def _internal_bokeh(doc, example=None):
from bokeh.layouts import row
import asyncio
async def clock_retrieve(period_secs: float, ttyout=False) -> None:
import asyncio
while True:
await asyncio.sleep(period_secs)
clock(period_secs=None, ttyout=ttyout) # calling itself synchronously
# tick always in background but we retrieve its measurement every second.
asyncio.get_running_loop().create_task(clock_retrieve(period_secs=1, ttyout=True))
# TODO : turn off retrieval when document is detached ?
clocksourceview = inspect.getsource(Clock)
thissourceview = inspect.getsource(_internal_bokeh)
doc.add_root(
grid(
[
[PreText(text=clocksourceview), PreText(text=thissourceview)],
# to help compare / visually debug
[clock[["minute", "second"]].plot, clock[["minute", "second"]].table],
# Note : even if we create multiple clock instances here,
# the model is the same, and propagation will update all datasources...
]
)
)
def build_choropleth_doc(cpleth_df_instances: List[pd.DataFrame], county_date_instances: List,
debug_mode: bool = False) -> None:
df_instances, states = build_cpleth_df(cpleth_df_instances)
curdoc().clear()
national_cpleth_sources, cpleth_sources, stateplot, nationalplots = build_cpleth_plot_df(states, df_instances)
ttldiv = Div(text="""Effective Reproduction Number ( R<sub>t</sub> )""", orientation='vertical',
height_policy='min',
width_policy='min', css_classes=['cbar_title'], align='center')
ttldiv.visible = True
menu = []
for full_name, state in zip(constants.full_names, states):
menu.append((state, full_name))
select = Select(title="", value="Choose", options=menu, name='state_select', css_classes=['bk_select'],
width_policy='min', background=None)
someargs = dict(plot=stateplot, select=select, ttldiv=ttldiv, cpleth_sources=cpleth_sources)
select_callback = CustomJS(args=someargs, code=constants.select_callback_code)
select.js_on_change('value', select_callback)
row_layout = row(stateplot, ttldiv)
gridlayout = grid([
[select],
[row_layout]
])
if not debug_mode:
for i, natp in enumerate(nationalplots):
gen_national_imgs(i, natp, county_date_instances)
script, div = components([gridlayout])
covid_utils.save_bokeh_tags([div[0], script], config.choro_covid_explorer_tags)
else:
show(gridlayout)
def __init__(self):
"""Create text field and empty plotting grid."""
self.file_input = TextInput(placeholder='Enter file path')
self.layout = grid([], ncols=2)
self.i = 0
self.j = 0
def print_tab(df, titre):
grid_ = grid(
children=[print_table(df)],
sizing_mode="stretch_width",
)
return bokeh.models.Panel(child=grid_, title=titre)
def build_dashboard_doc(rt_df: pd.DataFrame, status_df: pd.DataFrame, debug_mode: bool = False) \
-> Tuple[pd.DataFrame, pd.DataFrame, pd.DataFrame, pd.Index]:
# define core document objects
curdoc().clear()
primary_rt_plot_df, counties_df, main_plot_df, counties, status_df = build_dashboard_dfs(rt_df, status_df)
default_county = counties.tolist()[0]
patchsources = build_patchsources(counties, counties_df)
countytable, countytable_cds = build_countytable(status_df)
rtsource = ColumnDataSource(counties_df)
rtplot, plots, ms_plot, choices = build_dynamic_plots(constants.cust_rg_palette, patchsources, rtsource, counties,
default_county)
set_tbl_logic(rtsource, choices, patchsources, countytable_cds, rtplot, plots, ms_plot)
# set initial default
plots = [p['plot'] for p in plots]
plots.extend([rtplot, ms_plot])
set_plots_blank(plots)
gridlayout = grid([
[None, None, choices],
[plots[1], plots[0], plots[2]],
[countytable]
])
if not debug_mode:
script, div = components([gridlayout])
covid_utils.save_bokeh_tags([div[0], script], config.county_covid_explorer_tags)
else:
show(gridlayout)
return primary_rt_plot_df, counties_df, main_plot_df, counties
def _build_figure(self, file_path, figure_matrix):
# Make figure matrix html file and embed
file_name = 'integrated_scatterplot_output.html'
figure_html_path = os.path.join(file_path, file_name)
output_file(figure_html_path)
save(grid(figure_matrix))
return file_name
def show_plot(self):
"""
:return:
"""
l = grid([
row([
column([self.map, self.plot, self.slider]),
column([*[t.layout for t in self.text_inputs], self.text])])],
sizing_mode='stretch_both')
show(l)
def generate_tabbed_output(self):
self.patient_graph()
tab_bicarb, tab_chloride = self.graphs['Patient']
tab_bicarb.plot_width = 800
tab_chloride.plot_width = 800
panel_bicarb = Panel(child=tab_bicarb, title="Bicarbonate Transport")
panel_chloride = Panel(child=tab_chloride, title="Chloride Transport")
tabs = Tabs(tabs=[panel_bicarb, panel_chloride], width=1000)
var_menu = self.gen_var_menu()
widget_column, widgets = self.process_widgets(var_menu)
layout = grid([[widget_column, tabs]])
return layout, widgets, tab_bicarb, tab_chloride
def callback(attr, old, new):
layout.children[1] = grid([
create_figure1(),
create_figure2(),
create_figure3(),
create_figure4(),
create_figure5()
],
ncols=2)
callback = CustomJS(code="console.log('tap event occurred')")
def show_model_introspect(model,
tr_data,
tr_data_ind,
val_data,
val_data_ind,
device,
n_sampl=3,
n_lat_sampl=300,
fix_fig=True):
fig1, fig2, fig3, fig4, fig5, fig6 = get_model_introspect(
model, tr_data, tr_data_ind, val_data, val_data_ind, device, n_sampl,
n_lat_sampl, fix_fig)
show(grid([[fig1, fig2], [fig3, fig4], [fig5, fig6]]))
def month(month):
f'''
# Month: {month}
'''
'''
$contents
'''
'''
## Preparation
'''
s = session('-v2')
output_file(filename='/dev/null')
map_size = 100
month_start = to_date(month).replace(day=1)
'''
## Generate Plot
'''
def days():
for i in Calendar().iterweekdays():
yield Div(text=f'<h2>{day_name[i]}</h2>')
day = month_start - dt.timedelta(days=month_start.weekday())
while day.month <= month_start.month:
for weekday in range(7):
if day.month == month_start.month:
contents = [Div(text=f'<h1>{day.strftime("%d")}</h1>')]
for a in s.query(ActivityJournal). \
filter(ActivityJournal.start >= local_date_to_time(day),
ActivityJournal.finish < local_date_to_time(day + dt.timedelta(days=1))).all():
df = activity_statistics(s,
SPHERICAL_MERCATOR_X,
SPHERICAL_MERCATOR_Y,
activity_journal=a)
contents.append(
map_thumbnail(map_size, map_size, df, title=False))
df = activity_statistics(s,
ACTIVE_DISTANCE,
ACTIVE_TIME,
activity_journal=a)
contents.append(
Div(text=
f'{format_metres(df[ACTIVE_DISTANCE][0])} {format_seconds(df[ACTIVE_TIME][0])}'
))
else:
contents = [Spacer()]
yield column(contents)
day += dt.timedelta(days=1)
show(grid(list(days()), ncols=7))
def get_layout(self):
"""Return the complete bokeh layout."""
tabs = self.get_tab_layout()
tab_kwargs = {
'Data': [
'text_index_selection',
('select_all_button', 'deselect_all_button'),
'pressure_slider', 'text_multi_serie_flagging',
'parameter_selector', 'multi_flag_widget'
],
'Metadata': [
'text_meta', 'comnt_visit', 'comnt_visit_button', 'comnt_samp',
'comnt_samp_selector', 'comnt_samp_button'
],
'Info': ['info_block']
}
if not self.as_standalone:
tab_kwargs['Import'] = ['text_import', 'file_button']
tab_kwargs['Export'] = ['text_export', 'download_button']
meta_tabs = self.get_tabs(**tab_kwargs)
std_parameter_tabs = self.get_std_parameter_tab_layout()
widgets_1 = column(
[self.month_selector, self.spacer, self.selected_series],
sizing_mode="fixed",
height=400,
width=200)
widgets_2 = column([Spacer(height=10, width=125)],
sizing_mode="fixed",
height=10,
width=125)
widgets_3 = column([meta_tabs],
sizing_mode="stretch_both",
height=100,
width=100)
return grid([
row([self.map, widgets_1, widgets_2, widgets_3]),
row([*std_parameter_tabs, column([tabs])])
])
offset_slider.js_on_change('value', callback)
widgets = column(amp_slider, freq_slider, phase_slider, offset_slider)
return [widgets, plot]
def linked_panning():
N = 100
x = np.linspace(0, 4 * np.pi, N)
y1 = np.sin(x)
y2 = np.cos(x)
y3 = np.sin(x) + np.cos(x)
s1 = figure(tools=tools)
s1.circle(x, y1, color="navy", size=8, alpha=0.5)
s2 = figure(tools=tools, x_range=s1.x_range, y_range=s1.y_range)
s2.circle(x, y2, color="firebrick", size=8, alpha=0.5)
s3 = figure(tools='pan, box_select', x_range=s1.x_range)
s3.circle(x, y3, color="olive", size=8, alpha=0.5)
return [s1, s2, s3]
l = grid([
bollinger(),
slider(),
linked_panning(),
],
sizing_mode='stretch_both')
show(l)
packet_id = str(entry[0])
packet_val = get_packet_val(metadata, packet_id, entry[1:5])
packet_ts = get_packet_ts(entry[5:9])
packet_module = str(entry[-1])
channel_id = '%s;%s' % (packet_id, packet_module)
channel = channels.get(channel_id, None)
if not channel:
channel = {
'name': metadata['ids'][packet_id]['name'],
'x': [],
'y': []
}
channels[channel_id] = append_time_val(channel, packet_ts, packet_val)
print('Done loading. Generating plots..')
