def test_get_extra_mll_args(self): train_X = torch.rand(3, 5) train_Y = torch.rand(3) model = SingleTaskGP(train_X=train_X, train_Y=train_Y) # test ExactMarginalLogLikelihood exact_mll = ExactMarginalLogLikelihood(model.likelihood, model) exact_extra_args = _get_extra_mll_args(mll=exact_mll) self.assertEqual(len(exact_extra_args), 1) self.assertTrue(torch.equal(exact_extra_args[0], train_X)) # test VariationalELBO elbo = VariationalELBO(model.likelihood, model, num_data=train_X.shape[0]) elbo_extra_args = _get_extra_mll_args(mll=elbo) self.assertEqual(len(elbo_extra_args), 0) # test SumMarginalLogLikelihood model2 = ModelListGP(gp_models=[model]) sum_mll = SumMarginalLogLikelihood(model2.likelihood, model2) sum_mll_extra_args = _get_extra_mll_args(mll=sum_mll) self.assertEqual(len(sum_mll_extra_args), 1) self.assertEqual(len(sum_mll_extra_args[0]), 1) self.assertTrue(torch.equal(sum_mll_extra_args[0][0], train_X)) # test unsupported MarginalLogLikelihood type unsupported_mll = MarginalLogLikelihood(model.likelihood, model) with self.assertRaises(ValueError): _get_extra_mll_args(mll=unsupported_mll)
def test_get_extra_mll_args(self): train_X = torch.rand(3, 5) train_Y = torch.rand(3, 1) model = SingleTaskGP(train_X=train_X, train_Y=train_Y) # test ExactMarginalLogLikelihood exact_mll = ExactMarginalLogLikelihood(model.likelihood, model) exact_extra_args = _get_extra_mll_args(mll=exact_mll) self.assertEqual(len(exact_extra_args), 1) self.assertTrue(torch.equal(exact_extra_args[0], train_X)) # test SumMarginalLogLikelihood model2 = ModelListGP(model) sum_mll = SumMarginalLogLikelihood(model2.likelihood, model2) sum_mll_extra_args = _get_extra_mll_args(mll=sum_mll) self.assertEqual(len(sum_mll_extra_args), 1) self.assertEqual(len(sum_mll_extra_args[0]), 1) self.assertTrue(torch.equal(sum_mll_extra_args[0][0], train_X)) # test unsupported MarginalLogLikelihood type unsupported_mll = MarginalLogLikelihood(model.likelihood, model) unsupported_mll_extra_args = _get_extra_mll_args(mll=unsupported_mll) self.assertEqual(unsupported_mll_extra_args, [])
def _scipy_objective_and_grad( x: np.ndarray, mll: MarginalLogLikelihood, property_dict: Dict[str, TorchAttr]) -> Tuple[float, np.ndarray]: r"""Get objective and gradient in format that scipy expects. Args: x: The (flattened) input parameters. mll: The MarginalLogLikelihood module to evaluate. property_dict: The property dictionary required to "unflatten" the input parameter vector, as generated by `module_to_array`. Returns: 2-element tuple containing - The objective value. - The gradient of the objective. """ mll = set_params_with_array(mll, x, property_dict) train_inputs, train_targets = mll.model.train_inputs, mll.model.train_targets mll.zero_grad() try: # catch linear algebra errors in gpytorch output = mll.model(*train_inputs) args = [output, train_targets] + _get_extra_mll_args(mll) loss = -mll(*args).sum() except RuntimeError as e: if "singular" in e.args[0]: return float("nan"), np.full_like(x, "nan") else: raise e # pragma: nocover loss.backward() param_dict = OrderedDict(mll.named_parameters()) grad = [] for p_name in property_dict: t = param_dict[p_name].grad if t is None: # this deals with parameters that do not affect the loss grad.append(np.zeros(property_dict[p_name].shape.numel())) else: grad.append(t.detach().view(-1).cpu().double().clone().numpy()) mll.zero_grad() return loss.item(), np.concatenate(grad)
def cost(x): param_dict = OrderedDict(mll.named_parameters()) idx = 0 for p_name, attrs in property_dict.items(): # Construct the new tensor if len(attrs.shape) == 0: # deal with scalar tensors # new_data = torch.tensor(x[0], dtype=attrs.dtype, device=attrs.device) new_data = torch.tensor(x[idx][0], dtype=attrs.dtype, device=attrs.device) else: # new_data = torch.tensor(x, dtype=attrs.dtype, device=attrs.device).view(*attrs.shape) new_data = torch.tensor(x[idx], dtype=attrs.dtype, device=attrs.device).view(*attrs.shape) param_dict[p_name].data = new_data idx += 1 # mllx = set_params_with_array(mll, x, property_dict) train_inputs, train_targets = mll.model.train_inputs, mll.model.train_targets mll.zero_grad() output = mll.model(*train_inputs) args = [output, train_targets] + _get_extra_mll_args(mll) loss = -mll(*args).sum() return loss
