def step(self, mcs):
pass
#type here the code that will run every _frequency MCS
for cell in self.cellList:
if cell.type == self.NONCONDENSING:
state = bionetAPI.getBionetworkState(cell.id, 'OSCLI')
concentration = state['S1']
# print "concentration=",concentration
cell.targetVolume = 25 + 10 * concentration
bionetAPI.timestepBionetworks()
def step(self,mcs):
pass
#type here the code that will run every _frequency MCS
for cell in self.cellList:
if cell.type==self.NONCONDENSING:
state=bionetAPI.getBionetworkState(cell.id,'OSCLI')
concentration=state['S1']
# print "concentration=",concentration
cell.targetVolume=25+10*concentration
bionetAPI.timestepBionetworks()
def step(self,mcs):
for cell in self.cellList:
if (cell):
D=0.0; nn=0
cellNeighborList=self.getCellNeighbors(cell)
for neighbor in cellNeighborList:
if (neighbor.neighborAddress):
nn+=1
state=bionetAPI.getBionetworkState(neighbor.neighborAddress.id,'DeltaNotch')
D+=state['D']
if (nn>0):
D=D/nn
state={}
state['Davg']=D
bionetAPI.setBionetworkState(cell.id,'DeltaNotch',state)
state=bionetAPI.getBionetworkState(cell.id,'DeltaNotch')
cell.dict['D']=D
cell.dict['N']=state['N']
bionetAPI.timestepBionetworks()
def step(self,mcs):
if not self.pW:
self.initPlot()
print "PlotsSteppable: This function is called every 10 MCS"
for cell in self.cellList:
if cell.type==self.NONCONDENSING:
state=bionetAPI.getBionetworkState(cell.id,'OSCLI')
concentration=state['S1']
#self.pW.eraseAllData() # this is how you erase previous content of the plot
self.pW.addDataPoint("DATA_SERIES_1",mcs,concentration) # arguments are (name of the data series, x, y)
print "concentration=",concentration
break
self.pW.showAllPlots()
def step(self, mcs):
if not self.pW:
self.initPlot()
print "PlotsSteppable: This function is called every 10 MCS"
for cell in self.cellList:
if cell.type == self.NONCONDENSING:
state = bionetAPI.getBionetworkState(cell.id, 'OSCLI')
concentration = state['S1']
#self.pW.eraseAllData() # this is how you erase previous content of the plot
self.pW.addDataPoint(
"DATA_SERIES_1", mcs, concentration
) # arguments are (name of the data series, x, y)
print "concentration=", concentration
break
self.pW.showAllPlots()
