def create_output_dir(self):
"""
:return:
"""
mkdir_p(self.output_directory)
def output_screenshots(self, mcs: int) -> None:
"""
outputs screenshots. Called from SimpleTabView:handleCompletedStep{Regular,CML*}
:param mcs:
:return:
"""
bsd = self.get_basic_simulation_data()
screenshot_directory_name = self.get_screenshot_dir_name()
mcs_formatted_number = str(mcs).zfill(self.screenshot_number_of_digits)
for i, screenshot_name in enumerate(self.screenshotDataDict.keys()):
screenshot_data = self.screenshotDataDict[screenshot_name]
if not screenshot_name:
screenshot_name = 'screenshot_' + str(i)
screenshot_dir = os.path.join(screenshot_directory_name, screenshot_name)
# will create screenshot directory if directory does not exist
if not os.path.isdir(screenshot_dir):
mkdir_p(screenshot_dir)
screenshot_fname = os.path.join(screenshot_dir, screenshot_name + "_" + mcs_formatted_number + ".png")
self.gd.clear_display()
self.gd.draw(screenshot_data=screenshot_data, bsd=bsd, screenshot_name=screenshot_name)
self.gd.output_screenshot(screenshot_fname=screenshot_fname, file_format="png", screenshot_data=screenshot_data)
def safe_write_screenshot_description_file(self, out_fname):
"""
writes screenshot descr file in a safe mode. any problems are reported via warning
:param out_fname: {str}
:return: None
"""
mkdir_p(dirname(out_fname))
self.write_screenshot_description_file(out_fname)
def create_storage_dir(self) -> None:
"""
Creates storage dir for fields. Initializes self.output_dir_name
:return:
"""
screenshot_directory = cc3d.CompuCellSetup.persistent_globals.output_directory
self.output_dir_name = join(screenshot_directory, 'LatticeData')
mkdir_p(self.output_dir_name)
def output_screenshots_impl(self, mcs: int, screenshot_label_list: list):
"""
implementation function ofr taking screenshots
:param mcs:
:param screenshot_label_list:
:return
"""
if self.output_error_flag:
return
bsd = self.get_basic_simulation_data()
screenshot_directory_name = self.get_screenshot_dir_name()
mcs_formatted_number = str(mcs).zfill(self.screenshot_number_of_digits)
for i, screenshot_name in enumerate(screenshot_label_list):
screenshot_data = self.screenshotDataDict[screenshot_name]
# we are inserting a flag into scene metadata that informs the rest
# of the visualization pipeline that we are dealing with actual screenshop
# and if so we will use e.g. colors from screenshot description file, and not from settings
screenshot_data.metadata['actual_screenshot'] = True
if not screenshot_name:
screenshot_name = 'screenshot_' + str(i)
screenshot_dir = os.path.join(screenshot_directory_name,
screenshot_name)
# will create screenshot directory if directory does not exist
if not os.path.isdir(screenshot_dir):
mkdir_p(screenshot_dir)
screenshot_fname = os.path.join(
screenshot_dir,
screenshot_name + "_" + mcs_formatted_number + ".png")
self.gd.clear_display()
self.gd.draw(screenshot_data=screenshot_data,
bsd=bsd,
screenshot_name=screenshot_name)
self.gd.output_screenshot(screenshot_fname=screenshot_fname,
file_format="png",
screenshot_data=screenshot_data)
def output_screenshots_impl(self, mcs: int, screenshot_label_list: list):
"""
implementation function ofr taking screenshots
:param mcs:
:param screenshot_label_list:
:return
"""
if self.output_error_flag:
return
bsd = self.get_basic_simulation_data()
screenshot_directory_name = self.get_screenshot_dir_name()
mcs_formatted_number = str(mcs).zfill(self.screenshot_number_of_digits)
for i, screenshot_name in enumerate(screenshot_label_list):
screenshot_data = self.screenshotDataDict[screenshot_name]
if not screenshot_name:
screenshot_name = 'screenshot_' + str(i)
screenshot_dir = os.path.join(screenshot_directory_name,
screenshot_name)
# will create screenshot directory if directory does not exist
if not os.path.isdir(screenshot_dir):
mkdir_p(screenshot_dir)
screenshot_fname = os.path.join(
screenshot_dir,
screenshot_name + "_" + mcs_formatted_number + ".png")
self.gd.clear_display()
self.gd.draw(screenshot_data=screenshot_data,
bsd=bsd,
screenshot_name=screenshot_name)
self.gd.output_screenshot(screenshot_fname=screenshot_fname,
file_format="png",
screenshot_data=screenshot_data)