row = 0
for channel in channels:
if len(figures[row]) == 4:
figures.append([])
row += 1
channel_id, channel_origin = channel.split(';')
new_fig = figure(width=350, height=350, title='%s:%s, module: %s' % (channel_id, channels[channel]['name'], modules[int(channel_origin)]))
new_fig.line(channels[channel]['x'], channels[channel]['y'])
figures[row].append(new_fig)
# For generating html file
output_file('%s.html' % sys.argv[1])
show(grid(figures))
# For serving plots from web server
#curdoc().add_root(grid(figures))
options = dict(tools="", toolbar_location=None, plot_height=300, plot_width=300, sizing_mode="fixed")
p1 = figure(title="Line (300 x 100)", **options)
p1.plot_height = 100
p1.line(x, y)
p2 = figure(title="Annular wedge (100 x 300)", title_location='right', **options)
p2.plot_width = 200
p2.annular_wedge(x, y, 10, 20, 0.6, 4.1, inner_radius_units="screen", outer_radius_units="screen")
p3 = figure(title="Bezier (300 x 300)", **options)
p3.bezier(x, y, x + 0.4, y, x + 0.1, y + 0.2, x - 0.1, y - 0.2)
p4 = figure(title="Quad (300 x 300)", **options)
p4.quad(x, x - 0.2, y, y - 0.2)
paragraph = Paragraph(text="We build up a grid plot manually. Try changing the mode of the plots yourself.")
select = Select(title="Sizing mode", value="fixed", options=list(SizingMode), width=300)
plots = grid([[None, p1, None], [p2, p3, p4]])
layout = column([paragraph, select, plots])
select.js_link('value', p1, 'sizing_mode')
select.js_link('value', p2, 'sizing_mode')
select.js_link('value', p3, 'sizing_mode')
select.js_link('value', p4, 'sizing_mode')
select.js_link('value', layout, 'sizing_mode')
show(layout)
s1 = figure(plot_width=450, plot_height=420, title=title)
s1.vbar(returns['Rank'], width=0.5, top=returns['Return'])
s1.line(returns['Rank'], returns['Pred'], line_color='red')
s1.xaxis.axis_label = 'Symbol Rank'
s1.yaxis.axis_label = 'Following Month Return'
s2 = figure(x_range=distro['Symbol'],
plot_width=450,
plot_height=420,
title="Average Allocation by Symbol")
s2.vbar(distro['Symbol'], width=0.5, top=distro['Alloc'])
mp = figure(plot_width=650, plot_height=420, title="Model Performance")
dd = figure(plot_width=650, plot_height=420, title="Drawdown")
mp.xaxis.major_label_overrides = {
i: date.strftime('%b %y')
for i, date in enumerate(pd.to_datetime(ref_price['Date']))
}
dd.xaxis.major_label_overrides = {
i: date.strftime('%b %y')
for i, date in enumerate(pd.to_datetime(ref_price['Date']))
}
ref_price.drop(ref_price.index[:lookback], inplace=True)
mp.line(ref_price['ID'], ref_price['SPY_Bal'], line_color='red', legend="SPY")
mp.line(ref_price['ID'], model['End_Bal'], line_color='black', legend="Model")
mp.legend.location = "top_left"
dd.line(ref_price['ID'], model['DD'], line_color='red')
output_file('chart.htm')
l = grid([[para1, corr_grid_display], [s1, mp], [s2, dd]])
show(l, browser=None)
if len(signal) == len(signal_source.data['y']):
signal_source.data['y'] = signal*gain.value
else:
t = np.linspace(0, TIMESLICE, len(signal))
signal_source.data = dict(t=t, y=signal*gain.value)
if len(spectrum) == len(spectrum_source.data['y']):
spectrum_source.data['y'] = spectrum
else:
f = np.linspace(0, MAX_FREQ_KHZ, len(spectrum))
spectrum_source.data = dict(f=f, y=spectrum)
spectrum_plot.x_range.end = freq.value*0.001
alphas = []
for x in bins:
a = np.zeros_like(eq_range)
N = int(ceil(x))
a[:N] = (1 - eq_range[:N]*0.05)
alphas.append(a)
eq_source.data['alpha'] = np.hstack(alphas)
curdoc().add_periodic_callback(update, 80)
controls = row(gain, freq)
plots = grid(column(waterfall_plot, row(column(signal_plot, spectrum_plot), eq)))
curdoc().add_root(desc)
curdoc().add_root(controls)
curdoc().add_root(plots)
freq_slider.js_on_change('value', callback)
phase_slider.js_on_change('value', callback)
offset_slider.js_on_change('value', callback)
widgets = column(amp_slider, freq_slider, phase_slider, offset_slider)
return [widgets, plot]
def linked_panning():
N = 100
x = np.linspace(0, 4 * np.pi, N)
y1 = np.sin(x)
y2 = np.cos(x)
y3 = np.sin(x) + np.cos(x)
s1 = figure(tools=tools)
s1.circle(x, y1, color="navy", size=8, alpha=0.5)
s2 = figure(tools=tools, x_range=s1.x_range, y_range=s1.y_range)
s2.circle(x, y2, color="firebrick", size=8, alpha=0.5)
s3 = figure(tools='pan, box_select', x_range=s1.x_range)
s3.circle(x, y3, color="olive", size=8, alpha=0.5)
return [s1, s2, s3]
l = grid([
bollinger(),
slider(),
linked_panning(),
], sizing_mode='stretch_both')
show(l)
from bokeh.models.tools import HoverTool
from bokeh.models.axes import LinearAxis
from MA import *
import math
renderer = Renderer()
with renderer.measure("render"):
redered_everything = renderer.setup()
# render this document
curdoc().add_root(
row(
grid([[
renderer.seed_plot.left_plot, renderer.nuc_plot.left_plot,
renderer.main_plot.plot
], [None, None, renderer.nuc_plot.bottom_plot],
[None, None, renderer.seed_plot.bottom_plot]]),
column(
row(renderer.widgets.file_input, renderer.widgets.run_id_dropdown,
renderer.widgets.ground_truth_id_dropdown),
renderer.widgets.score_slider,
renderer.widgets.max_elements_slider,
renderer.widgets.range_link_radio,
row(renderer.widgets.full_render_button,
renderer.widgets.render_mems_button,
renderer.widgets.delete_button),
renderer.widgets.force_read_id,
grid([[
renderer.read_plot.nuc_plot.left_plot, renderer.read_plot.plot
], [None, renderer.read_plot.nuc_plot.bottom_plot]
document.body.removeChild(elem);
""",
)
# add Hover tool
# define what is displayed in the tooltip
tooltips = [
("X:", "@x"),
("Y:", "@y"),
("static text", "static text"),
]
fig02.add_tools(HoverTool(tooltips=tooltips))
# display results
# demo linked plots
# demo zooms and reset
# demo hover tool
# demo table
# demo save selected results to file
layout = grid([fig01, fig02, table, savebutton], ncols=3)
output_notebook()
show(layout)
# things to try:
# select random shape of blue dots with lasso tool in 'Select Here' graph
# only selected points appear as red dots in 'Watch Here' graph -- try zooming, saving that graph separately
# selected points also appear in the table, which is sortable
# click the 'Save' button to export a csv
def test_grid():
s0 = Spacer()
s1 = Spacer()
s2 = Spacer()
s3 = Spacer()
s4 = Spacer()
s5 = Spacer()
s6 = Spacer()
g0 = grid([])
assert g0.children == []
g1 = grid(column(s0, row(column(s1, s2, s3, s4, s5), s6)))
assert g1.children == [
(s0, 0, 0, 1, 2),
(s1, 1, 0, 1, 1),
(s2, 2, 0, 1, 1),
(s3, 3, 0, 1, 1),
(s4, 4, 0, 1, 1),
(s5, 5, 0, 1, 1),
(s6, 1, 1, 5, 1),
]
g2 = grid([s0, [[s1, s2, s3, s4, s5], s6]])
assert g2.children == [
(s0, 0, 0, 1, 2),
(s1, 1, 0, 1, 1),
(s2, 2, 0, 1, 1),
(s3, 3, 0, 1, 1),
(s4, 4, 0, 1, 1),
(s5, 5, 0, 1, 1),
(s6, 1, 1, 5, 1),
]
g3 = grid([s0, s1, s2, s3, s4, s5, s6], ncols=2)
assert g3.children == [
(s0, 0, 0, 1, 1),
(s1, 0, 1, 1, 1),
(s2, 1, 0, 1, 1),
(s3, 1, 1, 1, 1),
(s4, 2, 0, 1, 1),
(s5, 2, 1, 1, 1),
(s6, 3, 0, 1, 2),
]
g4 = grid([s0, s1, s2, s3, s4, s5, s6, None], ncols=2)
assert g4.children == [
(s0, 0, 0, 1, 1),
(s1, 0, 1, 1, 1),
(s2, 1, 0, 1, 1),
(s3, 1, 1, 1, 1),
(s4, 2, 0, 1, 1),
(s5, 2, 1, 1, 1),
(s6, 3, 0, 1, 1),
]
with pytest.raises(NotImplementedError):
grid("""
+----+----+----+----+
| s1 | s2 | s3 | |
+---------+----+ s4 |
| s5 | s5 | |
+---------+----+----+
""")
'radar': rt,
'circle': cr.data_source,
'latt': lat3,
'lonn': lon3
},
code=hover_code)
waveforms.add_tools(
HoverTool(tooltips=None,
callback=hover_callback,
renderers=[ln, cr, av, tr]))
# add slider functionality
slider_callback = CustomJS(args={
'track': tr.data_source,
'latt': lat,
'lonn': lon,
'inc': slid_inc
},
code=slider_code)
slider.js_on_change('value', slider_callback)
# create layout to display all figures
p = grid([
[slider],
[waveforms],
[map, ind_wf],
], sizing_mode='fixed')
# display figures
show(p)
def create_app(doc, default_dir=".", update=10):
"""Creates a Bokeh document that the server will display"""
# start loading the dashboard
log.info(f"Creating Bokeh app")