def fit_gpytorch_torch( mll: MarginalLogLikelihood, bounds: Optional[ParameterBounds] = None, optimizer_cls: Optimizer = Adam, options: Optional[Dict[str, Any]] = None, track_iterations: bool = True, approx_mll: bool = True, ) -> Tuple[MarginalLogLikelihood, Dict[str, Union[float, List[OptimizationIteration]]]]: r"""Fit a gpytorch model by maximizing MLL with a torch optimizer. The model and likelihood in mll must already be in train mode. Note: this method requires that the model has `train_inputs` and `train_targets`. Args: mll: MarginalLogLikelihood to be maximized. bounds: A ParameterBounds dictionary mapping parameter names to tuples of lower and upper bounds. Bounds specified here take precedence over bounds on the same parameters specified in the constraints registered with the module. optimizer_cls: Torch optimizer to use. Must not require a closure. options: options for model fitting. Relevant options will be passed to the `optimizer_cls`. Additionally, options can include: "disp" to specify whether to display model fitting diagnostics and "maxiter" to specify the maximum number of iterations. track_iterations: Track the function values and wall time for each iteration. approx_mll: If True, use gpytorch's approximate MLL computation ( according to the gpytorch defaults based on the training at size). Unlike for the deterministic algorithms used in fit_gpytorch_scipy, this is not an issue for stochastic optimizers. Returns: 2-element tuple containing - mll with parameters optimized in-place. - Dictionary with the following key/values: "fopt": Best mll value. "wall_time": Wall time of fitting. "iterations": List of OptimizationIteration objects with information on each iteration. If track_iterations is False, will be empty. Example: >>> gp = SingleTaskGP(train_X, train_Y) >>> mll = ExactMarginalLogLikelihood(gp.likelihood, gp) >>> mll.train() >>> fit_gpytorch_torch(mll) >>> mll.eval() """ optim_options = {"maxiter": 100, "disp": True, "lr": 0.05} optim_options.update(options or {}) exclude = optim_options.pop("exclude", None) if exclude is not None: mll_params = [ t for p_name, t in mll.named_parameters() if p_name not in exclude ] else: mll_params = list(mll.parameters()) optimizer = optimizer_cls( params=[{"params": mll_params}], **_filter_kwargs(optimizer_cls, **optim_options), ) # get bounds specified in model (if any) bounds_: ParameterBounds = {} if hasattr(mll, "named_parameters_and_constraints"): for param_name, _, constraint in mll.named_parameters_and_constraints(): if constraint is not None and not constraint.enforced: bounds_[param_name] = constraint.lower_bound, constraint.upper_bound # update with user-supplied bounds (overwrites if already exists) if bounds is not None: bounds_.update(bounds) iterations = [] t1 = time.time() param_trajectory: Dict[str, List[Tensor]] = { name: [] for name, param in mll.named_parameters() } loss_trajectory: List[float] = [] i = 0 stop = False stopping_criterion = ExpMAStoppingCriterion( **_filter_kwargs(ExpMAStoppingCriterion, **optim_options) ) train_inputs, train_targets = mll.model.train_inputs, mll.model.train_targets while not stop: optimizer.zero_grad() with gpt_settings.fast_computations(log_prob=approx_mll): output = mll.model(*train_inputs) # we sum here to support batch mode args = [output, train_targets] + _get_extra_mll_args(mll) loss = -mll(*args).sum() loss.backward() loss_trajectory.append(loss.item()) for name, param in mll.named_parameters(): param_trajectory[name].append(param.detach().clone()) if optim_options["disp"] and ( (i + 1) % 10 == 0 or i == (optim_options["maxiter"] - 1) ): print(f"Iter {i + 1}/{optim_options['maxiter']}: {loss.item()}") if track_iterations: iterations.append(OptimizationIteration(i, loss.item(), time.time() - t1)) optimizer.step() # project onto bounds: if bounds_: for pname, param in mll.named_parameters(): if pname in bounds_: param.data = param.data.clamp(*bounds_[pname]) i += 1 stop = stopping_criterion.evaluate(fvals=loss.detach()) info_dict = { "fopt": loss_trajectory[-1], "wall_time": time.time() - t1, "iterations": iterations, } return mll, info_dict