class DBUpdater:
def __init__(self, db_name, protocol="http", source=""):
self.db_name= db_name
fantom_tmp_path= os.path.join(fantom_tmp_dir, '%s.txt' % db_name)
urls= all_db_urls[db_name]
self.download_manager= DownloadManager(db_name, download_dir, protocol, urls)
self.parser = Parser(db_name, fantom_tmp_path, self.download_manager, source)
self.updater= BioDBUpdater(db_name, sql_db_path, fantom_tmp_path )
def run(self):
print "Downloading the database..."
self.download_manager.download()
print "Parsing files..."
self.parser.parse()
print "Updating sqlite database..."
self.updater.store_database()
def stats(self):
self.n_ids=""
self.n_levels=""
def __init__(self, db_name, protocol="http", source=""):
self.db_name= db_name
fantom_tmp_path= os.path.join(fantom_tmp_dir, '%s.txt' % db_name)
urls= all_db_urls[db_name]
self.download_manager= DownloadManager(db_name, download_dir, protocol, urls)
self.parser = Parser(db_name, fantom_tmp_path, self.download_manager, source)
self.updater= BioDBUpdater(db_name, sql_db_path, fantom_tmp_path )