def setUp(self, unused):
self.evaluator = ArticleMccEvaluation()
for attr in C.HITS_ATTRIBUTES:
setattr(self.evaluator.hits, attr, 2)
self.evaluator.hits.sum.return_value = 8
class ArticleMccEvaluationTest(CalculationAssertions):
@patch('biocreative.evaluation.calculation.hits.Hits', spec=True)
def setUp(self, unused):
self.evaluator = ArticleMccEvaluation()
for attr in C.HITS_ATTRIBUTES:
setattr(self.evaluator.hits, attr, 2)
self.evaluator.hits.sum.return_value = 8
def test_properties(self):
for name in ("specificity", "sensitivity"):
self.assert_property(name, 0.5)
self.assertFalse(self.evaluator.hits.sum.called)
self.assert_property("accuracy", 0.5)
self.assertTrue(self.evaluator.hits.sum.called) # by accuracy
self.evaluator.hits.tp += 1 # so MCC doesn't produce 0
self.assert_property("mcc_score", 2.0 / sqrt(5*5*4*4))
def test_evaluate_with_tp_item(self):
self.evaluate_with(True, True, 'tp')
def test_evaluate_with_fp_item(self):
self.evaluate_with(True, False, 'fp')
def test_evaluate_with_fn_item(self):
self.evaluate_with(False, True, 'fn')
def test_evaluate_with_tn_item(self):
self.evaluate_with(False, False, 'tn')
def test_evaluate_with_illegal_result_item_raises_assertion_error(self):
self.assertRaises(
AssertionError, self.evaluator.evaluate, 1, True, None
)
def test_evaluate_with_illegal_std_item_raises_assertion_error(self):
self.assertRaises(
AssertionError, self.evaluator.evaluate, True, 1, None
)
def evaluate_with(self, result, std, attr):
self.evaluator.evaluate(result, std, None)
self.evaluator.hits.add_to.assert_called_with(attr, 1)
