def parse_args(xvar='laps', yvar='evidence'):
''' Returns Namespace of parsed arguments retrieved from command line
'''
parser = argparse.ArgumentParser()
parser.add_argument('dataName', type=str, default='AsteriskK8')
parser.add_argument('jpath', type=str, default='demo*')
parser.add_argument('--xvar', type=str, default=xvar,
choices=list(LabelMap.keys()),
help="name of x axis variable to plot.")
parser.add_argument('--yvar', type=str, default=yvar,
#choices=LabelMap.keys(),
help="name of y axis variable to plot.")
helpMsg = "ids of trials/runs to plot from given job." + \
" Example: '4' or '1,2,3' or '2-6'."
parser.add_argument(
'--taskids', type=str, default=None, help=helpMsg)
parser.add_argument(
'--savefilename', type=str, default=None,
help="location where to save figure (absolute path directory)")
args, unkList = parser.parse_known_args()
argDict = BNPYArgParser.arglist_to_kwargs(unkList, doConvertFromStr=False)
argDict.update(args.__dict__)
argDict['jpathPattern'] = os.path.join(os.environ['BNPYOUTDIR'],
args.dataName,
args.jpath)
del argDict['dataName']
del argDict['jpath']
return argDict
def parse_args():
''' Returns Namespace of parsed arguments retrieved from command line
'''
parser = argparse.ArgumentParser()
parser.add_argument('dataName', type=str, default='AsteriskK8')
parser.add_argument('jpath', type=str, default='demo*')
helpMsg = "ids of trials/runs to plot from given job." + \
" Example: '4' or '1,2,3' or '2-6'."
parser.add_argument(
'--taskids',
type=str, default=None,
help=helpMsg)
parser.add_argument(
'--savefilename', type=str, default=None,
help="location where to save figure (absolute path directory)")
parser.add_argument('--fileSuffix', type=str, default='PredLik.mat')
args, unkList = parser.parse_known_args()
argDict = BNPYArgParser.arglist_to_kwargs(unkList)
argDict.update(args.__dict__)
argDict['jpathPattern'] = os.path.join(os.environ['BNPYOUTDIR'],
args.dataName,
args.jpath)
del argDict['dataName']
del argDict['jpath']
return argDict
def parse_args(**kwargs):
''' Returns Namespace of parsed arguments retrieved from command line
'''
parser = argparse.ArgumentParser()
parser.add_argument('dataName', type=str, default='AsteriskK8')
parser.add_argument('jpathPattern', type=str, default='demo*')
parser.add_argument('--xvar', type=str, default=None,
help="name of x axis variable to plot.")
parser.add_argument('--yvar', type=str, default='evidence',
choices=list(LabelMap.keys()),
help="name of y axis variable to plot.")
parser.add_argument('--lvar', type=str, default=None,
help="quantity that varies across lines")
parser.add_argument('--pvar', type=str, default=None,
help="quantity that varies across subplots")
parser.add_argument('--taskids', type=str, default='all',
help="specify which task to plot (all, .best, .worst, etc)")
parser.add_argument(
'--savefilename', type=str, default=None,
help="location where to save figure (absolute path directory)")
args, unkList = parser.parse_known_args()
argDict = BNPYArgParser.arglist_to_kwargs(unkList)
argDict.update(args.__dict__)
argDict.update(kwargs)
argDict['jpathPattern'] = os.path.join(os.environ['BNPYOUTDIR'],
args.dataName,
args.jpathPattern)
del argDict['dataName']
for key in argDict:
if key.endswith('vals'):
if not isinstance(argDict[key], list):
argDict[key] = argDict[key].split(',')
return argDict
legNames = ['%s=%s' % (plotkey, x) for x in RangeMap[plotkey]]
# Build list of final jpaths in order of decided legend
keepListFinal = list()
for x in RangeMap[plotkey]:
for jID, jdict in enumerate(keepListD):
if jdict[plotkey] == x:
keepListFinal.append(keepListP[jID])
else:
keepListFinal = keepListP[:1]
legNames = [None]
if verbose:
print('\nLegend entries for selected jobs (auto-selected)')
for name in legNames:
print(name)
return keepListFinal, legNames
if __name__ == '__main__':
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('dataName', default='AsteriskK8')
parser.add_argument('jobName', default='bm')
args, unkList = parser.parse_known_args()
reqDict = BNPYArgParser.arglist_to_kwargs(unkList, doConvertFromStr=False)
jpath = os.path.join(os.environ['BNPYOUTDIR'], args.dataName, args.jobName)
keepJobs, legNames = filterJobs(jpath, verbose=1, **reqDict)
