#!/usr/bin/env python2 # This script will download pubmed papers for a given start and end index in the current # ftp manifest file # Usage : download_pubmed_muhaha.py start end download_folder import sys import pandas from brainbehavior.pubmed import Pubmed # Get the start and end index of ids from the command line start = int(sys.argv[1]) end = int(sys.argv[2]) download_folder = sys.argv[3] email = sys.argv[4] # First we need to download full article text # Create a pubmed object pm = Pubmed(email) # Get pubmed ids for articles in database pc_ids = pm.get_pubmed_central_ids() # Filter down to indices that we want pc_ids = pc_ids[start:end] # Download the articles! pm.download_pubmed(pc_ids,download_folder)
#!/usr/bin/env python2 # This script will download pubmed papers for a given start and end index in the current # ftp manifest file # Usage : download_pubmed_muhaha.py start end download_folder import sys import pandas from brainbehavior.pubmed import Pubmed # Get the start and end index of ids from the command line pmid = sys.argv[1] download_folder = sys.argv[2] email = sys.argv[3] # First we need to download full article text # Create a pubmed object pm = Pubmed(email) # Download the articles! pm.download_pubmed([pmid],download_folder)