log.debug(f"Default directory: {os.path.realpath(default_dir)}")
log.debug(f"Update rate for mdinfo callback: {update}s")
doc.title = "DashMD"
document = Dashboard(default_dir)
def callback_load_dir(new_value):
if document.anim_button.active:
document.anim_button.label = "â—¼ Stop"
document.anim_button.button_type = "danger"
document.autocomp_results.children = []
global mdinfo_callback
# first update of the dashboard
document.get_mdout_files()
document.parse_mdinfo()
for mdout in document.mdout_files[:document.slider.value]:
document.read_mdout_header(mdout)
document.display_simulations_length()
document.mdinfo_callback = doc.add_periodic_callback(document.update_dashboard, update*1e3)
else:
document.anim_button.label = "â–¶ Load"
document.anim_button.button_type = "success"
doc.remove_periodic_callback(document.mdinfo_callback)
document.anim_button.on_click(callback_load_dir)
# arrange display with tabs
dashboard = Panel(
title="Dashboard",
child=grid([
row([
column([document.md_dir, document.autocomp_results]),
document.anim_button,
]),
row([
column([document.pie]),
column([
document.progressbar,
document.calc_speed,
document.eta,
document.last_update,
document.slider,
]),
]),
row([document.bar]),
row([document.mdout_sel, document.mdout_button]),
], sizing_mode="scale_both")
)
temp_tab = Panel(title="Temperature", child=document.temperature_fig)
press_tab = Panel(title="Pressure", child=document.pressure_fig)
e_tab = Panel(title="Energy", child=document.energy_fig)
vol_tab = Panel(title="Volume", child=document.vol_fig)
dens_tab = Panel(title="Density", child=document.density_fig)
rmsd_tab = Panel(title="RMSD", child=grid([column([
row([document.topology, document.trajectory, document.rmsd_button]),
document.rmsd_fig,
])]))
view_tab = Panel(title="View", child=grid([
column([
row([document.topology, document.trajectory, document.view_button]),
document.view_canvas,
])
]))
tabs = Tabs(tabs=[ dashboard, view_tab, rmsd_tab, temp_tab, press_tab, e_tab, vol_tab, dens_tab])
doc.add_root(tabs)
def modify_document(self, doc):
self.tb.lock()
sink = bokehgui.vec_sink_f_proc(self.tb.get_num_channels(), "", 1)
self.tb.connect((self.mag_to_zW, 0), (sink, 0))
self.tb.unlock()
log_cds = ColumnDataSource(data=self.lw.get_table())
blw = BokehLogWatcher(doc, log_cds)
logging.getLogger().addHandler(blw)
def cleanup_session(session_context):
self.tb.lock()
self.tb.disconnect((self.mag_to_zW, 0), (sink, 0))
self.tb.unlock()
logging.getLogger().removeHandler(blw)
doc.on_session_destroyed(cleanup_session)
doc.title = "Gal Scan GUI"
plot_lst = []
plot = vec_sink_f(doc, plot_lst, sink, is_message=False)
plot.initialize(update_time=100, legend_list=[''])
plot.get_figure().aspect_ratio = 2
plot.set_y_axis([0, 10])
plot.set_y_label("Power at feed (zW / Hz)")
plot.set_x_label("Frequency (MHz)")
def set_x_values():
plot.set_x_values(
np.linspace(
self.tb.get_sdr_frequency() -
(self.tb.get_output_vector_bandwidth() / 2),
self.tb.get_sdr_frequency() +
(self.tb.get_output_vector_bandwidth() / 2),
self.tb.get_num_channels()) / 1e6)
set_x_values()
plot.enable_axis_labels(True)
plot.set_layout(1, 0)
plot.enable_max_hold()
plot.format_line(0, "blue", 1, "solid", None, 1.0)
azimuth = Knob(title="Azimuth", max=360, min=0, unit="°")
elevation = Knob(title="Elevation", max=360, min=0, unit="°")
rx_power = Knob(title="Average RX Power",
digits=4,
decimals=1,
unit="dB(mW/Hz)")
plot.stream.js_on_change(
"streaming",
CustomJS(
args=dict(rx_power=rx_power),
code="""
const data = cb_obj.data
const average = data['y0'].reduce((a,b) => a+b)/data['y0'].length
rx_power.value = (10*Math.log10(average))-180
""",
))
log_table = SortedDataTable(
source=log_cds,
columns=[
TableColumn(field="asctime", title="Time", width=140),
TableColumn(field="levelname", title="Level", width=60),
TableColumn(field="message", title="Message", width=1500),
],
autosize_mode="none",
aspect_ratio=2,
sizing_mode="stretch_width",
sortable=True,
)
gain = Slider(title="gain",
value=self.tb.get_sdr_gain(),
start=0,
end=65)
gain.on_change('value', lambda name, old, new: self.set_gain(new))
rx = ActiveButton(label="RX enabled")
rx.on_click(lambda: self.set_rx(not rx.active))
frequency = Knob(title="center frequency",
writable=True,
value=self.tb.get_sdr_frequency(),
digits=10,
decimals=0,
unit="Hz")
frequency.on_change('value',
lambda name, old, new: self.set_frequency(new))
bandwidth = Knob(title="filter bandwidth",
writable=False,
value=self.tb.get_bandwidth(),
digits=7,
decimals=0,
unit="Hz")
bandwidth.on_change('value',
lambda name, old, new: self.set_bandwidth(new))
reset = Button(label="Reset")
def on_reset():
gain.value = run.flowgraph_defaults['sdr_gain']
frequency.value = run.flowgraph_defaults['sdr_frequency']
bandwidth.value = run.flowgraph_defaults['bandwidth']
reset.on_click(on_reset)
manual = Panel(title="Manual",
child=column(
row(rx, gain),
row(frequency, bandwidth),
reset,
))
run_models = {}
automated_panels = []
for group, args in run.arg_groups.items():
# TODO: show grouping
panel_models = []
for key, arg in args.items():
key = key.replace('-', '_')
bokeh_args = arg.get('bokeh', {})
bokeh_args['name'] = key
bokeh_args['tags'] = ['args']
if 'default' in arg:
bokeh_args['value'] = arg['default']
if 'help' in arg:
bokeh_args['title'] = arg['help']
if 'metavar' in arg:
bokeh_args['title'] += " (%s)" % (arg['metavar'])
type = TextInput
if arg.get('type') in (float, int):
type = Spinner
if 'bokeh' in arg and 'start' in arg[
'bokeh'] and 'end' in arg['bokeh']:
type = Slider
if 'step' not in bokeh_args:
if arg['type'] == int:
bokeh_args['step'] = 1
else:
bokeh_args['step'] = 0.01
if arg.get('metavar') == 'Hz':
if 'digits' not in bokeh_args:
bokeh_args['digits'] = 10
if bokeh_args.get('max'):
bokeh_args['digits'] = len("%d" %
bokeh_args['max'])
type = functools.partial(Knob,
decimals=0,
unit=arg['metavar'])
del bokeh_args['step']
del bokeh_args['tags']
if 'writable' not in bokeh_args:
bokeh_args['writable'] = True
elif 'choices' in arg:
type = Select
bokeh_args['options'] = [str(x) for x in arg['choices']]
if 'value' in bokeh_args:
bokeh_args['value'] = str(bokeh_args['value'])
elif arg.get('action') in ('store_true', 'store_false'):
type = Select
bokeh_args['options'] = [('0', 'False'), ('1', 'True')]
bokeh_args['value'] = str(int(bokeh_args['value']))
bokeh_args['tags'] = ['boolean'] + bokeh_args.get(
'tags', [])
if group.startswith("mode="):
# Make this smarter if we ever have a mode=gal tab
bokeh_args['disabled'] = True
m = type(**bokeh_args)
run_models[key] = m
panel_models.append(m)
automated_panels.append(
Panel(title=group, child=grid(panel_models, ncols=2)))
for panel in automated_panels:
if panel.title.startswith("mode="):
mode_str = panel.title.split('=')[1]
run_models['mode'].js_on_change(
'value',
CustomJS(
args=dict(panel=panel, mode=mode_str),
code=
"""panel.select(Bokeh.require("models/widgets/control").Control).forEach(c => c.disabled = (this.value != mode))""",
))
plan_p = Paragraph(sizing_mode="stretch_width", )
load = UploadButton(name="load-settings",
accept=".json,application/json",
label="Load settings")
def on_load(attr, old, new):
data = json.loads(base64.b64decode(new))
for key, value in data.items():
if isinstance(run_models[key], Select):
value = str(value)
run_models[key].value = value
load.on_change('value', on_load)
save = DownloadButton(label="Save settings",
filename="gal_scan_settings.json",
mime_type="application/json",
data=CustomJS(args=dict(run_models=run_models),
code="""
const out = {}
for (let k in run_models) {
if (!run_models[k].disabled) {
out[k] = run_models[k].value
const tags = run_models[k].tags
if (tags && tags.indexOf("boolean") >= 0) {
out[k] = parseInt(out[k])
}
}
}
return JSON.stringify(out, null, 2);
"""))
start = Button(label="Start scan")
def get_args(output_dir):
return run.parse_args(
[output_dir],
{
k: int(v.value) if "boolean" in v.tags else v.value
for k, v in run_models.items() if not v.disabled
},
)
def on_start():
