def test_get_names(self):
lav_marker_list = blastz_NLMSA.find_lavmarkers(self.buf)
lav_coords = blastz_NLMSA.construct_coord(lav_marker_list)
for coord in lav_coords:
start_index = int(coord[0])
end_index = int(coord[1])
lav_block = self.buf[start_index:end_index]
records = lav_block.split("\n}\n")
self.assertEqual(blastz_NLMSA.get_names(records), ["testgenome1", "testgenome2"])
def test_construct_coord(self):
lavmarkers_list = blastz_NLMSA.find_lavmarkers(self.buf)
self.assertEqual(blastz_NLMSA.construct_coord(lavmarkers_list), [(218, 490)])
def test_find_lav_marker(self):
self.assertEqual(len(blastz_NLMSA.find_lavmarkers(self.buf)), 2)