Python inp_from_form Examples

Example #1

File: frac_cart.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams", "1 1 1 90 90 90"),
     ("coor_type", None),
     ("skip_columns", "0")))
  inp.coordinates = cgi_utils.coordinates_from_form(form)
  return inp

Example #2

def interpret_form_data(form):
    from cctbx.web import cgi_utils
    inp = cgi_utils.inp_from_form(form,
                                  (("p_or_q", "P"), ("p_transpose", "off"),
                                   ("cb_expr", ""), ("obj_type", "xyz"),
                                   ("obj_expr", "")))
    return inp

Example #3

File: structure_factors_pdb.py Project: hainm/cctbx_project

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("algorithm", ""),
     ("form_factors", ""),
     ("d_min", "")))
  inp.coordinates = cgi_utils.coordinates_from_form(form)
  return inp

Example #4

File: change_hand.py Project: hainm/cctbx_project

def interpret_form_data(form):
    inp = cgi_utils.inp_from_form(form,
                                  (("ucparams", "1 1 1 90 90 90"),
                                   ("sgsymbol", "P1"), ("convention", ""),
                                   ("coor_type", None), ("skip_columns", "0")))
    inp.coordinates = cgi_utils.coordinates_from_form(form)
    return inp

Example #5

File: lattice_symmetry.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams", "1 1 1 90 90 90"),
     ("sgsymbol", "P1"),
     ("convention", ""),
     ("max_delta", "5")))
  return inp

Example #6

File: lattice_symmetry.py Project: yayahjb/cctbx_project

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams", "1 1 1 90 90 90"),
     ("sgsymbol", "P1"),
     ("convention", ""),
     ("max_delta", "5")))
  return inp

Example #7

File: structure_factors.py Project: zhuligs/cctbx_project

def interpret_form_data(form):
    inp = cgi_utils.inp_from_form(
        form,
        (("ucparams", "1 1 1 90 90 90"), ("sgsymbol", "P1"),
         ("convention", ""), ("d_min", "1"), ("min_distance_sym_equiv", "0.5"),
         ("algorithm", "automatic"), ("coor_type", None)))
    inp.coordinates = cgi_utils.coordinates_from_form(form)
    return inp

Example #8

File: change_basis.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  from cctbx.web import cgi_utils
  inp = cgi_utils.inp_from_form(form,
    (("p_or_q", "P"),
     ("p_transpose", "off"),
     ("cb_expr", ""),
     ("obj_type", "xyz"),
     ("obj_expr", "")))
  return inp

Example #9

def interpret_form_data(form):
    inp = cgi_utils.inp_from_form(
        form, (("ucparams", None), ("sgsymbol", None), ("convention", ""),
               ("format", None), ("coor_type", None), ("coor_file", None),
               ("coordinates", None), ("min_distance_sym_equiv", "0.5"),
               ("d_min", "3"), ("min_peak_distance", "4.0"),
               ("max_reduced_peaks", "60")))
    inp.coordinates = cgi_utils.coordinates_from_form(form)
    return inp

Example #10

File: wyckoff.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams", "1 1 1 90 90 90"),
     ("sgsymbol", "P1"),
     ("convention", ""),
     ("min_distance_sym_equiv", "0.5"),
     ("coor_type", None),
     ("skip_columns", "0")))
  inp.coordinates = cgi_utils.coordinates_from_form(form)
  return inp

Example #11

File: structure_factors.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams", "1 1 1 90 90 90"),
     ("sgsymbol", "P1"),
     ("convention", ""),
     ("d_min", "1"),
     ("min_distance_sym_equiv", "0.5"),
     ("algorithm", "automatic"),
     ("coor_type", None)))
  inp.coordinates = cgi_utils.coordinates_from_form(form)
  return inp

Example #12

File: change_setting.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams_old", "1 1 1 90 90 90"),
     ("sgsymbol_old", "P1"),
     ("convention_old", ""),
     ("sgsymbol_new", ""),
     ("convention_new", ""),
     ("coor_type", None),
     ("skip_columns", "0")))
  inp.coordinates = cgi_utils.coordinates_from_form(form)
  return inp

Example #13

File: emma.py Project: zhuligs/cctbx_project

def interpret_form_data(form):
    inp = cgi_utils.inp_from_form(
        form,
        (("ucparams_1", ""), ("sgsymbol_1", ""), ("convention_1", ""),
         ("format_1", None), ("coor_type_1", None), ("skip_columns_1", 0),
         ("ucparams_2", ""), ("sgsymbol_2", ""), ("convention_2", ""),
         ("format_2", None), ("coor_type_2", None), ("skip_columns_2", 0),
         ("tolerance", "3.0"), ("diffraction_index_equivalent", None)))
    inp.coordinates = []
    for suffix in ("1", "2"):
        inp.coordinates.append(cgi_utils.coordinates_from_form(form, suffix))
    return inp