try:
output_dir = os.path.join(
self.runs_dir, "run_" +
datetime.datetime.now().replace(microsecond=0).isoformat())
args = get_args(output_dir)
self.enqueue_run(args)
except SystemExit:
pass
start.on_click(on_start)
automated = Panel(title="Plan",
child=column(Tabs(tabs=automated_panels), plan_p,
row(load, save, start)))
# TODO: Show cancel buttons for active or queued actions
queue_cds = ColumnDataSource(data=self.get_queue_data())
action_column = ActionMenuColumn(
field="id",
title="Action",
menu=[
("Cancel", "cancel"),
],
)
def on_action_menu_click(event):
if event.item == "cancel":
self.cancel_action(event.value)
else:
logging.warn("Unknown action clicked: %s", event.item)
action_column.on_event(ActionMenuClick, on_action_menu_click)
queue_table = SortedDataTable(
source=queue_cds,
columns=[
TableColumn(
field="time",
title="Time",
formatter=DateFormatter(format="%Y-%m-%d %H:%M:%S"),
),
TableColumn(field="user", title="User"),
TableColumn(field="name", title="Job"),
action_column,
],
highlight_field="active",
sort_ascending=True,
autosize_mode="fit_viewport",
aspect_ratio=2,
sizing_mode="stretch_width",
)
queue = Panel(title="Queue", child=queue_table)
results_cds = ColumnDataSource(data={"name": [], "mtime": []})
results_table = SortedDataTable(
source=results_cds,
columns=[
TableColumn(
field="mtime",
title="Time",
formatter=DateFormatter(format="%Y-%m-%d %H:%M:%S"),
),
TableColumn(
field="name",
title="Name",
formatter=HTMLTemplateFormatter(
template=
'<a href="/runs/<%= value %>/" target="_blank"><%= value %></a>'
)),
],
autosize_mode="fit_viewport",
aspect_ratio=2,
sizing_mode="stretch_width",
sortable=True,
)
results = Panel(title="Results", child=results_table)
tabs = Tabs(tabs=[manual, automated, queue, results])
status_p = Paragraph(sizing_mode="stretch_width", )
controls = column(row(azimuth, elevation, rx_power), status_p, tabs,
log_table)
def get_survey_data():
pointers = {
'ra': [],
'dec': [],
'label': [],
'colour': [],
}
for o in self.messier:
pointers['ra'].append(o['ra'])
pointers['dec'].append(o['dec'])
pointers['label'].append(o['label'])
pointers['colour'].append('')
survey = self.active_action.get('survey')
out = {
'pointers': pointers,
'status_message': 'Idle',
'plan_message': 'Invalid parameters'
}
if survey:
groups = survey.coord_groups
i = 0
for sc, colour in zip(reversed(groups),
('rgb(0, 192, 0)', 'rgb(192, 0, 0)')):
sc = sc.icrs
for sc in sc:
pointers['ra'].append(sc.ra.to(u.degree).value)
pointers['dec'].append(sc.dec.to(u.degree).value)
pointers['label'].append(str(i + 1))
pointers['colour'].append(colour)
i += 1
out['status_message'] = 'Time remaining on current survey: %s' % (
survey.time_remaining.to_datetime())
survey = None
try:
survey = run.Survey(get_args('bogus'))
out['plan_message'] = 'Estimated runtime: %s' % (
survey.time_remaining.to_datetime())
if tabs.tabs[tabs.active] == automated:
# TODO: Use the underlying numpy arrays
sc = survey.iterator.coords_now.icrs
for i, sc in enumerate(sc[:1000]):
pointers['ra'].append(sc.ra.to(u.degree).value)
pointers['dec'].append(sc.dec.to(u.degree).value)
pointers['label'].append(str(i + 1))
pointers['colour'].append('rgb(148,0,211)')
except:
logging.getLogger('stderr').exception('Invalid parameters')
return out
sd = get_survey_data()
pointers_cds = ColumnDataSource(data=sd['pointers'])
def update_pointers(attr, old, new):
logging.debug('Updating pointers')
sd = get_survey_data()
pointers_cds.data = sd['pointers']
plan_p.text = sd['plan_message']
status_p.text = sd['status_message']
update_pointers(None, None, None)
log_cds.on_change('data', update_pointers)
tabs.on_change('active', update_pointers)
for m in run_models.values():
m.on_change('value', update_pointers)
skymap = Skymap(
height=600,
sizing_mode="stretch_height",
pointer_data_source=pointers_cds,
)
skymap.on_event(Tap, lambda event: self.point(event.x, event.y))
doc.add_root(row(
column(
skymap,
plot.get_figure(),
),
controls,
), )
async def update_status(last_status={}):
set_x_values()
status = self.client.status
skymap.latlon = (status['Latitude'], status['Longitude'])
skymap.azel = (status['AzPos'], status['ElPos'])
if status['CommandAzFlags'] == 'POSITION' or status[
'CommandElFlags'] == 'POSITION':
skymap.targetAzel = (status['CommandAzPos'],
status['CommandElPos'])
else:
skymap.targetAzel = None
azimuth.value = status['AzPos']
elevation.value = status['ElPos']
rx_active = status['Sequencer']['Bands'][0]['CommandRX']
if not last_status or rx_active != last_status['Sequencer'][
'Bands'][0]['CommandRX']:
if rx_active:
rx.label = "RX enabled"
else:
rx.label = "RX disabled (50Ω load)"
rx.active = rx_active
queue_data = self.get_queue_data()
if queue_cds.data != queue_data:
queue_cds.data = queue_data
with os.scandir(self.runs_dir) as it:
files = list(
sorted(it, reverse=True, key=lambda f: f.stat().st_mtime))
results_data = {
"name": [f.name for f in files],
"mtime": [int(f.stat().st_mtime * 1000) for f in files],
}
if results_data != results_cds.data:
results_cds.data = results_data
last_status.update(status)
doc.add_periodic_callback(update_status, 200)
4.1,
inner_radius_units="screen",
outer_radius_units="screen")
p3 = figure(title="Bezier (300 x 300)", **options)
p3.bezier(x, y, x + 0.4, y, x + 0.1, y + 0.2, x - 0.1, y - 0.2)
p4 = figure(title="Quad (300 x 300)", **options)
p4.quad(x, x - 0.2, y, y - 0.2)
paragraph = Paragraph(
text=
"We build up a grid plot manually. Try changing the mode of the plots yourself."
)
select = Select(title="Sizing mode",
value="fixed",
options=list(SizingMode),
width=300)
plots = grid([[None, p1, None], [p2, p3, p4]])
layout = column(paragraph, select, plots)
select.js_link('value', p1, 'sizing_mode')
select.js_link('value', p2, 'sizing_mode')
select.js_link('value', p3, 'sizing_mode')
select.js_link('value', p4, 'sizing_mode')
select.js_link('value', layout, 'sizing_mode')
show(layout)
def interactive_hist(adata, keys=['n_counts', 'n_genes'],
bins='auto', max_bins=100,
groups=None, fill_alpha=0.4,
palette=None, display_all=True,
tools='pan, reset, wheel_zoom, save',
legend_loc='top_right',
plot_width=None, plot_height=None, save=None,
*args, **kwargs):
"""Utility function to plot distributions with variable number of bins.
Params
--------
adata: AnnData object
annotated data object
keys: list(str), optional (default: `['n_counts', 'n_genes']`)
keys in `adata.obs` or `adata.var` where the distibutions are stored
bins: int; str, optional (default: `auto`)
number of bins used for plotting or str from numpy.histogram
max_bins: int, optional (default: `1000`)
maximum number of bins possible
groups: list(str), (default: `None`)
keys in `adata.obs.obs_keys()`, groups by all possible combinations of values, e.g. for
3 plates and 2 time points, we would create total of 6 groups
fill_alpha: float[0.0, 1.0], (default: `0.4`)
alpha channel of the fill color
palette: list(str), optional (default: `None`)
palette to use
display_all: bool, optional (default: `True`)
display the statistics for all data
tools: str, optional (default: `'pan,reset, wheel_zoom, save'`)
palette of interactive tools for the user
legend_loc: str, (default: `'top_right'`)
position of the legend
legend_loc: str, default(`'top_left'`)
position of the legend
plot_width: int, optional (default: `None`)
width of the plot
plot_height: int, optional (default: `None`)
height of the plot
save: Union[os.PathLike, Str, NoneType], optional (default: `None`)
path where to save the plot
*args, **kwargs: arguments, keyword arguments
addition argument to bokeh.models.figure
Returns
--------
None
"""
if max_bins < 1:
raise ValueError(f'`max_bins` must >= 1')
palette = Set1[9] + Set2[8] + Set3[12] if palette is None else palette
# check the input
for key in keys:
if key not in adata.obs.keys() and \
key not in adata.var.keys() and \
key not in adata.var_names:
raise ValueError(f'The key `{key}` does not exist in `adata.obs`, `adata.var` or `adata.var_names`.')
