def loadmask(self):
try:
self.data.mask=calibration.openmask(self.data.cal)
image=nparrayToQPixmap(self.data.mask)
self.data.qtmask=image
maskscene=QGraphicsScene()
maskscene.addPixmap(image)
except IOError as e:
dialog=QErrorMessage(self)
dialog.showMessage(e.message)
return
self.ui.graphicsViewMask.setScene(maskscene)
self.ui.graphicsViewMask.show()
self.resizemask()
def __init__(self, conf, sliceconf, attachments=[]):
x = conf["Geometry"]["Imagesize"][1]
y = conf["Geometry"]["Imagesize"][0]
self.x = x
self.y = y
self.kind = "Slice"
self.conf = conf
self.qname = ""
self.sliceconf = sliceconf
start = sliceconf["CutPosition"] - sliceconf["CutMargin"]
stop = sliceconf["CutPosition"] + sliceconf["CutMargin"]
if len(conf["Masks"]) > 0 and sliceconf['MaskRef'] >= 0:
if len(attachments) > sliceconf['MaskRef']:
attachment = attachments[sliceconf['MaskRef']]
else:
atachment = None
self.mask = openmask(
conf["Masks"][sliceconf['MaskRef']]["MaskFile"],
attachment=attachment)
else:
self.mask = np.zeros((x, y))
if len(conf["Geometry"]['PixelSizeMicroM']) == 1:
conf["Geometry"]['PixelSizeMicroM'].append(
conf["Geometry"]['PixelSizeMicroM'][0])
if sliceconf["Direction"] == "x":
self.Projector = xDirSliceProjector(x, y, start, stop,
self.mask).transpose()
elif sliceconf["Direction"] == "y":
self.Projector = yDirSliceProjector(x, y, start, stop,
self.mask).transpose()
else:
raise Exception("Invalid Direction: " + sliceconf["Direction"])
self.makegrid()
self.areas = self.Projector.dot(np.ones((x, y)).flatten())
#areaswithoutzero=np.where(self.areas>0.0 ,self.areas,-1.0)
self.oneoverA = np.where(self.areas > 0.0, 1.0 / self.areas, np.NAN)
def __init__(self,conf,sliceconf,attachments=[]):
x=conf["Geometry"]["Imagesize"][1]
y=conf["Geometry"]["Imagesize"][0]
self.x=x
self.y=y
self.kind="Slice"
self.conf=conf
self.qname=""
self.sliceconf=sliceconf
start=sliceconf["CutPosition"]-sliceconf["CutMargin"]
stop=sliceconf["CutPosition"]+sliceconf["CutMargin"]
if len (conf["Masks"])>0 and sliceconf['MaskRef']>=0:
if len ( attachments)>sliceconf['MaskRef']:
attachment=attachments[sliceconf['MaskRef']]
else:
atachment=None
self.mask=openmask(conf["Masks"][sliceconf['MaskRef']]["MaskFile"], attachment=attachment )
else:
self.mask=np.zeros((x,y))
if len(conf["Geometry"]['PixelSizeMicroM'])==1:
conf["Geometry"]['PixelSizeMicroM'].append(conf["Geometry"]['PixelSizeMicroM'][0])
if sliceconf["Direction"]=="x":
self.Projector=xDirSliceProjector(x,y,start,stop,self.mask).transpose()
elif sliceconf["Direction"]=="y":
self.Projector=yDirSliceProjector(x,y,start,stop,self.mask).transpose()
else :
raise Exception("Invalid Direction: "+ sliceconf["Direction"])
self.makegrid()
self.areas=self.Projector.dot(np.ones((x,y)).flatten())
#areaswithoutzero=np.where(self.areas>0.0 ,self.areas,-1.0)
self.oneoverA=np.where(self.areas>0.0,1.0/self.areas ,np.NAN)
def getMaskPixMapFromFile(file):
array=calibration.openmask(file)
return nparrayToQPixmap(array)
