": "deactivate"},
{"id": "dispatch_shipment"},
{"id": "receive_shipment"},
{"id": "collect"},
],
"columns": ["ShipmentID", "Project", "Courier", "TrackingURL", "ShippingDate", "state_title"],
},
{
"id": "pending",
"title": _("Pending"),
"contentFilter": {"review_state": "pending"},
"transitions": [{"id": "deactivate"}, {"id": "dispatch_shipment"}],
"columns": ["ShipmentID", "Project", "Courier", "TrackingURL", "ShippingDate", "state_title"],
},
{
"id": "dispatched",
"title": _("Dispatched"),
"contentFilter": {"review_state": "dispatched"},
"transitions": [{"id": "deactivate"}, {"id": "receive_shipment"}],
"columns": ["ShipmentID", "Project", "Courier", "TrackingURL", "ShippingDate", "state_title"],
},
{
"id": "received",
"title": _("Received"),
"contentFilter": {"review_state": "received"},
"transitions": [{"id": "deactivate"}, {"id": "collect"}],
"columns": ["ShipmentID", "Project", "Courier", "TrackingURL", "ShippingDate", "state_title"],
},
]
def __init__(self, context, request):
super(ShipmentMultifileView, self).__init__(context, request)
self.show_workflow_action_buttons = False
self.title = self.context.translate(_("Shipment Files"))
self.description = "Different interesting documents and files to be attached to the shipment"
schema = BikaFolderSchema.copy() + BikaSchema.copy() + Schema((
ReferenceField(
'FromContact',
required=1,
vocabulary='get_project_client_contacts',
vocabulary_display_path_bound=sys.maxsize,
allowed_types=('LabContact',),
referenceClass=HoldingReference,
relationship='ShipmentLabContact',
mode="rw",
read_permission=permissions.View,
widget=bika_ReferenceWidget(
label=_("From Contact"),
description=_("Laboratory contact sending this shipment."),
size=30,
base_query={'inactive_state': 'active'},
showOn=True,
popup_width='400px',
colModel=[{'columnName': 'UID', 'hidden': True},
{'columnName': 'Fullname', 'width': '50', 'label': _('Name')},
{'columnName': 'EmailAddress', 'width': '50', 'label': _('Email Address')},
],
),
),
ReferenceField(
'ToContact',
required=1,
vocabulary='get_project_client_contacts',
def __init__(self, context, request):
super(StorageUnitInventoryView, self).__init__(context, request)
self.contentFilter['getUnitID'] = context.getId()
self.context_actions = {_('Add'):
{'url': 'createObject?type_name=StorageInventory',
'icon': '++resource++bika.lims.images/add.png'}}
def __init__(self, context, request):
super(AliquotsView, self).__init__(context, request)
self.context = context
self.request = request
self.catalog = "bika_catalog"
self.contentFilter = {
'portal_type': 'Sample',
'sort_on': 'sortable_title'
}
# self.sort_on = 'Title'
self.context_actions = {}
self.title = self.context.translate(_("Aliquots"))
self.icon = self.portal_url + \
"/++resource++bika.sanbi.images/aliquot_big.png"
self.description = ""
self.show_sort_column = False
self.show_select_row = False
self.show_select_column = False
self.pagesize = 50
request.set('disable_plone.rightcolumn', 1)
self.allow_edit = True
if self.context.portal_type == 'Aliquots':
self.request.set('disable_border', 1)
self.columns = {
'Title': {
'title': _('Aliquot'),
'index': 'sortable_title'
},
'Biospecimen': {
'title': _('Biospecimen'),
'toggle': True
},
'AliquotType': {
'title': _('Aliquot Type'),
'toggle': True
},
'Volume': {
'title': _('Volume'),
'toggle': True,
'input_width': '7'
},
'Unit': {
'title': _('Unit'),
'toggle': True,
'input_width': '15'
},
'Project': {
'title': _('Project'),
'index': 'sortable_title'
},
'state_title': {
'title': _('State'),
'index': 'review_state'
},
# 'Location': {'title': _('Location'),
# 'toggle': True},
}
self.review_states = [
{
'id': 'default',
'title': _('Active'),
'contentFilter': {
'cancellation_state': 'active',
'sort_order': 'ascending'
},
'transitions': [
{'id': 'receive'},
{'id': 'cancel'}
],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'sample_due',
'title': _('Sample Due'),
'contentFilter': {
'review_state': 'sample_due',
'sort_order': 'ascending'
},
'transitions': [
{'id': 'receive'},
{'id': 'cancel'}
],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'sample_received',
'title': _('Received'),
'contentFilter': {
'review_state': 'sample_received'
},
'transitions': [
{'id': 'cancel'},
],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'cancelled',
'title': _('Cancelled'),
'contentFilter': {
'cancellation_state': 'cancelled'
},
'transitions': [
{'id': 'reinstate'},
],
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
'state_title',
# 'Location'
]
},
{
'id': 'all',
'title': _('All'),
'contentFilter': {},
'columns': [
'Title',
'Project',
'Biospecimen',
'AliquotType',
'Volume',
'Unit',
# 'Location'
]
}
]
from bika.sanbi.config import PROJECTNAME
from bika.lims.content.bikaschema import BikaSchema
from bika.sanbi.interfaces import IBiospecType
from Products.Archetypes.public import *
from zope.interface import implements
from bika.sanbi.browser.widgets import ProjectAnalysesWidget
from bika.sanbi import bikaMessageFactory as _
schema = BikaSchema.copy() + Schema((
ReferenceField('Service',
required=1,
multiValued=1,
allowed_types=('AnalysisService',),
relationship='BiospecimenAnalysisService',
widget=ProjectAnalysesWidget(
label=_("Analyse Services"),
description=_("Multi-checkboxes table. Use the suitable services for the current "
"biospecimen-type"),
)),
))
schema['description'].widget.visible = True
schema['description'].schemata = 'default'
class BiospecType(BaseContent):
implements(IBiospecType)
security = ClassSecurityInfo()
displayContentsTab = False
schema = schema
_at_rename_after_creation = True
@indexer(IAliquot)
def get_aliquot_project_uid(instance):
return instance.getBiospecimen().getKit().getProject().UID()
schema = BikaSchema.copy() + Schema((
ReferenceField(
'Biospecimen',
required=1,
allowed_types=('Biospecimen',),
relationship='BiospecimenAliquot',
vocabulary_display_path_bound=sys.maxsize,
referenceClass=HoldingReference,
widget=bika_ReferenceWidget(
checkbox_bound=0,
label=_("Biospecimen"),
description=_("The biospecimen the aliquot is extracted from."),
size=40,
catalog_name='bika_setup_catalog',
showOn=True,
visible={'edit': 'visible', 'view': 'visible'},
)
),
FixedPointField(
'Volume',
required=1,
default="0.00",
widget=DecimalWidget(
label=_("Volume"),
size=15,