def _create_adata_groups():
if groups is None:
return [adata], [('all',)]
combs = list(product(*[set(adata.obs[g]) for g in groups]))
adatas= [adata[reduce(lambda l, r: l & r,
(adata.obs[k] == v for k, v in zip(groups, vals)), True)]
for vals in combs] + [adata]
if display_all:
combs += [('all',)]
adatas += [adata]
return adatas, combs
# group_v_combs contains the value combinations
ad_gs = _create_adata_groups()
cols = []
for key in keys:
callbacks = []
fig = figure(*args, tools=tools, **kwargs)
slider = Slider(start=1, end=max_bins, value=0, step=1,
title='Bins')
plots = []
for j, (ad, group_vs) in enumerate(filter(lambda ad_g: ad_g[0].n_obs > 0, zip(*ad_gs))):
if key in ad.obs.keys():
orig = ad.obs[key]
hist, edges = np.histogram(orig, density=True, bins=bins)
elif key in ad.var.keys():
orig = ad.var[key]
hist, edges = np.histogram(orig, density=True, bins=bins)
else:
orig = ad[:, key].X
hist, edges = np.histogram(orig, density=True, bins=bins)
slider.value = len(hist)
# case when automatic bins
max_bins = max(max_bins, slider.value)
# original data, used for recalculation of histogram in JS code
orig = ColumnDataSource(data=dict(values=orig))
# data that we update in JS code
source = ColumnDataSource(data=dict(hist=hist, l_edges=edges[:-1], r_edges=edges[1:]))
legend = ', '.join(': '.join(map(str, gv)) for gv in zip(groups, group_vs)) \
if groups is not None else 'all'
p = fig.quad(source=source, top='hist', bottom=0,
left='l_edges', right='r_edges',
fill_color=palette[j], legend_label=legend if legend_loc is not None else None,
muted_alpha=0,
line_color="#555555", fill_alpha=fill_alpha)
# create callback and slider
callback = CustomJS(args=dict(source=source, orig=orig), code=_inter_hist_js_code)
callback.args['bins'] = slider
callbacks.append(callback)
# add the current plot so that we can set it
# visible/invisible in JS code
plots.append(p)
slider.end = max_bins
# slider now updates all values
slider.js_on_change('value', *callbacks)
button = Button(label='Toggle', button_type='primary')
button.callback = CustomJS(
args={'plots': plots},
code='''
for (var i = 0; i < plots.length; i++) {
plots[i].muted = !plots[i].muted;
}
'''
)
if legend_loc is not None:
fig.legend.location = legend_loc
fig.legend.click_policy = 'mute'
fig.xaxis.axis_label = key
fig.yaxis.axis_label = 'normalized frequency'
_set_plot_wh(fig, plot_width, plot_height)
cols.append(column(slider, button, fig))
if _bokeh_version > (1, 0, 4):
from bokeh.layouts import grid
plot = grid(children=cols, ncols=2)
else:
cols = list(map(list, np.array_split(cols, np.ceil(len(cols) / 2))))
plot = layout(children=cols, sizing_mode='fixed', ncols=2)
if save is not None:
save = save if str(save).endswith('.html') else str(save) + '.html'
bokeh_save(plot, save)
else:
show(plot)
if len(signal) == len(signal_source.data['y']):
signal_source.data['y'] = signal*gain.value
else:
t = np.linspace(0, TIMESLICE, len(signal))
signal_source.data = dict(t=t, y=signal*gain.value)
if len(spectrum) == len(spectrum_source.data['y']):
spectrum_source.data['y'] = spectrum
else:
f = np.linspace(0, MAX_FREQ_KHZ, len(spectrum))
spectrum_source.data = dict(f=f, y=spectrum)
spectrum_plot.x_range.end = freq.value*0.001
alphas = []
for x in bins:
a = np.zeros_like(eq_range)
N = int(ceil(x))
a[:N] = (1 - eq_range[:N]*0.05)
alphas.append(a)
eq_source.data['alpha'] = np.hstack(alphas)
curdoc().add_periodic_callback(update, 80)
controls = row(gain, freq)
plots = grid(column(waterfall_plot, row(column(signal_plot, spectrum_plot), eq)))
curdoc().add_root(desc)
curdoc().add_root(controls)
curdoc().add_root(plots)
d2['y'] = []
d2['z'] = []
d2['timestamp_str'] = []
d2['timestamp'].push(d1['timestamp'][inds[0]])
d2['timestamp_str'].push(d1['timestamp_str'][inds[0]])
d2['x'].push(d1['x'][inds[0]])
d2['y'].push(d1['y'][inds[0]])
d2['z'].push(d1['z'][inds[0]])
d2['timestamp'].push(d1['timestamp'][inds[inds.length-1]])
d2['x'].push(d1['x'][inds[inds.length-1]])
d2['y'].push(d1['y'][inds[inds.length-1]])
d2['z'].push(d1['z'][inds[inds.length-1]])
d2['timestamp_str'].push(d1['timestamp_str'][inds[inds.length-1]])
s2.change.emit();
table.change.emit();
""",
),
)
### Layout
layout = grid(column(row(column(file_picker, p, select)),
row(column(selected_date_title, table)),
row(btn_chairstand, btn_3m_walk),
row(btn_clear_selection, btn_export)),
sizing_mode='stretch_width')
bokeh_doc = curdoc()
bokeh_doc.add_root(layout)
bokeh_doc.title = "Visualize chair stands & 3M walks"
f.vbar(x='DATE', top='value', source = plot_CDS_be, fill_alpha = 0.5,\
width=dt.timedelta(1), \
line_color='black', color='color', legend_label="Be")
f.vbar(x='DATE', top='value', source = plot_CDS_fr, fill_alpha = 0.5,\
width=dt.timedelta(1), \
line_color='black', color='color', y_range_name='France', legend_label="Fr")
f.legend.location = "top_left"
f.grid.grid_line_alpha = 0
f.xaxis.axis_label = 'Date'
f.ygrid.band_fill_color = "olive"
f.ygrid.band_fill_alpha = 0.1
return f
total = make_plot_compare(['hosp', 'TOTAL_IN'])
tab1 = Panel(child=total, title="Total")
icu = make_plot_compare(['rea', 'TOTAL_IN_ICU'])
tab2 = Panel(child=icu, title="ICU")
#deaths = make_plot_compare(['dc', 'DEATHS'])
tabs = Tabs(tabs=[tab1, tab2])
layout = grid([[cat_selection], [p], [tabs]])
curdoc().add_root(layout)
def Interactive_Graph():
print('Interactive Graph for Phase {} for {} on All Pairs at {}'.format(Phase,BotName,TimeFrame))
dfp1 = pd.read_csv(
'C:/Users/bryan/AppData/Roaming/MetaQuotes/Terminal/6C3C6A11D1C3791DD4DBF45421BF8028/reports/EA-B1v1/EURUSD/H4/WF_Report/OptiWFResults-EA-B1v1-EURUSD-H4-2007.1.1-2012.1.1-Complete.csv')
dfp2 = pd.read_csv(
'C:/Users/bryan/AppData/Roaming/MetaQuotes/Terminal/6C3C6A11D1C3791DD4DBF45421BF8028/reports/EA-B1v1/EURUSD/H4/WF_Report/OptiWFResults-EA-B1v1-EURUSD-H4-2007.1.1-2012.1.1-Complete.csv')
dfp3 = pd.read_csv(
'C:/Users/bryan/AppData/Roaming/MetaQuotes/Terminal/6C3C6A11D1C3791DD4DBF45421BF8028/reports/EA-B1v1/EURUSD/H4/WF_Report/OptiWFResults-EA-B1v1-EURUSD-H4-2007.1.1-2012.1.1-Complete.csv')
dfp4 = pd.read_csv(
'C:/Users/bryan/AppData/Roaming/MetaQuotes/Terminal/6C3C6A11D1C3791DD4DBF45421BF8028/reports/EA-B1v1/EURUSD/H4/WF_Report/OptiWFResults-EA-B1v1-EURUSD-H4-2007.1.1-2012.1.1-Complete.csv')
dfp5 = pd.read_csv(
'C:/Users/bryan/AppData/Roaming/MetaQuotes/Terminal/6C3C6A11D1C3791DD4DBF45421BF8028/reports/EA-B1v1/EURUSD/H4/WF_Report/OptiWFResults-EA-B1v1-EURUSD-H4-2007.1.1-2012.1.1-Complete.csv')
columns = sorted(dfp1.columns)
discrete = [x for x in columns if dfp1[x].dtype == object]
continuous = [x for x in columns if x not in discrete]
def create_figure1():
xsp1 = dfp1[x.value].values
ysp1 = dfp1[y.value].values
x_titlep1 = x.value.title()
y_titlep1 = y.value.title()
kwp1 = dict()
if x.value in discrete:
kwp1['x_range'] = sorted(set(xsp1))
if y.value in discrete:
kwp1['y_range'] = sorted(set(ysp1))
kwp1['title'] = "%s vs %s" % (x_titlep1, y_titlep1) + " for {} on {} and {}".format(BotName, EURUSD, TimeFrame)
pp1 = figure(plot_height=400, plot_width=800, tools='pan,box_zoom,hover,reset,lasso_select', **kwp1)
pp1.xaxis.axis_label = x_titlep1
pp1.yaxis.axis_label = y_titlep1
if x.value in discrete:
pp1.xaxis.major_label_orientation = pd.np.pi / 4
sz = 9
if size.value != 'None':
if len(set(dfp2[size.value])) > N_SIZES:
groups = pd.qcut(dfp2[size.value].values, N_SIZES, duplicates='drop')
else:
groups = pd.Categorical(dfp2[size.value])
sz = [SIZES[xx] for xx in groups.codes]
c = "#31AADE"
if color.value != 'None':
if len(set(dfp2[color.value])) > N_COLORS:
groups = pd.qcut(dfp2[color.value].values, N_COLORS, duplicates='drop')
else:
groups = pd.Categorical(dfp2[color.value])
