def test_log_level():
a = LogLevel()
assert a._flag == '--log-level'
assert a._parser_kwargs['type'] == str
assert not a._parser_kwargs['required']
from cascade_at.dismod.api.dismod_io import DismodIO
LOG = get_loggers(__name__)
ARG_LIST = ArgumentList([
ModelVersionID(),
ListArg('--locations', help='The locations to pull mulcov statistics from', type=int, required=True),
ListArg('--sexes', help='The sexes to pull mulcov statistics from', type=int, required=True),
StrArg('--outfile-name', help='Filepath where mulcov statistics will be saved', required=False, default='mulcov_stats'),
BoolArg('--sample', help='If true, the results will be pulled from the sample table rather'
'than the fit_var table'),
BoolArg('--mean', help='Whether or not to compute the mean'),
BoolArg('--std', help='Whether or not to compute the standard deviation'),
ListArg('--quantile', help='Quantiles to compute', type=float),
LogLevel()
])
def common_covariate_names(dbs):
return set.intersection(
*map(set, [d.covariate.c_covariate_name.tolist() for d in dbs])
)
def get_mulcovs(dbs, covs, table='fit_var'):
"""
Get mulcov values from all of the dbs, with all of the common covariates.
Args:
dbs: list of cascade_at.dismod.api.dismod_io.DismodIO
covs: set of covariate names
import logging
import os
import sys
from cascade_at.executor.args.arg_utils import ArgumentList
from cascade_at.executor.args.args import ModelVersionID, LogLevel
from cascade_at.context.model_context import Context
from cascade_at.core.log import get_loggers, LEVELS
LOG = get_loggers(__name__)
ARG_LIST = ArgumentList([ModelVersionID(), LogLevel()])
def cleanup(model_version_id: int) -> None:
"""
Delete all databases (.db) files attached to a model version.
Parameters
----------
model_version_id
The model version ID to delete databases for
"""
context = Context(model_version_id=model_version_id)
for root, dirs, files in os.walk(context.database_dir):
for f in files:
if f.endswith(".db"):
file = context.database_dir / root / f
LOG.info(f"Deleting {file}.")
os.remove(file)