Example #1
0
 def test_query_oneread(self):
     """ Tests querying oneread.fastq file for a single match
     """
     _, matched = bt.count_matches(self.get_r("oneread"), self.get_bf("oneread"),
                                bt.sampling(bt.total_reads(self.get_r("oneread")), 1))
     assert matched[self.get_bf("oneread")] == 1
Example #2
0
 def test_query_nomatch(self):
     checked, matched  = bt.count_matches(self.get_r("nomatch"), self.get_bf("nomatch"),
                                bt.sampling(bt.total_reads(self.get_bf("nomatch")), 1))
     assert checked == 1
     assert isinstance(matched, dict), "Not a dict !: {}".format(type(matched))