c = [COLORS[xx] for xx in groups.codes]
# COLOR BAR NEXT TO GRAPHIC
#PAIR 1
try:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1['Profit']),high=max(dfp1['Profit'])) # arreglar Maximo y minimo para que agarren el valor
except ValueError:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=0,high=1)
print('This {} did not launch Phase {} on {}'.format(BotName,Phase,TimeFrame))
#Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1[color.value]),high=max(dfp1[color.value])) # arreglar Maximo y minimo para que agarren el valor
GraphTicker = AdaptiveTicker(base=50,desired_num_ticks=10,num_minor_ticks=20,max_interval=1000)
Color_legend = ColorBar(color_mapper=Var_color_mapper,ticker =GraphTicker,label_standoff=12, border_line_color=None,location=(0, 0)) #arreglar LogTicker para que muestre por al escala del color
pp1.circle(x=xsp1, y=ysp1, color=c, size=sz, line_color="white", alpha=0.6, hover_color='white', hover_alpha=0.5)
pp1.add_layout(Color_legend,'right')
return pp1
def create_figure2():
xsp2 = dfp2[x.value].values
ysp2 = dfp2[y.value].values
x_titlep2 = x.value.title()
y_titlep2 = y.value.title()
kwp2 = dict()
if x.value in discrete:
kwp2['x_range'] = sorted(set(xsp2))
if y.value in discrete:
kwp2['y_range'] = sorted(set(ysp2))
kwp2['title'] = "%s vs %s" % (x_titlep2, y_titlep2) + " for {} on {} and {}".format(BotName, GBPUSD, TimeFrame)
pp2 = figure(plot_height=400, plot_width=800, tools='pan,box_zoom,hover,reset,lasso_select', **kwp2)
pp2.xaxis.axis_label = x_titlep2
pp2.yaxis.axis_label = y_titlep2
if x.value in discrete:
pp2.xaxis.major_label_orientation = pd.np.pi / 4
sz = 9
if size.value != 'None':
if len(set(dfp2[size.value])) > N_SIZES:
groups = pd.qcut(dfp2[size.value].values, N_SIZES, duplicates='drop')
else:
groups = pd.Categorical(dfp2[size.value])
sz = [SIZES[xx] for xx in groups.codes]
c = "#31AADE"
if color.value != 'None':
if len(set(dfp2[color.value])) > N_COLORS:
groups = pd.qcut(dfp2[color.value].values, N_COLORS, duplicates='drop')
else:
groups = pd.Categorical(dfp2[color.value])
c = [COLORS[xx] for xx in groups.codes]
# COLOR BAR NEXT TO GRAPHIC
#PAIR 2
try:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1['Profit']),high=max(dfp1['Profit'])) # arreglar Maximo y minimo para que agarren el valor
except ValueError:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=0,high=1)
print('This {} did not launch Phase {} on {}'.format(BotName,Phase,TimeFrame))
# Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1[color.value]),high=max(dfp1[color.value])) # arreglar Maximo y minimo para que agarren el valor
GraphTicker = AdaptiveTicker(base=50, desired_num_ticks=10, num_minor_ticks=20, max_interval=1000)
Color_legend = ColorBar(color_mapper=Var_color_mapper, ticker=GraphTicker, label_standoff=12,border_line_color=None,location=(0, 0)) # arreglar LogTicker para que muestre por al escala del color
pp2.circle(x=xsp2, y=ysp2, color=c, size=sz, line_color="white", alpha=0.6, hover_color='white',hover_alpha=0.5)
pp2.add_layout(Color_legend, 'right')
return pp2
def create_figure3():
xsp3 = dfp3[x.value].values
ysp3 = dfp3[y.value].values
x_titlep3 = x.value.title()
y_titlep3 = y.value.title()
kwp3 = dict()
if x.value in discrete:
kwp3['x_range'] = sorted(set(xsp3))
if y.value in discrete:
kwp3['y_range'] = sorted(set(ysp3))
kwp3['title'] = "%s vs %s" % (x_titlep3, y_titlep3) + " for {} on {} and {}".format(BotName, USDCAD, TimeFrame)
pp3 = figure(plot_height=400, plot_width=800, tools='pan,box_zoom,hover,reset,lasso_select', **kwp3)
pp3.xaxis.axis_label = x_titlep3
pp3.yaxis.axis_label = y_titlep3
if x.value in discrete:
pp3.xaxis.major_label_orientation = pd.np.pi / 4
sz = 9
if size.value != 'None':
if len(set(dfp3[size.value])) > N_SIZES:
groups = pd.qcut(dfp3[size.value].values, N_SIZES, duplicates='drop')
else:
groups = pd.Categorical(dfp3[size.value])
sz = [SIZES[xx] for xx in groups.codes]
c = "#31AADE"
if color.value != 'None':
if len(set(dfp3[color.value])) > N_COLORS:
groups = pd.qcut(dfp3[color.value].values, N_COLORS, duplicates='drop')
else:
groups = pd.Categorical(dfp3[color.value])
c = [COLORS[xx] for xx in groups.codes]
# COLOR BAR NEXT TO GRAPHIC
#PAIR 3
try:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1['Profit']),high=max(dfp1['Profit'])) # arreglar Maximo y minimo para que agarren el valor
except ValueError:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=0,high=1)
print('This {} did not launch Phase {} on {}'.format(BotName,Phase,TimeFrame))
# Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1[color.value]),high=max(dfp1[color.value])) # arreglar Maximo y minimo para que agarren el valor
GraphTicker = AdaptiveTicker(base=50, desired_num_ticks=10, num_minor_ticks=20, max_interval=1000)
Color_legend = ColorBar(color_mapper=Var_color_mapper, ticker=GraphTicker, label_standoff=12,border_line_color=None,location=(0, 0))
pp3.circle(x=xsp3, y=ysp3, color=c, size=sz, line_color="white", alpha=0.6, hover_color='white',hover_alpha=0.5)
pp3.add_layout(Color_legend, 'right')
return pp3
def create_figure4():
xsp4 = dfp4[x.value].values
ysp4 = dfp4[y.value].values
x_titlep4 = x.value.title()
y_titlep4 = y.value.title()
kwp4 = dict()
if x.value in discrete:
kwp4['x_range'] = sorted(set(xsp4))
if y.value in discrete:
kwp4['y_range'] = sorted(set(ysp4))
kwp4['title'] = "%s vs %s" % (x_titlep4, y_titlep4) + " for {} on {} and {}".format(BotName, USDCHF, TimeFrame)
pp4 = figure(plot_height=400, plot_width=800, tools='pan,box_zoom,hover,reset,lasso_select', **kwp4)
pp4.xaxis.axis_label = x_titlep4
pp4.yaxis.axis_label = y_titlep4
if x.value in discrete:
pp4.xaxis.major_label_orientation = pd.np.pi / 4
sz = 9
if size.value != 'None':
if len(set(dfp4[size.value])) > N_SIZES:
groups = pd.qcut(dfp4[size.value].values, N_SIZES, duplicates='drop')
else:
groups = pd.Categorical(dfp4[size.value])
sz = [SIZES[xx] for xx in groups.codes]
c = "#31AADE"
if color.value != 'None':
if len(set(dfp4[color.value])) > N_COLORS:
groups = pd.qcut(dfp4[color.value].values, N_COLORS, duplicates='drop')
else:
groups = pd.Categorical(dfp4[color.value])
c = [COLORS[xx] for xx in groups.codes]
# COLOR BAR NEXT TO GRAPHIC
#PAIR 4
try:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1['Profit']),high=max(dfp1['Profit'])) # arreglar Maximo y minimo para que agarren el valor
except ValueError:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=0,high=1)
print('This {} did not launch Phase {} on {}'.format(BotName,Phase,TimeFrame))
# Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1[color.value]),high=max(dfp1[color.value])) # arreglar Maximo y minimo para que agarren el valor
GraphTicker = AdaptiveTicker(base=50, desired_num_ticks=10, num_minor_ticks=20, max_interval=1000)
Color_legend = ColorBar(color_mapper=Var_color_mapper, ticker=GraphTicker, label_standoff=12,border_line_color=None,location=(0, 0))
pp4.circle(x=xsp4, y=ysp4, color=c, size=sz, line_color="white", alpha=0.6, hover_color='white',hover_alpha=0.5)
pp4.add_layout(Color_legend, 'right')
return pp4
def create_figure5():
xsp5 = dfp5[x.value].values
ysp5 = dfp5[y.value].values
x_titlep5 = x.value.title()
y_titlep5 = y.value.title()
kwp5 = dict()
if x.value in discrete:
kwp5['x_range'] = sorted(set(xsp5))
if y.value in discrete:
kwp5['y_range'] = sorted(set(ysp5))
kwp5['title'] = "%s vs %s" % (x_titlep5, y_titlep5) + " for {} on {} and {}".format(BotName, USDJPY, TimeFrame)
pp5 = figure(plot_height=500, plot_width=800, tools='pan,box_zoom,hover,reset,lasso_select', **kwp5)
pp5.xaxis.axis_label = x_titlep5
pp5.yaxis.axis_label = y_titlep5
if x.value in discrete:
pp5.xaxis.major_label_orientation = pd.np.pi / 4
sz = 9
if size.value != 'None':