Example #14

File: iotbx_cif_validate.py Project: zhuligs/cctbx_project

def interpret_form_data(form):
    inp = cgi_utils.inp_from_form(form,
                                  (("cif_file", None), ("cif_text", None),
                                   ("cif_dic", None),
                                   ("extract_miller_arrays", False),
                                   ("extract_crystal_structures", False),
                                   ("extract_pdb_hierarchy", False),
                                   ("diffraction_index_equivalent", None)))

    inp.extract_miller_arrays = inp.extract_miller_arrays == "True"
    inp.extract_crystal_structures = inp.extract_crystal_structures == "True"
    inp.extract_pdb_hierarchy = inp.extract_pdb_hierarchy == "True"
    return inp

Example #15

File: iotbx_cif_validate.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("cif_file", None),
     ("cif_text", None),
     ("cif_dic", None),
     ("extract_miller_arrays", False),
     ("extract_crystal_structures", False),
     ("extract_pdb_hierarchy", False),
     ("diffraction_index_equivalent", None)))

  inp.extract_miller_arrays = inp.extract_miller_arrays == "True"
  inp.extract_crystal_structures = inp.extract_crystal_structures == "True"
  inp.extract_pdb_hierarchy = inp.extract_pdb_hierarchy == "True"
  return inp

Example #16

File: phase_o_phrenia.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams", None),
     ("sgsymbol", None),
     ("convention", ""),
     ("format", None),
     ("coor_type", None),
     ("coor_file", None),
     ("coordinates", None),
     ("min_distance_sym_equiv", "0.5"),
     ("d_min", "3"),
     ("min_peak_distance", "4.0"),
     ("max_reduced_peaks", "60")))
  inp.coordinates = cgi_utils.coordinates_from_form(form)
  return inp

Example #17

def interpret_form_data(form):
    inp = cgi_utils.inp_from_form(form, (("sgsymbol", ""), ("convention", "")))
    inp.shelx_latt = []
    inp.symxyz = []
    if ("symxyz" in form):
        lines = form["symxyz"].value.split("\015\012")
        for l in lines:
            # Treat SHELX LATT & SYMM cards
            s = l.strip()
            CARD = s[:4].upper()
            if (CARD == "LATT"):
                inp.shelx_latt.append(s[4:])
            elif (CARD == "SYMM"):
                inp.symxyz.append(s[4:].strip())
            else:
                # Plain symmetry operations
                for s in l.split(";"):
                    s = s.strip()
                    if (s != ""): inp.symxyz.append(s)
    return inp

Example #18

File: emma.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("ucparams_1", ""),
     ("sgsymbol_1", ""),
     ("convention_1", ""),
     ("format_1", None),
     ("coor_type_1", None),
     ("skip_columns_1", 0),
     ("ucparams_2", ""),
     ("sgsymbol_2", ""),
     ("convention_2", ""),
     ("format_2", None),
     ("coor_type_2", None),
     ("skip_columns_2", 0),
     ("tolerance", "3.0"),
     ("diffraction_index_equivalent", None)))
  inp.coordinates = []
  for suffix in ("1", "2"):
    inp.coordinates.append(cgi_utils.coordinates_from_form(form, suffix))
  return inp

Example #19

File: explore_symmetry.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("sgsymbol", ""),
     ("convention", "")))
  inp.shelx_latt = []
  inp.symxyz = []
  if (form.has_key("symxyz")):
    lines = form["symxyz"].value.split("\015\012")
    for l in lines:
      # Treat SHELX LATT & SYMM cards
      s = l.strip()
      CARD = s[:4].upper()
      if   (CARD == "LATT"):
        inp.shelx_latt.append(s[4:])
      elif (CARD == "SYMM"):
        inp.symxyz.append(s[4:].strip())
      else:
        # Plain symmetry operations
        for s in l.split(";"):
          s = s.strip()
          if (s != ""): inp.symxyz.append(s)
  return inp

Example #20

File: libtbx_help.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
     (("query", ""),))
  return inp

Example #21

File: all_axes.py Project: cctbx/cctbx-playground

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("sgsymbol", "P1"),
     ("convention", "")))
  return inp

Example #22

File: all_axes.py Project: yayahjb/cctbx_project

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
    (("sgsymbol", "P1"),
     ("convention", "")))
  return inp

Example #23

def interpret_form_data(form):
  inp = cgi_utils.inp_from_form(form,
     (("query", ""),))
  return inp