def setUp(self):
study_config = StudyConfig() #modules=StudyConfig.default_modules \
#+ ['FomConfig'])
self.pipeline = DummyPipeline()
self.pipeline.set_study_config(study_config)
self.tmpdir = tempfile.mkdtemp()
self.pipeline.input = osp.join(self.tmpdir, 'file_in.nii')
self.pipeline.output1 = osp.join(self.tmpdir, '/tmp/file_out1.nii')
self.pipeline.output2 = osp.join(self.tmpdir, '/tmp/file_out2.nii')
self.pipeline.output3 = osp.join(self.tmpdir, '/tmp/file_out3.nii')
study_config.input_directory = self.tmpdir
study_config.somaworkflow_computing_resource = 'localhost'
study_config.somaworkflow_computing_resources_config.localhost = {
'transfer_paths': [study_config.input_directory],
}
self.study_config = study_config
engine = self.study_config.engine
engine.load_module('spm')
#with engine.settings as session:
#ids = [c.config_id for c in session.configs('spm', 'global')]
#for id in ids:
#session.remove_config('spm', 'global', {'config_id': id})
#session.new_config('spm', 'global',
#{'version': '12', 'standalone': True})
study_config.spm_standalone = True
study_config.spm_version = '12'
study_config.somaworkflow_keep_succeeded_workflows = False
self.exec_ids = []