if len(set(dfp5[size.value])) > N_SIZES:
groups = pd.qcut(dfp5[size.value].values, N_SIZES, duplicates='drop')
else:
groups = pd.Categorical(dfp5[size.value])
sz = [SIZES[xx] for xx in groups.codes]
c = "#31AADE"
if color.value != 'None':
if len(set(dfp5[color.value])) > N_COLORS:
groups = pd.qcut(dfp5[color.value].values, N_COLORS, duplicates='drop')
else:
groups = pd.Categorical(dfp5[color.value])
c = [COLORS[xx] for xx in groups.codes]
# COLOR BAR NEXT TO GRAPHIC
#PAIR 5
try:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1['Profit']),high=max(dfp1['Profit'])) # arreglar Maximo y minimo para que agarren el valor
except ValueError:
Var_color_mapper = LinearColorMapper(palette="Inferno256",low=0,high=1)
print('This {} did not launch Phase {} on {}'.format(BotName,Phase,TimeFrame))
# Var_color_mapper = LinearColorMapper(palette="Inferno256",low=min(dfp1[color.value]),high=max(dfp1[color.value])) # arreglar Maximo y minimo para que agarren el valor
GraphTicker = AdaptiveTicker(base=50, desired_num_ticks=10, num_minor_ticks=20, max_interval=1000)
Color_legend = ColorBar(color_mapper=Var_color_mapper, ticker=GraphTicker, label_standoff=12,border_line_color=None,location=(0, 0))
pp5.circle(x=xsp5, y=ysp5, color=c, size=sz, line_color="white", alpha=0.6, hover_color='white',hover_alpha=0.5)
pp5.add_layout(Color_legend, 'right')
return pp5
def callback(attr, old, new):
layout.children[1] = grid([create_figure1(), create_figure2(), create_figure3(),create_figure4(),create_figure5()], ncols=2)
callback = CustomJS(code="console.log('tap event occurred')")
#source = ColumnDataSource(data=dict(x=dfp1['Pass'], y=dfp1['Profit']))
x = Select(title='X-Axis', value='Pass', options=columns)
x.on_change('value', callback)
y = Select(title='Y-Axis', value='Profit', options=columns)
y.on_change('value', callback)
size = Select(title='Size', value='None', options=['None'] + continuous)
size.on_change('value', callback)
color = Select(title='Color', value='None', options=['None'] + continuous)
color.on_change('value', callback)
controls = column(y, x, color, size, width=200)
#layout = row(controls, create_figure1(),create_figure2(),create_figure3()) # ESTE FUNCIONA GUARDAR POR AHORA
#layoutgrid = gridplot([controls,create_figure1(),create_figure2(),create_figure3()],toolbar_location='left',sizing_mode='stretch_both',ncols=2) # ESTO NO ACTUALIZA RESULTADOS A PESAR DE QUE SI LOS UBICA CORRECTAMENTE
#layout = row(controls, layoutgrid)
layoutgrid = grid([create_figure1(), create_figure2(), create_figure3(),create_figure4(),create_figure5()], ncols=2) #ESTE SI FUNCIONA PERO AL ACTUALIZAR RESULTADOS DEJA SOLO FIGURA 1
layout = row(controls,layoutgrid)
curdoc().add_root(layout)
output_notebook()
curdoc().title = "Phase {} All Pairs on {}".format(Phase, TimeFrame),
process = subprocess.call(['bokeh serve --show BokehINTERACTIVEALLPAIRS.py','bokeh serve --show BokehINTERACTIVE.py'])
def test_grid() -> None:
s0 = Spacer()
s1 = Spacer()
s2 = Spacer()
s3 = Spacer()
s4 = Spacer()
s5 = Spacer()
s6 = Spacer()
g0 = grid([])
assert g0.children == []
g1 = grid(column(s0, row(column(s1, s2, s3, s4, s5), s6)))
assert g1.children == [
(s0, 0, 0, 1, 2),
(s1, 1, 0, 1, 1),
(s2, 2, 0, 1, 1),
(s3, 3, 0, 1, 1),
(s4, 4, 0, 1, 1),
(s5, 5, 0, 1, 1),
(s6, 1, 1, 5, 1),
]
g2 = grid([s0, [[s1, s2, s3, s4, s5], s6]])
assert g2.children == [
(s0, 0, 0, 1, 2),
(s1, 1, 0, 1, 1),
(s2, 2, 0, 1, 1),
(s3, 3, 0, 1, 1),
(s4, 4, 0, 1, 1),
(s5, 5, 0, 1, 1),
(s6, 1, 1, 5, 1),
]
g3 = grid([s0, s1, s2, s3, s4, s5, s6], ncols=2)
assert g3.children == [
(s0, 0, 0, 1, 1),
(s1, 0, 1, 1, 1),
(s2, 1, 0, 1, 1),
(s3, 1, 1, 1, 1),
(s4, 2, 0, 1, 1),
(s5, 2, 1, 1, 1),
(s6, 3, 0, 1, 2),
]
g4 = grid([s0, s1, s2, s3, s4, s5, s6, None], ncols=2)
assert g4.children == [
(s0, 0, 0, 1, 1),
(s1, 0, 1, 1, 1),
(s2, 1, 0, 1, 1),
(s3, 1, 1, 1, 1),
(s4, 2, 0, 1, 1),
(s5, 2, 1, 1, 1),
(s6, 3, 0, 1, 1),
]
with pytest.raises(NotImplementedError):
grid("""
+----+----+----+----+
| s1 | s2 | s3 | |
+---------+----+ s4 |
| s5 | s5 | |
+---------+----+----+
""")
def __init__(
self,
ydeg,
npix,
npts,
nmaps,
throttle_time,
nosmooth,
gp,
sample_function,
):
# Settings
self.ydeg = ydeg
self.npix = npix
self.npts = npts
self.throttle_time = throttle_time
self.nosmooth = nosmooth
self.nmaps = nmaps
self.gp = gp
# Design matrices
self.A_I = get_intensity_design_matrix(ydeg, npix)
self.A_F = get_flux_design_matrix(ydeg, npts)
def sample_ylm(r, mu_l, sigma_l, c, n):
# Avoid issues at the boundaries
if mu_l == 0:
mu_l = 1e-2
elif mu_l == 90:
mu_l = 90 - 1e-2
a, b = gauss2beta(mu_l, sigma_l)
return sample_function(r, a, b, c, n)
self.sample_ylm = sample_ylm
# Draw three samples from the default distr
self.ylm = self.sample_ylm(
params["size"]["r"]["value"],
params["latitude"]["mu"]["value"],
params["latitude"]["sigma"]["value"],
params["contrast"]["c"]["value"],
params["contrast"]["n"]["value"],
)[0]
# Plot the GP ylm samples
self.color_mapper = LinearColorMapper(palette="Plasma256",
nan_color="white",
low=0.5,
high=1.2)
self.moll_plot = [None for i in range(self.nmaps)]
self.moll_source = [
ColumnDataSource(data=dict(image=[
1.0 +
(self.A_I @ self.ylm[i]).reshape(self.npix, 2 * self.npix)
])) for i in range(self.nmaps)
]
eps = 0.1
epsp = 0.02
xe = np.linspace(-2, 2, 300)
ye = 0.5 * np.sqrt(4 - xe**2)
for i in range(self.nmaps):
self.moll_plot[i] = figure(
plot_width=280,
plot_height=130,
toolbar_location=None,
x_range=(-2 - eps, 2 + eps),
y_range=(-1 - eps / 2, 1 + eps / 2),
)
self.moll_plot[i].axis.visible = False
self.moll_plot[i].grid.visible = False
self.moll_plot[i].outline_line_color = None
self.moll_plot[i].image(
image="image",
x=-2,
y=-1,
dw=4 + epsp,
dh=2 + epsp / 2,
color_mapper=self.color_mapper,
source=self.moll_source[i],
)
self.moll_plot[i].toolbar.active_drag = None
self.moll_plot[i].toolbar.active_scroll = None
self.moll_plot[i].toolbar.active_tap = None
# Plot lat/lon grid
lat_lines = get_latitude_lines()
lon_lines = get_longitude_lines()
for i in range(self.nmaps):
for x, y in lat_lines:
self.moll_plot[i].line(x,
y,
line_width=1,
color="black",
alpha=0.25)
for x, y in lon_lines:
self.moll_plot[i].line(x,
y,
line_width=1,
color="black",
alpha=0.25)
self.moll_plot[i].line(xe,
ye,
line_width=3,
color="black",
alpha=1)
self.moll_plot[i].line(xe,
-ye,
line_width=3,
color="black",
alpha=1)
# Colorbar slider
self.slider = RangeSlider(
start=0,
end=1.5,
step=0.01,
value=(0.5, 1.2),
orientation="horizontal",
show_value=False,
css_classes=["colorbar-slider"],
direction="ltr",
title="cmap",
)
self.slider.on_change("value", self.slider_callback)
# Buttons
self.seed_button = Button(
label="re-seed",
button_type="default",
css_classes=["seed-button"],
sizing_mode="fixed",
height=30,
width=75,
)
self.seed_button.on_click(self.seed_callback)
self.smooth_button = Toggle(
label="smooth",
button_type="default",
css_classes=["smooth-button"],
sizing_mode="fixed",
height=30,
width=75,
active=False,
)
self.smooth_button.disabled = bool(self.nosmooth)
self.smooth_button.on_click(self.smooth_callback)
self.auto_button = Toggle(
label="auto",
button_type="default",
css_classes=["auto-button"],
sizing_mode="fixed",
height=30,
width=75,
active=True,
)
self.reset_button = Button(
label="reset",
button_type="default",
css_classes=["reset-button"],
sizing_mode="fixed",
height=30,
width=75,
)
self.reset_button.on_click(self.reset_callback)
# Light curve samples
self.flux_plot = [None for i in range(self.nmaps)]
self.flux_source = [
ColumnDataSource(data=dict(
xs=[np.linspace(0, 2, npts) for j in range(6)],
ys=[fluxnorm(self.A_F[j] @ self.ylm[i]) for j in range(6)],
color=[Plasma6[5 - j] for j in range(6)],
