Python is_xray_amplitude_array Examples

Example #1

File: refine_sharpening.py Project: ll-kbh/cctbx_project

def get_array(file_name=None,labels=None):

  print("Reading from %s" %(file_name))
  from iotbx import reflection_file_reader
  reflection_file = reflection_file_reader.any_reflection_file(
       file_name=file_name)
  array_to_use=None
  if labels:
    for array in reflection_file.as_miller_arrays():
      if ",".join(array.info().labels)==labels:
        array_to_use=array
        break
  else:
    for array in reflection_file.as_miller_arrays():
      if array.is_complex_array() or array.is_xray_amplitude_array() or\
          array.is_xray_intensity_array():
        array_to_use=array
        break
  if not array_to_use:
    text=""
    for array in reflection_file.as_miller_arrays():
      text+=" %s " %(",".join(array.info().labels))

    raise Sorry("Cannot identify array to use...possibilities: %s" %(text))

  print("Using the array %s" %(",".join(array_to_use.info().labels)))
  return array_to_use

Example #2

File: refine_sharpening.py Project: cctbx/cctbx-playground

def get_array(file_name=None,labels=None):

  print "Reading from %s" %(file_name)
  from iotbx import reflection_file_reader
  reflection_file = reflection_file_reader.any_reflection_file(
       file_name=file_name)
  array_to_use=None
  if labels:
    for array in reflection_file.as_miller_arrays():
      if ",".join(array.info().labels)==labels:
        array_to_use=array
        break
  else:
    for array in reflection_file.as_miller_arrays():
      if array.is_complex_array() or array.is_xray_amplitude_array() or\
          array.is_xray_intensity_array():
        array_to_use=array
        break
  if not array_to_use:
    text=""
    for array in reflection_file.as_miller_arrays():
      text+=" %s " %(",".join(array.info().labels))

    raise Sorry("Cannot identify array to use...possibilities: %s" %(text))

  print "Using the array %s" %(",".join(array_to_use.info().labels))
  return array_to_use