inc=[15, 30, 45, 60, 75, 90],
)) for i in range(self.nmaps)
]
for i in range(self.nmaps):
self.flux_plot[i] = figure(
toolbar_location=None,
x_range=(0, 2),
y_range=None,
min_border_left=50,
plot_height=400,
)
if i == 0:
self.flux_plot[i].yaxis.axis_label = "flux [ppt]"
self.flux_plot[i].yaxis.axis_label_text_font_style = "normal"
self.flux_plot[i].xaxis.axis_label = "rotational phase"
self.flux_plot[i].xaxis.axis_label_text_font_style = "normal"
self.flux_plot[i].outline_line_color = None
self.flux_plot[i].multi_line(
xs="xs",
ys="ys",
line_color="color",
source=self.flux_source[i],
)
self.flux_plot[i].toolbar.active_drag = None
self.flux_plot[i].toolbar.active_scroll = None
self.flux_plot[i].toolbar.active_tap = None
self.flux_plot[i].yaxis.major_label_orientation = np.pi / 4
self.flux_plot[i].xaxis.axis_label_text_font_size = "8pt"
self.flux_plot[i].xaxis.major_label_text_font_size = "8pt"
self.flux_plot[i].yaxis.axis_label_text_font_size = "8pt"
self.flux_plot[i].yaxis.major_label_text_font_size = "8pt"
# Javascript callback to update light curves & images
self.A_F_source = ColumnDataSource(data=dict(A_F=self.A_F))
self.A_I_source = ColumnDataSource(data=dict(A_I=self.A_I))
self.ylm_source = ColumnDataSource(data=dict(ylm=self.ylm))
callback = CustomJS(
args=dict(
A_F_source=self.A_F_source,
A_I_source=self.A_I_source,
ylm_source=self.ylm_source,
flux_source=self.flux_source,
moll_source=self.moll_source,
),
code="""
var A_F = A_F_source.data['A_F'];
var A_I = A_I_source.data['A_I'];
var ylm = ylm_source.data['ylm'];
var i, j, k, l, m, n;
for (n = 0; n < {nmax}; n++) {{
// Update the light curves
var flux = flux_source[n].data['ys'];
for (l = 0; l < {lmax}; l++) {{
for (m = 0; m < {mmax}; m++) {{
flux[l][m] = 0.0;
for (k = 0; k < {kmax}; k++) {{
flux[l][m] += A_F[{kmax} * ({mmax} * l + m) + k] * ylm[{kmax} * n + k];
}}
}}
// Normalize
var mean = flux[l].reduce((previous, current) => current += previous) / {mmax};
for (m = 0; m < {mmax}; m++) {{
flux[l][m] = 1e3 * ((1 + flux[l][m]) / (1 + mean) - 1)
}}
}}
flux_source[n].change.emit();
// Update the images
var image = moll_source[n].data['image'][0];
for (i = 0; i < {imax}; i++) {{
for (j = 0; j < {jmax}; j++) {{
image[{jmax} * i + j] = 1.0;
for (k = 0; k < {kmax}; k++) {{
image[{jmax} * i + j] += A_I[{kmax} * ({jmax} * i + j) + k] * ylm[{kmax} * n + k];
}}
}}
}}
moll_source[n].change.emit();
}}
""".format(
imax=self.npix,
jmax=2 * self.npix,
kmax=(self.ydeg + 1)**2,
nmax=self.nmaps,
lmax=self.A_F.shape[0],
mmax=self.npts,
),
)
self.js_dummy = self.flux_plot[0].circle(x=0, y=0, size=1, alpha=0)
self.js_dummy.glyph.js_on_change("size", callback)
# Full layout
self.plots = row(
*[
column(m, f, sizing_mode="scale_both")
for m, f in zip(self.moll_plot, self.flux_plot)
],
margin=(10, 30, 10, 30),
sizing_mode="scale_both",
css_classes=["samples"],
)
self.layout = grid([[self.plots]])
refresh_button_2.on_click(refresh_file_list)
run_cases_section = column(run_cases_div, run_cases_select_div,
run_cases_select,
row(run_cases_button,
refresh_button_2), run_cases_output)
###############################################################################
"""
Specify site layout
"""
###############################################################################
# Define layouts
layout_settings = grid(
[[header_div], [sites_section], [path_input_section], [dates_section],
[clm_settings_section], [fates_settings_section], [create_file_section]],
sizing_mode=None)
layout_running = grid(
[[run_header_div], [make_cases_section], [run_cases_section]],
sizing_mode=None)
# Define tabs
tab_1 = Panel(child=layout_settings, title="Create settings")
tab_2 = Panel(child=layout_running, title="Build/run cases")
page_tabs = Tabs(tabs=[tab_1, tab_2])
# add the layout to curdoc
curdoc().add_root(page_tabs)
def __init__(
self,
params,
gp_callback,
limits=(-90, 90),
xticks=[-90, -60, -30, 0, 30, 60, 90],
funcs=[],
labels=[],
xlabel="",
ylabel="",
distribution=False,
legend_location="bottom_right",
npts=300,
):
# Store
self.params = params
self.limits = limits
self.funcs = funcs
self.gp_callback = gp_callback
self.last_run = 0.0
self.throttle_time = 0.0
self.distribution = distribution
# Arrays
if len(self.funcs):
xmin, xmax = self.limits
xs = [np.linspace(xmin, xmax, npts) for f in self.funcs]
ys = [
f(x, *[self.params[p]["value"] for p in self.params.keys()])
for x, f in zip(xs, self.funcs)
]
colors = Category10[10][:len(xs)]
lws = np.append([3], np.ones(10))[:len(xs)]
self.source = ColumnDataSource(
data=dict(xs=xs, ys=ys, colors=colors, lws=lws))
# Plot them
dx = (xmax - xmin) * 0.01
self.plot = figure(
plot_width=400,
plot_height=600,
toolbar_location=None,
x_range=(xmin - dx, xmax + dx),
title=xlabel,
sizing_mode="stretch_both",
)
self.plot.title.align = "center"
self.plot.title.text_font_size = "14pt"
self.plot.multi_line(
xs="xs",
ys="ys",
line_color="colors",
source=self.source,
line_width="lws",
line_alpha=0.6,
)
self.plot.xaxis.axis_label_text_font_style = "normal"
self.plot.xaxis.axis_label_text_font_size = "12pt"
self.plot.xaxis.ticker = FixedTicker(ticks=xticks)
self.plot.yaxis[0].formatter = FuncTickFormatter(
code="return ' ';")
self.plot.yaxis.axis_label = ylabel
self.plot.yaxis.axis_label_text_font_style = "normal"
self.plot.yaxis.axis_label_text_font_size = "12pt"
self.plot.outline_line_width = 1
self.plot.outline_line_alpha = 1
self.plot.outline_line_color = "black"
self.plot.toolbar.active_drag = None
self.plot.toolbar.active_scroll = None
self.plot.toolbar.active_tap = None
# Legend
for j, label in enumerate(labels):
self.plot.line(
[0, 0],
[0, 0],
legend_label=label,
line_color=Category10[10][j],
)
self.plot.legend.location = legend_location
self.plot.legend.title_text_font_style = "bold"
self.plot.legend.title_text_font_size = "8pt"
self.plot.legend.label_text_font_size = "8pt"
self.plot.legend.spacing = 0
self.plot.legend.label_height = 5
self.plot.legend.glyph_height = 15
else:
self.plot = None
# Sliders
self.sliders = []
for p in self.params.keys():
slider = Slider(
start=self.params[p]["start"],
end=self.params[p]["stop"],
step=self.params[p]["step"],
value=self.params[p]["value"],
orientation="horizontal",
format="0.3f",
css_classes=["custom-slider"],
sizing_mode="stretch_width",
height=10,
show_value=False,
title=self.params[p]["label"],
)
slider.on_change("value_throttled", self.callback)
slider.on_change("value", self.callback_throttled)
self.sliders.append(slider)
# HACK: Add a hidden slider to get the correct
# amount of padding below the graph
if len(self.params.keys()) < 2:
slider = Slider(
start=0,
end=1,
step=0.1,
value=0.5,
orientation="horizontal",
css_classes=["custom-slider", "hidden-slider"],
sizing_mode="stretch_width",
height=10,
show_value=False,
title="s",
)
self.hidden_sliders = [slider]
else:
self.hidden_sliders = []
# Show mean and std. dev.?
if self.distribution:
self.mean_vline = Span(
location=self.sliders[0].value,
dimension="height",
line_color="black",
line_width=1,
line_dash="dashed",
)
self.std_vline1 = Span(
location=self.sliders[0].value - self.sliders[1].value,
dimension="height",
line_color="black",
line_width=1,
line_dash="dotted",
)
self.std_vline2 = Span(
location=self.sliders[0].value + self.sliders[1].value,
dimension="height",
line_color="black",
line_width=1,
line_dash="dotted",
)
self.plot.renderers.extend(
[self.mean_vline, self.std_vline1, self.std_vline2])
# Full layout
if self.plot is not None:
self.layout = grid([
[self.plot],
[
column(
*self.sliders,
*self.hidden_sliders,
sizing_mode="stretch_width",
)
],
])
else:
self.layout = grid([[
column(
*self.sliders,
*self.hidden_sliders,
sizing_mode="stretch_width",
)
]])